Image analysis platforms: VDI and Remote Desktop

The LCI analysis software are located on 2 powerful servers which can be accessed from any computer.

VDI: less powerful and shared by several users but free. 

  • Imaris viewer
  • NIS Element full licence: AI, visualization, High content data (JOBS), STORM, image analysis
  • Zen viewer: Visualization and simple rendering
  • ImageJ/Fiji: image processing and visualization freeware
  • Cell Profiler: 5D rendering and analysis freeware
  • MatLab: custom-made analysis scripting
  • Python: custom-made analysis scripting
  • CTFire: analysis of polarization microscopy images freeware
  • Omero: Data management freeware

Remote Desktop: much more powerful and only one user at a time but there is a fee.

  • Imaris full licence, ImarisFileConverter, ImarisViewer
  • M2 Deconvolution
  • NIS Element full licence: AI, visualization, including of High content data (JOBS), STORM and image analysis
  • Zen viewer
  • ImageJ/Fiji: image processing and visualization freeware
  • Omero: Data management freeware
  • CTFire: analysis of polarization microscopy images freeware
  • QPath:  open source software for digital pathology and whole slide image analysis

How to access the LCI image analysis server

 

The LCI core facility in-house analyst can also help you build your analysis pipeline. Please contact us to request help.

GI
Content reviewer:
27-04-2023