Evolution och epidemiologi för HIV och enterovirus – Jan Albert grupp

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Utvalda publikationer

Letter: LANCET MICROBE. 2024;5(12):100998
A novel SARS-CoV-2 recombinant transmitted from a patient with an acute co-infection
Dyrdak R; Stamouli S; Aralaguppe SG; Ekman M; Safari H; Berg C; Movert E; Latorre-Margalef N; Andersson E; Gisslen M; Nederby-Ohd J; Leufven AS; Schoenmakers J; Broddesson S; Murrell B; Albert J
Article: EUROSURVEILLANCE. 2024;29(42):2400058
Sweden surpasses the UNAIDS 95-95-95 target: estimating HIV-1 incidence, 2003 to 2022
Lundgren E; Locke M; Romero-Severson E; Dimitrijevic M; Axelsson M; Andersson E; Carlander C; Brannstroem J; Norrgren H; Mansson F; Elvstam O; Gisslen M; Fohlin L; Sonnerborg A; Albert J; Leitner T
Article: JOURNAL OF INFECTIOUS DISEASES. 2024;230(4):e917-e928
Epidemiological and Clinical Insights into the Enterovirus D68 Upsurge in Europe 2021-2022 and Emergence of Novel B3-Derived Lineages, ENPEN Multicentre Study
Simoes MP; Hodcroft EB; Simmonds P; Albert J; Alidjinou EK; Ambert-Balay K; Andres C; Anton A; Auvray C; Bailly J-L; Baldanti F; Bastings C; Beard S; Berengua C; Berginc N; Bloemen M; Blomqvist S; Bosma F; Boettcher S; Bubba L; Buderus S; Cabrerizo M; Calvo C; Celma C; Ceriotti F; Clark G; Costa I; Coste-Burel M; Coudere K; Cremer J; Casas MDC; Daehne T; de Beer J; de Ceano-Vivas M; De Gascun C; de Rougemont A; Dean J; Dembinski JL; Diedrich S; Diez-Domingo J; Dillner L; Dorenberg DH; Ducancelle A; Dudman S; Dyrdak R; Eis-Huebinger A-M; Falces-Romero I; Farkas A; Feeney S; Fernandez-Garcia MD; Flipse J; Franck KT; Galli C; Garrigue I; Geeraedts F; Georgieva I; Giardina F; Guiomar R; Hauzenberger E; Heikens E; Henquell C; Hober D; Hoenemann M; Howson-Wells H; Hruskar Z; Ikonen N; Imbert B; Jansz AR; Jeannoel M; Jirincova H; Josset L; Keeren K; Kramer-Lindhout N; Krokstad S; Lazrek M; Le Guillou-Guillemette H; Lefeuvre C; Lind A; Lunar MM; Maier M; Marque-Juillet S; McClure CP; McKenna J; Meijer A; Menasalvas Ruiz A; Mengual-Chulia B; Midgley S; Mirand A; Molenkamp R; Montes M; Moreno-Docon A; Morley U; Murk J-L; Navascues-Ortega A; Nijhuis R; Nikolaeva-Glomb L; Nordbo SA; Numanovic S; Oggioni M; Onate Vergara E; Pacaud J; Pacreau ML; Panning M; Pariani E; Pekova L; Pellegrinelli L; Petrovec M; Pietsch C; Pilorge L; Pineiro L; Piralla A; Poljak M; Prochazka B; Rabella N; Rahamat-Langendoen JC; Rainetova P; Reynders M; Riezebos-Brilman A; Roorda L; Savolainen-Kopra C; Schuffenecker I; Smeets LC; Stoyanova A; Stefic K; Swanink C; Tabain I; Tjhie J; Thouault L; Tumiotto C; Renteria SU; Ursic T; Vallet S; Van Ranst M; Van Wunnik P; Verweij JJ; Vila J; Wintermans B; Wollants E; Wolthers KC; Xavier Lopez-Labrador F; Fischer TK; Harvala H; Benschop KSM
Article: EUROSURVEILLANCE. 2024;29(41):2400021
Early unrecognised SARS-CoV-2 introductions shaped the first pandemic wave, Sweden, 2020
Dyrdak R; Hodcroft EB; Broddesson S; Grabbe M; Franklin H; Gisslen M; Holm ME; Lindh M; Nederby-Ohd J; Ringlander J; Sundqvist M; Neher RA; Albert J
Article: JOURNAL OF THE ROYAL SOCIETY INTERFACE. 2024;21(219):20240255
Reconciling founder variant multiplicity of HIV-1 infection with the rate of CD4⁺ decline
Baxter J; Villabona-Arenas CJ; Thompson RN; Hue S; Regoes RR; Kouyos RD; Gunthard HF; Albert J; Leigh Brown A; Atkins KE
Article: INFECTIOUS DISEASES. 2024;56(8):657-668
Prophylaxis and treatment of HIV infection in pregnancy, Swedish guidelines 2024
Naver L; Albert J; Carlander C; Gisslen M; Pettersson K; Soeria-Atmadja S; Sonnerborg A; Westling K; Yilmaz A; Pettersson K
Article: CELL REPORTS MEDICINE. 2024;5(6):101577
