Protein degradation pathways – Helin Norberg's research group

The focus of the lab is to dissect the cells own quality control mechanisms to develop novel therapeutic strategies to selectively target pathogenic proteins in cancer or other human disorders. To this end, the group study the molecular details of various fundamentally different protein degradation mechanisms, involving the autophagy-lysosome pathways. The lab encompasses full spectrum of investigations on both basic research and highly translational efforts using patient and animal experiments.

Researcher in lab with her back against the camera

Research at Helin Norberg lab

The Norberg lab current research focuses on Chaperone-mediated Autophagy (CMA), a unique type of mammalian autophagy that only applies to proteins without affecting cellular organelles.

Illustration of Chaperone-mediated Autophagy (CMA), a unique type of mammalian autophagy that only applies to proteins without affecting cellular organelles
Figure legend: Schematic illustration of used methodologies and approaches in the group in respect to current CMA research projects.

Over the recent years, the Norberg lab has explored new therapeutic approaches by stimulating the cell’s own quality control mechanisms to induce the degradation of pathogenic proteins to prevent their aberrant accumulation. More recently, the lab has been dedicated on developing a new field of `Controlled Autophagic Proteostasis' by studying the autophagy-lysosomal pathway. Therefore, the current research focuses on Chaperone-mediated Autophagy (CMA), a unique type of mammalian autophagy that only applies to proteins without affecting cellular organelles.

The role and impact of CMA in Cancer

Proteins that promote tumor growth and dissemination are often mutated, deregulated and distinctively stabilized in cancer cells. As pathogenic accumulation of these proteins effectively sustains cancer progression, they represent indisputable targets for treatment. Hence, understanding how these proteins can be removed is of great importance for improved cancer therapy. The goal of this project is therefore, to study mechanisms of protein degradation by CMA to understand a) the implication of recruiting the unique type of mammalian autophagy to specifically promote lysosomal degradation of oncoproteins, b) to identify novel CMA targetable oncoproteins, c) the impact of degrading oncoproteins by CMA.

To explore the impact of CMA activation

The role of CMA in cancer cells remain paradoxal and the physiological importance of CMA in cancer is currently not defined. Therefore, this project intends to investigate the CMA pathway in depths both at cellular and organismal level, in order to explore the intriguing possible role of activating CMA in various human malignancies to find selective targeted approaches applicable for pathogenic proteins. Further the project aims to understand the underlying molecular mechanisms of CMA activation and its oncogenic and pathogenic targeting. Ultimately, we aim to explore the impact of CMA activation in vivo.

The role and impact of CMA in human disorders

The findings from the above-mentioned projects will provided with answers to address a long-standing question in cell biology; How is CMA activated and regulated in cells? However, although the answers to these questions will provide us with a detailed molecular understanding of a fundamental biological process, we still need a comprehensive understanding of the role of CMA in various medical conditions as a basis for proposing new treatment strategies. Therefore, this project, is design to understand the role and impact of CMA in proteopathies and multiple other human diseases. This project has a translational focus which enables a tremendous potential to open up new therapeutic avenues and biomarkers.

