Liver and monocyte remodelling in non-alcoholic fatty liver disease and cardiovascular disease - Rongrong Fan

Non-alcoholic fatty liver disease (NAFLD) and cardiovascular diseases (CVD) are emerging as major threats to modern societies. Our research aims to understand how metabolic stress signals reprogram hepatocytes and immune cells to promote the progression of these diseases.

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Rongrong Fan

Principal Researcher

Investigating hepatocyte and liver macrophage remodeling in NAFLD

Liver is the major organ of energy metabolism. The metabolic pathways in the liver are tightly controlled to balance its anabolic and catabolic activities. Under conditions of over-nutrition this balance is disrupted, which promotes lipid accumulation in the hepatocytes to form a pathological phenotype of steatosis. Liver steatosis can further proceed to more severe stages of non-alcoholic steatohepatitis (NASH), fibrosis and cirrhosis, which can ultimately develop into liver cancer. So far there is no clinically approved pharmaceutic therapy to reverse the process, largely due to limited understanding of the molecular events underlying the disease development.

illustration of a healthy liver going to Fibrosis/cirrhosis
Monocytes and liver-resident macrophages are activated by stimuli from the microenvironment and communicate with metabolic tissues to affect disease progression. Illustration by: Rongrong Fan

It is generally accepted that dysregulated liver lipid metabolism and inflammation are two crucial mechanisms involved in NAFLD development, although the transcription network and the related epigenome remodeling events remain largely unclarified. Data mining in liver disease patient cohorts allowed us to identify several candidate epigenomic modulators that are correlated with NAFLD phenotypes. Our ongoing efforts attempt to validate these candidates and to explore their mechanism of action through a variety of methodologies, including tissue-specific mouse models and next-generation sequencing approaches.

Unraveling the lipid-regulated monocyte activation mechanisms in atherosclerosis

The high burden of CVD is attributable to the increasing incidence of atherosclerosis. Atherosclerosis is initiated by endothelium dysfunction, followed by immune cell (including monocytes) infiltration into the vascular intima to induce forming of plaques. Activation of monocytes by pathological factors (i.e. obesity, hypercholesterolemia and hyperglycemia) serves as the key mechanism to promote the disease development. Moreover, such immunological activation exhibits ‘memories’ which cause disease relapse and drug resistance.

In collaboration with the clinical researchers at the Karolinska University Hospital, we plan to apply established epigenome analysis techniques in a large and well-characterized Swedish cohort of patients with lipid disorders. The major aim is to understand how an excess of lipids in the circulation alters the monocyte epigenome, particularly at enhancer regions, and modulates their metabolic activation, memory and atherogenic properties.

Looking for a Postdoc, Master or PhD Project?

We always welcome motivated Master students, PhD students and postdocs who have a relevant background and a keen interest in our research. Please contact  for potential projects and vacancies

News from the group

Selected publications

Antagonistic action of GPS2 and KDM1A at enhancers governs alternative macrophage activation by interleukin 4. 
Huang, Z., Efthymiadou, A., Liang, N., Fan RR. (co-corresponding author), Treuter E.
Nucleic Acids Research 2022 (In press)

An optimized 4C-seq protocol based on cistrome and epigenome data in the mouse RAW264.7 macrophage cell line.
Huang Z, Wang C, Treuter E, Fan R
STAR Protoc 2022 Jun;3(2):101338

The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages.
Huang Z, Liang N, Goñi S, Damdimopoulos A, Wang C, Ballaire R, Jager J, Niskanen H, Han H, Jakobsson T, Bracken AP, Aouadi M, Venteclef N, Kaikkonen MU, Fan R, Treuter E
Mol Cell 2021 Mar;81(5):953-968.e9

PPARα and NCOR/SMRT corepressor network in liver metabolic regulation.
Kang Z, Fan R
FASEB J 2020 Jul;34(7):8796-8809

Hepatocyte-specific loss of GPS2 in mice reduces non-alcoholic steatohepatitis via activation of PPARα.
Liang N, Damdimopoulos A, Goñi S, Huang Z, Vedin LL, Jakobsson T, Giudici M, Ahmed O, Pedrelli M, Barilla S, Alzaid F, Mendoza A, Schröder T, Kuiper R, Parini P, Hollenberg A, Lefebvre P, Francque S, Van Gaal L, Staels B, Venteclef N, Treuter E, Fan R
Nat Commun 2019 Apr;10(1):1684


Our research is supported by grants from the Center for Innovative Medicine at Karolinska Institutet South (CIMED, Region Stockholm), the Swedish Research Council, the Novo Nordisk Foundation, the Swedish Diabetes Research & Wellness Foundation, and the European Foundation for the Study of Diabetes (EFSD).

Content reviewer:
Sara Bruce