Structural basis of broad SARS-CoV-2 cross-neutralization by affinity-matured public antibodies
Sheward DJ; Pushparaj P; Das H; Greaney AJ; Kim C; Kim S; Hanke L; Hyllner E; Dyrdak R; Lee J; Dopico XC; Dosenovic P; Peacock TP; McInerney GM; Albert J; Corcoran M; Bloom JD; Murrell B; Hedestam GBK; Hallberg BM
Letter: LANCET INFECTIOUS DISEASES. 2023;23(11):e462-e463
Sensitivity of the SARS-CoV-2 BA.2.86 variant to prevailing neutralising antibody responses
Sheward DJ; Yang Y; Westerberg M; Oling S; Muschiol S; Sato K; Peacock TP; Hedestam GBK; Albert J; Murrell B
Article: NATURE COMMUNICATIONS. 2023;14(1):2164
Delayed generation of functional virus-specific circulating T follicular helper cells correlates with severe COVID-19
Yu M; Charles A; Cagigi A; Christ W; osterberg B; Falck-Jones S; Azizmohammadi L; ahlberg E; Falck-Jones R; Svensson J; Nie M; Warnqvist A; Hellgren F; Lenart K; Arcoverde Cerveira R; Ols S; Lindgren G; Lin A; Maecker H; Bell M; Johansson N; Albert J; Sundling C; Czarnewski P; Klingstroem J; Faernert A; Lore K; Smed-Soerensen A
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(12):e2220320120
Functional SARS-CoV-2 cross-reactive CD4⁺ T cells established in early childhood decline with age
Humbert M; Olofsson A; Wullimann D; Niessl J; Hodcroft EB; Cai C; Gao Y; Sohlberg E; Dyrdak R; Mikaeloff F; Neogi U; Albert J; Malmberg K-J; Lund-Johansen F; Aleman S; Bjorkhem-Bergman L; Jenmalm MC; Ljunggren H-G; Buggert M; Karlsson AC
Article: ELIFE. 2023;12:e77345
Human influenza virus infection elicits distinct patterns of monocyte and dendritic cell mobilization in blood and the nasopharynx
Vangeti S; Falck-Jones S; Yu M; Osterberg B; Liu S; Asghar M; Sonden K; Paterson C; Whitley P; Albert J; Johansson N; Farnert A; Smed-Sorensen A
Review: LANCET MICROBE. 2023;4(2):e102-e112
Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis
Baxter J; Langhorne S; Shi T; Tully DC; Villabona-Arenas CJ; Hue S; Albert J; Brown AL; Atkins KE
Letter: LANCET INFECTIOUS DISEASES. 2022;22(11):1538-1540
Omicron sublineage BA.2.75.2 exhibits extensive escape from neutralising antibodies
Sheward DJ; Kim C; Fischbach J; Sato K; Muschiol S; Ehling RA; Bjorkstrom NK; Hedestam GBK; Reddy ST; Albert J; Peacock TP; Murrell B
Letter: LANCET INFECTIOUS DISEASES. 2022;22(10):1421-1422
Evasion of neutralising antibodies by omicron sublineage BA.2.75
Sheward DJ; Kim C; Fischbach J; Muschiol S; Ehling RA; Bjorkstrom NK; Hedestam GBK; Reddy ST; Albert J; Peacock TP; Murrell B
Article: PLOS COMPUTATIONAL BIOLOGY. 2022;18(8):e1009741
Combining biomarker and virus phylogenetic models improves HIV-1 epidemiological source identification
Lundgren E; Romero-Severson E; Albert J; Leitner T
Article: LANCET INFECTIOUS DISEASES. 2022;22(6):813-820
Neutralisation sensitivity of the SARS-CoV-2 omicron (B.1.1.529) variant: a cross-sectional study
Sheward DJ; Kim C; Ehling RA; Pankow A; Dopico XC; Dyrdak R; Martin DP; Reddy ST; Dillner J; Hedestam GBK; Albert J; Murrell B
Article: PLOS PATHOGENS. 2022;18(5):e1010515
Evolution, geographic spreading, and demographic distribution of Enterovirus D68
Hodcroft EB; Dyrdak R; Andres C; Egli A; Reist J; de Artola DGM; Alcoba-Florez J; Niesters HGM; Anton A; Poelman R; Reynders M; Wollants E; Neher RA; Albert J
Article: VIRUS EVOLUTION. 2022;8(1):veac022
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load
Zhao L; Wymant C; Blanquart F; Golubchik T; Gall A; Bakker M; Bezemer D; Hall M; Ong SH; Albert J; Bannert N; Fellay J; Grabowski MK; Gunsenheimer-Bartmeyer B; Gunthard HF; Kivela P; Kouyos RD; Laeyendecker O; Meyer L; Porter K; van Sighem A; van der Valk M; Berkhout B; Kellam P; Cornelissen M; Reiss P; Fraser C; Ferretti L
