Image analysis
The LCI core facility in-house analyst will help you build your analysis pipeline. Please contact us to request help.
The LCI analysis software are located on 2 powerful servers which can be accessed from any computer.
VDI: less powerful and shared by several users but free.
- Imaris viewer
- NIS Element full licence: Visualization, including of High content data (JOBS) and image analysis
- Zen viewer: Visualization and simple rendering
- ImageJ/Fiji: image processing and visualization freeware
- Cell Profiler: 5D rendering and analysis freeware
- MatLab: custom-made analysis scripting
- Python: custom-made analysis scripting
- CTFire: analysis of polarization microscopy images freeware
- Omero: Data management freeware
Remote Desktop: much more powerful and only one user at a time but there is a fee.
- Imaris full licence, ImarisFileConverter, ImarisViewer
- M2 Deconvolution
- NIS Element viewer
- Zen viewer
- ImageJ/Fiji: image processing and visualization freeware
- JDK
- Omero: Data management freeware