Evolution och epidemiologi för HIV och enterovirus – Jan Albert grupp

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Article: NATURE COMMUNICATIONS. 2023;14(1):2164
Delayed generation of functional virus-specific circulating T follicular helper cells correlates with severe COVID-19
Yu M; Charles A; Cagigi A; Christ W; osterberg B; Falck-Jones S; Azizmohammadi L; ahlberg E; Falck-Jones R; Svensson J; Nie M; Warnqvist A; Hellgren F; Lenart K; Arcoverde Cerveira R; Ols S; Lindgren G; Lin A; Maecker H; Bell M; Johansson N; Albert J; Sundling C; Czarnewski P; Klingstroem J; Faernert A; Lore K; Smed-Soerensen A
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(12):e2220320120
Functional SARS-CoV-2 cross-reactive CD4⁺ T cells established in early childhood decline with age
Humbert M; Olofsson A; Wullimann D; Niessl J; Hodcroft EB; Cai C; Gao Y; Sohlberg E; Dyrdak R; Mikaeloff F; Neogi U; Albert J; Malmberg K-J; Lund-Johansen F; Aleman S; Bjorkhem-Bergman L; Jenmalm MC; Ljunggren H-G; Buggert M; Karlsson AC
Article: ELIFE. 2023;12:e77345
Human influenza virus infection elicits distinct patterns of monocyte and dendritic cell mobilization in blood and the nasopharynx
Vangeti S; Falck-Jones S; Yu M; Osterberg B; Liu S; Asghar M; Sonden K; Paterson C; Whitley P; Albert J; Johansson N; Farnert A; Smed-Sorensen A
Review: THE LANCET MICROBE. 2023;4(2):e102-e112
Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis
Baxter J; Langhorne S; Shi T; Tully DC; Villabona-Arenas CJ; Hue S; Albert J; Brown AL; Atkins KE
Letter: THE LANCET INFECTIOUS DISEASES. 2022;22(11):1538-1540
Omicron sublineage BA.2.75.2 exhibits extensive escape from neutralising antibodies
Sheward DJ; Kim C; Fischbach J; Sato K; Muschiol S; Ehling RA; Bjorkstrom NK; Hedestam GBK; Reddy ST; Albert J; Peacock TP; Murrell B
Letter: THE LANCET INFECTIOUS DISEASES. 2022;22(10):1421-1422
Evasion of neutralising antibodies by omicron sublineage BA.2.75
Sheward DJ; Kim C; Fischbach J; Muschiol S; Ehling RA; Bjorkstrom NK; Hedestam GBK; Reddy ST; Albert J; Peacock TP; Murrell B
Article: PLOS COMPUTATIONAL BIOLOGY. 2022;18(8):e1009741
Combining biomarker and virus phylogenetic models improves HIV-1 epidemiological source identification
Lundgren E; Romero-Severson E; Albert J; Leitner T
Article: THE LANCET INFECTIOUS DISEASES. 2022;22(6):813-820
Neutralisation sensitivity of the SARS-CoV-2 omicron (B.1.1.529) variant: a cross-sectional study
Sheward DJ; Kim C; Ehling RA; Pankow A; Dopico XC; Dyrdak R; Martin DP; Reddy ST; Dillner J; Hedestam GBK; Albert J; Murrell B
Article: PLOS PATHOGENS. 2022;18(5):e1010515
Evolution, geographic spreading, and demographic distribution of Enterovirus D68
Hodcroft EB; Dyrdak R; Andres C; Egli A; Reist J; de Artola DGM; Alcoba-Florez J; Niesters HGM; Anton A; Poelman R; Reynders M; Wollants E; Neher RA; Albert J
Article: VIRUS EVOLUTION. 2022;8(1):veac022
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load
Zhao L; Wymant C; Blanquart F; Golubchik T; Gall A; Bakker M; Bezemer D; Hall M; Ong SH; Albert J; Bannert N; Fellay J; Grabowski MK; Gunsenheimer-Bartmeyer B; Gunthard HF; Kivela P; Kouyos RD; Laeyendecker O; Meyer L; Porter K; van Sighem A; van der Valk M; Berkhout B; Kellam P; Cornelissen M; Reiss P; Fraser C; Ferretti L
Article: SCIENCE. 2022;375(6580):540-545
A highly virulent variant of HIV-1 circulating in the Netherlands