Article: SCIENCE. 2022;375(6580):540-545
A highly virulent variant of HIV-1 circulating in the Netherlands
Wymant C; Bezemer D; Blanquart F; Ferretti L; Gall A; Hall M; Golubchik T; Bakker M; Ong SH; Zhao L; Bonsall D; de Cesare M; MacIntyre-Cockett G; Abeler-Doerner L; Albert J; Bannert N; Fellay J; Grabowski MK; Gunsenheimer-Bartmeyer B; Gunthard HF; Kivela P; Kouyos RD; Laeyendecker O; Meyer L; Porter K; Ristola M; van Sighem A; Ben B; Kellam P; Cornelissen M; Reiss P; Fraser C
Article: CLINICAL & TRANSLATIONAL IMMUNOLOGY. 2022;11(3):e1379
Probabilistic classification of anti-SARS-CoV-2 antibody responses improves seroprevalence estimates
Dopico XC; Muschiol S; Grinberg NF; Aleman S; Sheward DJ; Hanke L; Ahl M; Vikstrom L; Forsell M; Coquet JM; McInerney G; Dillner J; Bogdanovic G; Murrell B; Albert J; Wallace C; Hedestam GBK
Article: JOURNAL OF INTERNAL MEDICINE. 2021;290(3):666-676
Seropositivity in blood donors and pregnant women during the first year of SARS-CoV-2 transmission in Stockholm, Sweden
Castro Dopico X; Muschiol S; Christian M; Hanke L; Sheward DJ; Grinberg NF; Rorbach J; Bogdanovic G; Mcinerney GM; Allander T; Wallace C; Murrell B; Albert J; Karlsson Hedestam GB
Article: JOURNAL OF CLINICAL VIROLOGY. 2021;136:104754
Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020
Dyrdak R; Hodcroft EB; Wahlund M; Neher RA; Albert J
Article: PLOS COMPUTATIONAL BIOLOGY. 2020;16(9):e1008122
Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention
Zhang Y; Leitner T; Albert J; Britton T
Article: SWISS MEDICAL WEEKLY. 2020;150:w20224
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
Richard NA; Robert D; Valentin D; Emma HB; Jan A
Article: INTERNATIONAL JOURNAL OF EPIDEMIOLOGY. 2019;48(6):1795-1803
Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers
Giardina F; Romero-Severson EO; Axelsson M; Svedhem V; Leitner T; Britton T; Albert J
Article: EUROSURVEILLANCE. 2019;24(14):30-37
Challenges in modelling the proportion of undiagnosed HIV infections in Sweden
Andersson E; Nakagawa F; van Sighem A; Axelsson M; Phillips AN; Sonnerborg A; Alber J
Preprint: BIORXIV. 2018
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing
Dyrdak R; Mastafa M; Hodcroft E; Neher R; Albert J
Article: AIDS. 2018;32(7):877-884
Increase in transmitted drug resistance in migrants from sub-Saharan Africa diagnosed with HIV-1 in Sweden
Andersson E; Nordquist A; Esbjornsson J; Flamholc L; Gisslen M; Hejdeman B; Marrone G; Norrgren H; Svedhem V; Wendahl S; Albert J; Sonnerborg A
Article: PLOS COMPUTATIONAL BIOLOGY. 2017;13(10):e1005775
Estimating time of HIV-1 infection from next-generation sequence diversity
Puller V; Neher R; Albert J
Journal article: VIRUS EVOLUTION. 2017;3(1):vex003
In vivo mutation rates and the landscape of fitness costs of HIV-1
Zanini F; Puller V; Brodin J; Albert J; Neher RA
Article: EUROSURVEILLANCE. 2016;21(46):5-10
Outbreak of enterovirus D68 of the new B3 lineage in Stockholm, Sweden, August to September 2016
Dyrdak R; Grabbe M; Hammas B; Ekwall J; Hansson KE; Luthander J; Naucler P; Reinius H; Rotzen-Ostlund M; Albert J
Article: ELIFE. 2016;5:e18889
Establishment and stability of the latent HIV-1 DNA reservoir
Brodin J; Zanini F; Thebo L; Lanz C; Bratt G; Neher RA; Albert J
Article: VIRUS EVOLUTION. 2016;2(1):vew010
HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries
Esbjornsson J; Mild M; Audelin A; Fonager J; Skar H; Jorgensen LB; Liitsola K; Bjorkman P; Bratt G; Gisslen M; Sonnerborg A; Nielsen C; Medstrand P; Albert J
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Evolution och epidemiologi för HIV och enterovirus – Jan Albert grupp

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