Image analysis platforms: VDI and Remote Desktop
The LCI analysis software is located on two powerful servers which can be accessed from any computer.
VDI
VDI is shared by several users and less powerful. There is a fee for using the VDI, except for users with an LCI membership.
- Imaris viewer
- NIS Element full licence: AI, visualization, High content data (JOBS), STORM, image analysis
- Zen viewer: Visualization and simple rendering
- ImageJ/Fiji: image processing and visualization freeware
- Cell Profiler: 5D rendering and analysis freeware
- MatLab: custom-made analysis scripting
- Python: custom-made analysis scripting
- QPath: open source software for digital pathology and whole slide image analysis
- CTFire: analysis of polarization microscopy images freeware
- Omero: Data management freeware
- Ilastik: open source analysis software
- Napari: is a Python library for n-dimensional image visualisation, annotation, and analysis.
Remote Desktop
Remote Desktop is for one user at a time and it is much more powerful. There is a fee for using Remote Desktop.
- Imaris full licence, ImarisFileConverter, ImarisViewer
- M2 Deconvolution
- NIS Element full licence: AI, visualization, including of High content data (JOBS), STORM and image analysis
- Zen viewer
- ImageJ/Fiji: image processing and visualization freeware
- Omero: Data management freeware
- CTFire: analysis of polarization microscopy images freeware
- QPath: open source software for digital pathology and whole slide image analysis
- Ilastik: open source analysis software
- Napari: is a Python library for n-dimensional image visualisation, annotation, and analysis.
Access to image analysis platforms
The LCI Core Facility in-house analyst can also help you build your analysis pipeline.
Please contact us to request help.