Wymant C; Bezemer D; Blanquart F; Ferretti L; Gall A; Hall M; Golubchik T; Bakker M; Ong SH; Zhao L; Bonsall D; de Cesare M; MacIntyre-Cockett G; Abeler-Doerner L; Albert J; Bannert N; Fellay J; Grabowski MK; Gunsenheimer-Bartmeyer B; Gunthard HF; Kivela P; Kouyos RD; Laeyendecker O; Meyer L; Porter K; Ristola M; van Sighem A; Ben B; Kellam P; Cornelissen M; Reiss P; Fraser C
Article: CLINICAL & TRANSLATIONAL IMMUNOLOGY. 2022;11(3):e1379
Probabilistic classification of anti-SARS-CoV-2 antibody responses improves seroprevalence estimates
Dopico XC; Muschiol S; Grinberg NF; Aleman S; Sheward DJ; Hanke L; Ahl M; Vikstrom L; Forsell M; Coquet JM; McInerney G; Dillner J; Bogdanovic G; Murrell B; Albert J; Wallace C; Hedestam GBK
Article: JOURNAL OF INTERNAL MEDICINE. 2021;290(3):666-676
Seropositivity in blood donors and pregnant women during the first year of SARS-CoV-2 transmission in Stockholm, Sweden
Castro Dopico X; Muschiol S; Christian M; Hanke L; Sheward DJ; Grinberg NF; Rorbach J; Bogdanovic G; Mcinerney GM; Allander T; Wallace C; Murrell B; Albert J; Karlsson Hedestam GB
Article: JOURNAL OF CLINICAL VIROLOGY. 2021;136:104754
Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020
Dyrdak R; Hodcroft EB; Wahlund M; Neher RA; Albert J
Article: PLOS COMPUTATIONAL BIOLOGY. 2020;16(9):e1008122
Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention
Zhang Y; Leitner T; Albert J; Britton T
Article: SWISS MEDICAL WEEKLY. 2020;150:w20224
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
Richard NA; Robert D; Valentin D; Emma HB; Jan A
Article: INTERNATIONAL JOURNAL OF EPIDEMIOLOGY. 2019;48(6):1795-1803
Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers
Giardina F; Romero-Severson EO; Axelsson M; Svedhem V; Leitner T; Britton T; Albert J
Article: EUROSURVEILLANCE. 2019;24(14):30-37
Challenges in modelling the proportion of undiagnosed HIV infections in Sweden
Andersson E; Nakagawa F; van Sighem A; Axelsson M; Phillips AN; Sonnerborg A; Alber J
Preprint: BIORXIV. 2018
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing
Dyrdak R; Mastafa M; Hodcroft E; Neher R; Albert J
Article: AIDS. 2018;32(7):877-884
Increase in transmitted drug resistance in migrants from sub-Saharan Africa diagnosed with HIV-1 in Sweden
Andersson E; Nordquist A; Esbjornsson J; Flamholc L; Gisslen M; Hejdeman B; Marrone G; Norrgren H; Svedhem V; Wendahl S; Albert J; Sonnerborg A
Article: PLOS COMPUTATIONAL BIOLOGY. 2017;13(10):e1005775
Estimating time of HIV-1 infection from next-generation sequence diversity
Puller V; Neher R; Albert J
Journal article: VIRUS EVOLUTION. 2017;3(1):vex003
In vivo mutation rates and the landscape of fitness costs of HIV-1
Zanini F; Puller V; Brodin J; Albert J; Neher RA
Article: EUROSURVEILLANCE. 2016;21(46):5-10
Outbreak of enterovirus D68 of the new B3 lineage in Stockholm, Sweden, August to September 2016
Dyrdak R; Grabbe M; Hammas B; Ekwall J; Hansson KE; Luthander J; Naucler P; Reinius H; Rotzen-Ostlund M; Albert J
Article: ELIFE. 2016;5:e18889
Establishment and stability of the latent HIV-1 DNA reservoir
Brodin J; Zanini F; Thebo L; Lanz C; Bratt G; Neher RA; Albert J
Article: VIRUS EVOLUTION. 2016;2(1):vew010
HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries
Esbjornsson J; Mild M; Audelin A; Fonager J; Skar H; Jorgensen LB; Liitsola K; Bjorkman P; Bratt G; Gisslen M; Sonnerborg A; Nielsen C; Medstrand P; Albert J
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Evolution och epidemiologi för HIV och enterovirus – Jan Albert grupp

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