Image analysis platforms: VDI and Remote Desktop

The LCI analysis software are located on 2 powerful servers which can be accessed from any computer.

VDI: less powerful and shared by several users but free. 

• Imaris viewer
• NIS Element full licence: AI, visualization, High content data (JOBS), STORM, image analysis
• Zen viewer: Visualization and simple rendering
• ImageJ/Fiji: image processing and visualization freeware
• Cell Profiler: 5D rendering and analysis freeware
• MatLab: custom-made analysis scripting
• Python: custom-made analysis scripting
• CTFire: analysis of polarization microscopy images freeware
• Omero: Data management freeware

Remote Desktop: much more powerful and only one user at a time but there is a fee.

• Imaris full licence, ImarisFileConverter, ImarisViewer
• M2 Deconvolution
• NIS Element full licence: AI, visualization, including of High content data (JOBS), STORM and image analysis
• Zen viewer
• ImageJ/Fiji: image processing and visualization freeware
• Omero: Data management freeware
• CTFire: analysis of polarization microscopy images freeware
• QPath:  open source software for digital pathology and whole slide image analysis

How to access the LCI image analysis server

The LCI core facility in-house analyst can also help you build your analysis pipeline. Please contact us to request help.