Image Processing and Analysis at BIC
We use several image analysis tools for image processing, intensity measurements, object counting, creating movies and 3D models. As a user you can get access to all these services, conveniently located just next to the microscopes.
General Imaging analysis tools
All workstations have the vendor’s Lite versions of the acquisition software, plus ImageJ/Fiji, MATLAB, CellProfiler, QuPath. On WS2, WS3 and WS5 there is a link to the server with remote Imaris licenses. WS4 has Amira for data processing from light-sheet microscopy.
Special Imaging Analysis tools
- WS6 is a top-notch workstation and has the latest full Imaris installed and is the best option for Imaris work (vs Imaris work on the remote desktops)
- WS3 is also a top-notch workstation and has the latest AutoQuant installed (X3.1.3) for deconvolution
- WS4 is a workstation connected with LaVision UltraMicroscope II light sheet microscope and has Amira installed
We have several workstations with different capacities and sometimes unique software, for image processing and/or analysis (see detailed information about BIC instruments). They are free to use for BIC users but need a reservation.