News from Helin Norberg lab

Publications

Selected publications

  • Article: CELL DEATH DISCOVERY. 2024;10(1):342
    Becirovic T; Zhang B; Lindskog C; Norberg E; Vakifahmetoglu-Norberg H; Kaminskyy VO; Kochetkova E
  • Article: NUTRIENTS. 2024;16(12):1816
    Centeno D; Farsinejad S; Kochetkova E; Volpari T; Gladych-Macioszek A; Klupczynska-Gabryszak A; Polotaye T; Greenberg M; Kung D; Hyde E; Alshehri S; Pavlovic T; Sullivan W; Plewa S; Vakifahmetoglu-Norberg H; Monsma Jr FJ; Muller PAJ; Matysiak J; Zaborowski MP; DiFeo A; Norberg E; Martin LA; Iwanicki M
  • Preprint: BIORXIV. 2024;BIORXIV
    Centeno D; Farsinejad S; Kochetkova E; Volpari T; Gladych-Macioszek A; Klupczynska-Gabryszak A; Polotaye T; Greenberg M; Kung D; Hyde E; Alshehri S; Pavlovic T; Sullivan W; Plewa S; Vakifahmetoglu-Norberg H; Monsma FJ; Muller PAJ; Matysiak J; Zaborowski M; DiFeo A; Norberg E; Martin LA; Iwanicki M
  • Article: AUTOPHAGY. 2023;19(9):2575-2577
    Zhou X; Shirokova V; Kaminskyy VO; Berenger E; Kochetkova E; Norberg E; Genander M; Vakifahmetoglu-Norberg H
  • Journal article: HEPATOMA RESEARCH. 2023;9:19
    Colasanti T; Vakifahmetoglu-Norberg H; Mancone C
  • Article: METHODS IN MOLECULAR BIOLOGY. 2022;2445:39-50
    Yu T-T; Zhou X; Vakifahmetoglu-Norberg H
  • Article: AUTOPHAGY. 2021;17(11):3865-3874
    Kacal M; Zhang B; Hao Y; Norberg E; Vakifahmetoglu-Norberg H
  • Article: CELL DEATH AND DIFFERENTIATION. 2021;28(3):1091-1109
    Krassikova L; Zhang B; Nagarajan D; Queiroz AL; Kacal M; Samakidis E; Vakifahmetoglu-Norberg H; Norberg E
  • Review: AUTOPHAGY. 2021;17(1):1-382
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  • Review: FRONTIERS IN ONCOLOGY. 2020;10:607149
    Shi Y; Norberg E; Vakifahmetoglu-Norberg H
  • Article: AUTOPHAGY. 2019;15(9):1558-1571
    Hao Y; Kacal M; Ouchida AT; Zhang B; Norberg E; Vakifahmetoglu-Norberg H
  • Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2018;502(4):429-434
    Ouchida AT; Kacal M; Zheng A; Ambroise G; Zhang B; Norberg E; Vakifahmetoglu-Norberg H
  • Editorial comment: THERANOSTICS. 2018;8(7):2061-2063
    Queiroz AL; Vakifahmetoglu-Norberg H; Norberg E
  • Article: MOLECULAR AND CELLULAR BIOLOGY. 2017;37(24):e00328-e00317
    Eriksson M; Ambroise G; Ouchida AT; Queiroz AL; Smith D; Gimenez-Cassina A; Iwanicki MP; Muller PA; Norberg E; Vakifahmetoglu-Norberg H
  • Article: CELL REPORTS. 2017;19(11):2289-2303
    Zhang B; Zheng A; Hydbring P; Ambroise G; Ouchida AT; Goiny M; Vakifahmetoglu-Norberg H; Norberg E
  • Article: JOURNAL OF CANCER. 2017;8(11):2088-2096
    Zhang B; Tornmalm J; Widengren J; Vakifahmetoglu-Norberg H; Norberg E

Staff and contact

Group leader

All members of the group

Visiting address

Karolinska Institute, Solnavägen 9, Biomedicum, Solna, 171 65, Sweden

Postal address

Karolinska Institute, Physiology and Pharmacology, Attn: [Name of recipient], Stockholm, 171 77, Sweden

Picture of Helin Norberg lab's group members, standing next to eachother in Biomedicum.
From left to Right: Vitaly Kaminsky (Researcher), Xun Zhou (Postdoc), Yong Shi (Postdoc), Helin Norberg (PI), Aironas Los (Bachelor Student), Merve Kacal (PhD student, Ellen Olerup (Medical Student). Photo: Elena Kochetkova

Co-supervision

Lisa Benrejdal – PhD student (Assoc Prof. Peter Bergman Lab, Dept of Laboratory Medicine. KI) (Co-supervisor).

Alumni

Tingting Yu – Guest researcher, now Assistant Professor (Nanjing Medical University, China).

Amanda Ouchida – Postdoctoral researcher, now at Albert Einstein College of Medicine, NY, USA.

Adi Zheng – Postdoctoral researcher, now at University of Lausanne, Switzerland.

Yuqing Hao –  Postdoctoral researcher, now researcher at BeiGene, China.

Tao Cui – Postdoctoral researcher, now researcher at Novartis, China.

Gorba Ambroise – Postdoctoral researcher.

Mathilda Eriksson – Lab manaher, now Research engineer (KI).

Davide Chiesi – Masters student, now at Novartis, Switzerland.

Kristin Uth – Project student, now PhD student (Bern, Switzerland).

Available positions

  • We are seeking for a highly motivated and innovative postdoctoral scientist.
  • We welcome applications from well-qualified Masters students.

How to find us

Protein degradation pathways

Protein Degradation Pathways

There are two major fundamentally different mechanisms by which cells degrade proteins for turnover and recycling purposes: the lysosome and the proteasome. Our research uses a creative combination of pharmacological, biochemical and genetic approaches to rigorously investigate the biological significance of these degradation mechanisms in normal and cancer cells.

Hence, our aim is to understand the complexity of various degradation systems and its explicit interactions and mechanisms, that might provide a foundation for the development of diagnostic strategies and major conceptual advance to uncover novel therapeutic drug targets in malignancies as well as in other human disorders.

Current research projects

Ubiquitin-Proteasome System (UPS) in Cancer

The Ubiquitin-Proteasome System (UPS) involves the targeting of polyubiquitination proteins for recognition and processing by the 26S proteasome, a multicatalytic enzyme complex that degrades the proteins, and recycles ubiquitin. The ubiquitylation process is carried out by three classes of enzymes; E1 (activating enzyme), E2 (conjugating enzyme) and E3 (ubiquitin ligase), as well as DUB (deubiquitinating enzymes).

Many proteasome target proteins include a broad array of regulatory proteins that play important roles in cell cycle progression, cell development and differentiation, DNA damage responses, and tumorgenesis. In addition, aberrations in the components of the ubiquitin proteasome pathway are commonly observed in many cancers. We are interested in understanding the role of UPS in cancer and to investigate the possibility of targeting different steps the ubiquitin-proteasome system for cancer treatment.

