Microbiota–gut–brain axis and neurodevelopment – Rochellys Diaz Heijtz group

Our research investigates how the gut microbiota shapes brain development and function. We study microbial metabolites and bacterial components, especially peptidoglycans, and how they interact with genetic and early-life environmental factors to influence neural circuits, behavior, and risk for conditions such as autism spectrum disorder (ASD) and attention-deficit/hyperactivity disorder (ADHD).

Research focus

Autism spectrum disorder (ASD) is an early onset neurodevelopmental condition characterized by challenges in social communication and interaction, together with restricted and repetitive behaviors and atypical sensory processing. Many individuals with ASD also experience gastrointestinal and immune dysfunction, sleep problems, epilepsy and anxiety. ASD is a complex, heterogeneous condition with a strong genetic basis. Environmental exposures during pregnancy and early life, such as maternal stress, infections, diet, antibiotics and immune activation, also influence neurodevelopmental trajectories. Understanding how genetic susceptibility interacts with early environmental factors is essential for clarifying why some children follow typical developmental trajectories while others develop neurodevelopmental profiles characteristic of ASD.

Increasing evidence points to the gut microbiota as one biological pathway through which genetic and environmental influences may converge. Microbial metabolites and structural components, including peptidoglycans, modulate immune signaling, microglial maturation, synaptic development, myelination and other processes central to neurodevelopment. These findings suggest that early microbial life may contribute to the variability observed in ASD and may influence developmental trajectories in genetically susceptible individuals.

Illustration av Biological signaling pathways and molecules involved in the microbiota-gut-brain axis
There are multiple pathways through which the gut microbiota can influence the brain, including neuronal communication via the vagus nerve and the enteric nervous system, microbial metabolites such as short chain fatty acids and tryptophan derivatives, neurotransmitters, immune cell cytokines and gut hormone signaling. These signals shape neurodevelopmental processes including microglial maturation, blood brain barrier integrity, myelination and neurogenesis. For more details, see Gonzalez Santana A, Diaz Heijtz R, Trends in Molecular Medicine 2020;26(8):729–743. Image: Rochellys Diaz Heijtz
Genetic susceptibility, environmental exposures and early life microbiota derived signals work together to influence fetal brain development and contribute to differences in neurodevelopmental outcomes.
Maternal gut microbiota derived metabolites and bacterial components influencing fetal brain development. Image: Rochellys Diaz Heijtz

Our research investigates how the gut microbiota and its bioactive molecules shape brain development, brain function and behavior from the fetal period into adulthood. We focus on gut microbiota derived metabolites and peptidoglycans, and how these signals interact with genetic vulnerability and environmental exposures to influence ASD related neurodevelopmental outcomes. We use an integrative approach that includes animal models, human longitudinal cohorts and human derived tissues. We work closely with national and international collaborators, including clinicians, psychologists, microbiologists and immunologists, which strengthens our translational approach and supports continuous integration of basic, preclinical and clinical research.

Conceptual overview of Diaz Heijtz group research

Genetic susceptibility, environmental exposures and early life microbiota derived signals influence fetal brain development and contribute to variation in neurodevelopmental trajectories.  Image generated with AI tools.

Central Hypothesis

We propose that microbiota derived factors (MDFs) play an essential role in shaping typical brain development. Disruptions in the levels or timing of these signals during sensitive developmental periods can alter key neurodevelopmental processes and increase susceptibility to ASD. These effects are expected to interact with genetic variation in ASD related pathways and in microbial sensing mechanisms, amplifying vulnerability through gene–environment interactions within the microbiota gut brain axis.

Translational research approach

The research program integrates infant cohorts, gut microbiome and metabolome profiling, stem cell models and animal models, to investigate how microbiota derived signals influence typical and atypical brain development.

bild med olika komponenter som beskriver Tarmflorans roll i typisk och atypisk hjärnutveckling
Translational research approach. Image: Rochellys Diaz Heijtz

Recent Scientific Discoveries

Early differences in gut microbiota and metabolities in infants at elevated likelihood of ASD

In a prospective longitudinal study in infants at elevated likelihood of ASD (siblings of autistic children), published in Translational Psychiatry in 2023 (DOI: 10.1038/s41398-023-02556-6), we showed that already at five months these infants display distinct gut microbiota and metabolic profiles compared with infants without a family history of ASD. Elevated likelihood infants had reduced levels of Bifidobacterium species, key early colonizers important for folate synthesis, immune maturation and pathogen resistance, and increased levels of several Clostridium species, pathobionts associated with inflammation and ASD.

Metabolomic profiling revealed lower fecal GABA concentrations in the elevated likelihood group, which aligned with the distinct microbial composition. Importantly, these microbiota and metabolite differences appeared before any detectable behavioral alterations at 36 months of age and prior to differences in diet. Together, these findings highlight close relationships between early gut microbial ecology, metabolite production and developing neurobehavioral trajectories in infants with heightened genetic susceptibility to ASD.

Short term antibiotic exposure promotes peptidoglycan activity in the brain and disrupts social behavior

Beta lactam antibiotics, among the most commonly prescribed medications, are known to disrupt the commensal gut microbiota and reduce microbial diversity. In a recent experimental study in mice, we demonstrated that short term exposure to ampicillin enhances the translocation of peptidoglycan fragments from the gut to the brain, establishing a novel mechanistic link between antibiotic induced microbiota disruption and central nervous system function. This translocation correlated with impaired social behavior, altered expression of synaptic and microglia related genes, reductions in functional brain connectivity, and changes in gut barrier integrity and microbial composition.

Peptidoglycan fragments from Gram negative bacteria replicated several behavioral and molecular effects observed with antibiotic treatment, further implicating peptidoglycan signaling pathways in the central nervous system effects of beta lactam antibiotics. These findings highlight potential risks of repeated antibiotic use for brain health, particularly in individuals genetically predisposed to neurological conditions.

