Magda Bienkos grupp

Article: NATURE COMMUNICATIONS. 2024;15(1):3475

High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue.

Zhang N; Harbers L; Simonetti M; Diekmann C; Verron Q; Berrino E; Bellomo SE; Longo GMC; Ratz M; Schultz N; Tarish F; Su P; Han B; Wang W; Onorato S; Grassini D; Ballarino R; Giordano S; Yang Q; Sapino A; Frisén J; Alkass K; Druid H; Roukos V; Helleday T; Marchiò C; Bienko M; Crosetto N

Article: NATURE COMMUNICATIONS. 2024;15(1):1768

scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.

Chen JP; Diekmann C; Wu H; Chen C; Della Chiara G; Berrino E; Georgiadis KL; Bouwman BAM; Virdi M; Harbers L; Bellomo SE; Marchiò C; Bienko M; Crosetto N

Article: NATURE COMMUNICATIONS. 2022;13(1):6680

FRET-FISH probes chromatin compaction at individual genomic loci in single cells.

Mota A; Berezicki S; Wernersson E; Harbers L; Li-Wang X; Gradin K; Peuckert C; Crosetto N; Bienko M

Article: SCIENTIFIC DATA. 2022;9(1):47

Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.

Mota A; Schweitzer M; Wernersson E; Crosetto N; Bienko M

Article: NATURE BIOTECHNOLOGY. 2020;38(10):1184-1193

GPSeq reveals the radial organization of chromatin in the cell nucleus.

Girelli G; Custodio J; Kallas T; Agostini F; Wernersson E; Spanjaard B; Mota A; Kolbeinsdottir S; Gelali E; Crosetto N; Bienko M

Article: CELL. 2019;179(7):1647-1660.e19

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.

Asp M; Giacomello S; Larsson L; Wu C; Fürth D; Qian X; Wärdell E; Custodio J; Reimegård J; Salmén F; Österholm C; Ståhl PL; Sundström E; Åkesson E; Bergmann O; Bienko M; Månsson-Broberg A; Nilsson M; Sylvén C; Lundeberg J

Article: NATURE COMMUNICATIONS. 2019;10(1):4732

CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.

Zhang X; Garnerone S; Simonetti M; Harbers L; Nicoś M; Mirzazadeh R; Venesio T; Sapino A; Hartman J; Marchiò C; Bienko M; Crosetto N

Article: MOLECULAR CELL. 2019;75(2):267-283.e12

Spatial Chromosome Folding and Active Transcription Drive DNA Fragility and Formation of Oncogenic MLL Translocations.

Gothe HJ; Bouwman BAM; Gusmao EG; Piccinno R; Petrosino G; Sayols S; Drechsel O; Minneker V; Josipovic N; Mizi A; Nielsen CF; Wagner E-M; Takeda S; Sasanuma H; Hudson DF; Kindler T; Baranello L; Papantonis A; Crosetto N; Roukos V

Article: NATURE GENETICS. 2019;51(6):1011-1023

Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations.

Dellino GI; Palluzzi F; Chiariello AM; Piccioni R; Bianco S; Furia L; De Conti G; Bouwman BAM; Melloni G; Guido D; Giacò L; Luzi L; Cittaro D; Faretta M; Nicodemi M; Crosetto N; Pelicci PG

Article: NATURE COMMUNICATIONS. 2019;10(1):1636

iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.

Gelali E; Girelli G; Matsumoto M; Wernersson E; Custodio J; Mota A; Schweitzer M; Ferenc K; Li X; Mirzazadeh R; Agostini F; Schell JP; Lanner F; Crosetto N; Bienko M

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