Autophagy Pathways in Cancer

Proteins destined for lysosomal degradation can reach the lysosome by a variety of means and autophagy is one regulated pathway of lysosomal degradation in mammalian cells. There are three main processes of autophagy; of which we are focusing on is macroautophagy and chaperone-mediated autophagy CMA.

Autophagy in Cancer:

Activation of autophagy, as one regulated pathway of lysosomal degradation, confers stress resistance and sustains cancer cell survival under adverse conditions. Moreover, activation of autophagy has been implicated in mediating resistance to existing anticancer therapy. However, the role of autophagy in cancer is complex and our aim is to investigate the impact of manipulating autophagy pathways to understand the contribution of factors and signaling that might regulate tumorigenesis and chemoresistance.

Chaperone-mediated Autophagy (CMA) in Cancer:

In a mammalian cell, chaperone-mediated autophagy (CMA) is one of the types of autophagy that is specific to breakdown of protein. Beyond its selectivity for proteins, another unique feature of this type of autophagy is that proteins are directly transported into the lysosome for degradation during CMA. Depending on which proteins are degraded by this pathway, CMA can perform various physiological and pathological functions. To date the role of CMA in cancer cells has remained obscure and the physiological importance of CMA in cancer is currently not defined. Therefore, our research intends to investigate the CMA pathway in depths both at cellular and organismal level, in order to explore the intriguing possible role of CMA in various human cancers.

Group members

Davide Chiesi – Master student

Merve Kacal – PhD student

Helin Norberg – Research group leader

Tingting Yu – Lecture 

Alumni

Tao Cui

Mathilda Eriksson

Kristin Uth

Adi Zheng

Selected publications

Targetome analysis of chaperone-mediated autophagy in cancer cells.
Hao Y, Kacal M, Ouchida AT, Zhang B, Norberg E, Vakifahmetoglu-Norberg H
Autophagy 2019 Sep;15(9):1558-1571

USP10 regulates the stability of the EMT-transcription factor Slug/SNAI2.
Ouchida AT, Kacal M, Zheng A, Ambroise G, Zhang B, Norberg E, et al
Biochem. Biophys. Res. Commun. 2018 08;502(4):429-434

Resistant to Targeted Therapy - Aim for Metabolic Liabilities.
Queiroz AL, Vakifahmetoglu-Norberg H, Norberg E
Theranostics 2018 ;8(7):2061-2063

Effect of Mutant p53 Proteins on Glycolysis and Mitochondrial Metabolism.
Eriksson M, Ambroise G, Ouchida AT, Lima Queiroz A, Smith D, Gimenez-Cassina A, et al
Mol. Cell. Biol. 2017 Dec;37(24):

Characterization of the Role of the Malate Dehydrogenases to Lung Tumor Cell Survival.
Zhang B, Tornmalm J, Widengren J, Vakifahmetoglu-Norberg H, Norberg E
J Cancer 2017 ;8(11):2088-2096

PHGDH Defines a Metabolic Subtype in Lung Adenocarcinomas with Poor Prognosis.
Zhang B, Zheng A, Hydbring P, Ambroise G, Ouchida AT, Goiny M, et al
Cell Rep 2017 06;19(11):2289-2303

Activation of chaperone-mediated autophagy as a potential anticancer therapy.
Galan-Acosta L, Xia H, Yuan J, Vakifahmetoglu-Norberg H
Autophagy 2015 ;11(12):2370-1

Degradation of HK2 by chaperone-mediated autophagy promotes metabolic catastrophe and cell death.
Xia HG, Najafov A, Geng J, Galan-Acosta L, Han X, Guo Y, et al
J. Cell Biol. 2015 Aug;210(5):705-16

Activation of necroptosis in multiple sclerosis.
Ofengeim D, Ito Y, Najafov A, Zhang Y, Shan B, DeWitt JP, et al
Cell Rep 2015 Mar;10(11):1836-49

Pharmacologic agents targeting autophagy.
Vakifahmetoglu-Norberg H, Xia HG, Yuan J
J. Clin. Invest. 2015 Jan;125(1):5-13

Chaperone-mediated autophagy degrades mutant p53.
Vakifahmetoglu-Norberg H, Kim M, Xia HG, Iwanicki MP, Ofengeim D, Coloff JL, et al
Genes Dev. 2013 Aug;27(15):1718-30

Deubiquitination of NLRP3 by BRCC3 critically regulates inflammasome activity.
Py BF, Kim MS, Vakifahmetoglu-Norberg H, Yuan J
Mol. Cell 2013 Jan;49(2):331-8

Beclin1 controls the levels of p53 by regulating the deubiquitination activity of USP10 and USP13.
Liu J, Xia H, Kim M, Xu L, Li Y, Zhang L, et al
Cell 2011 Sep;147(1):223-34

Contact

Profile image

Helin Norberg

Principal Researcher