Sammansättning av olika bilder och text
Graphical summary of the impact of antibiotic treatment on peptidoglycan translocation into the brain and subsequent behavioral, functional and physiological outcomes. Image: Inés Martínez Sánchez

Key research areas

  • Role of gut microbiota derived metabolites and peptidoglycans during pregnancy and early postnatal life in shaping brain development and neurodevelopmental trajectories
  • Effects of early life antibiotics and other environmental exposures such as stress on gut microbiota, brain circuits and behavior
  • Gene environment interactions influencing ASD related neurodevelopment
  • Longitudinal human cohorts, including infants at elevated likelihood of ASD and population twins
  • Microbiota based early life interventions aimed at promoting healthy neurodevelopment and resilience

Keywords

Microbiota gut brain axis, Neurodevelopmental disorders, Autism spectrum disorder, Peptidoglycans

Publications

Selected publications

All publications from group members

Fetal, neonatal, and infant microbiome: Perturbations and subsequent effects on brain development and behavior.
Diaz Heijtz R
Semin Fetal Neonatal Med 2016 12;21(6):410-417

Host microbiota modulates development of social preference in mice.
Arentsen T, Raith H, Qian Y, Forssberg H, Diaz Heijtz R
Microb Ecol Health Dis 2015 ;26():29719

Normal gut microbiota modulates brain development and behavior.
Diaz Heijtz R, Wang S, Anuar F, Qian Y, Björkholm B, Samuelsson A, Hibberd ML, Forssberg H, Pettersson S
Proc Natl Acad Sci U S A 2011 Feb;108(7):3047-52

Staff and contact

Group leader

All members of the group

Contact and visit us

Contact information for the Diaz Heijtz laboratory at the Department of Neuroscience, Karolinska Institutet.

Postal address

Karolinska Institutet
Department of Neuroscience
171 77 Stockholm

Visiting address (visitors, couriers, etc.)

Karolinska Institutet
Biomedicum, D8
Solnavägen 9
171 65 Solna

Delivery address (goods, parcels, etc.)

Tomtebodavägen 16
171 65 Solna

Map: Karolinska Institutet, Biomedicum, Solnavägen 9

Scientific activities

Symposia (selected 2023-2025)

2025

  • Invited Speaker, 4th International Symposium “Microbiome: From Benchtop to Bedside”, November 19, Antwerp, Belgium
  • Invited Speaker, EMBO | EMBL Symposium: The Human Microbiome 2025, September 16–19, Heidelberg, Germany
  • Invited Speaker, Congress on Brain Behavior and Emotions 2025, June 18–21, Fortaleza, Brazil
  • Invited Speaker, Microbiome & Probiotic R&D & Business Collaboration Forum (Europe), April 28–29, The Hague, The Netherlands
  • Guest Speaker, Canadian Digestive Diseases Week 2025, Québec City, Canada

2024

  • Keynote Speaker, 2nd Copenhagen Gut Microbiome Symposium, November 25, Copenhagen, Denmark
  • Invited Speaker, 12th International Society of Microbiology (ISM) Meeting on Targeting Microbiota, October 14–15, Malta
  • Invited Speaker, 37th ECNP Congress, Scientific Symposium “Precision medicine and personalized psychopharmacology in neurodevelopmental disorders”, September 21–24, Milan, Italy
  • Invited Speaker, 10th International Human Microbiome Consortium (IHMC) Symposia: Microbiome and Gut Brain Axis and Manipulating the Gut Microbiome to Improve Neurological Diseases, June 22–25, Rome, Italy
  • Invited Speaker, FENS Forum 2024, Scientific Symposium “The microbiota gut brain axis in brain development and adult function”, June 28, Vienna, Austria
  • Invited Speaker, 9th International Congress on Probiotics, Prebiotics and Postbiotics in Pediatrics, April 25–28, Antalya, Turkey
  • Closing Keynote Speaker, 15th SEMiPyP Workshop, February 20–23, Sevilla, Spain

2023

  • Invited Speaker, 10th Beneficial Microbes Conference, November 27–29, Amsterdam, The Netherlands
  • Keynote Speaker, 4th International World of Microbiome Conference, October 26–28, Sofia, Bulgaria
  • Invited Speaker, Microbiome & Probiotic R&D & Business Collaboration Forum (Europe), May 23–24, Rotterdam, The Netherlands

Appointments

  • Guest Professor, Zhengzhou University, China (2024–2026)
  • Honorary Professor, Old Herborn University, Germany on 15 June 2023

Commission of Trust

  • Member, Advisory Board of the UK Gut Immune Brain Axis Network+ (2025– )
  • Member, Advisory Board, Old Herborn University Foundation, Germany (2024– )
  • Expert Reviewer, European Innovation Council (EIC) Pathfinder Program (2024– )
  • Member, Supervisory Board, H2020 MSCA ITN SmartAge (2020–2025)
  • Member, Scientific Advisory Committee, Mind, Mood & Microbes Conference (2016– )

Editorial activities

  • Editor in Chief, Journal of Developmental Neuroscience (2025– )
  • Guest Editor, BMC Medicine, Special Issue on gut microbiota and human disease (2025)
Inés defending her thesis along with opponent and other
Inés Martínez Sánchez' doctoral thesis defence, 13 June 2025. Photo: Rochellys Diaz Heijtz

Recent doctoral thesis

Inés Martínez Sánchez: "Unraveling the Impact of Bacterial Peptidoglycans from Gut Microbiota on Brain Development, Function and Behavior". Karolinska Institutet, 13 June 2025.

Picture gallery

Rochellys Diaz Heijtz to the right, among other Honoray Professors.
Image gallery
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