About CBB

The Centre for Bioinformatics and Biostatistics (CBB) is a virtual centre located at the Karolinska Institutet’s (KI's) Campus Flemingsberg.

Photo: Erik Cronberg

The Centre for Bioinformatics and Biostatistics (CBB) is a virtual centre located at the Karolinska Institutet’s (KI's) Campus Flemingsberg. The centre offers expertise and scientific networking opportunities to the pre-clinical and clinical research environment. Activities of the centre include mentoring for early-stage researchers (PhD students and postdocs), support for project planning and grant writing, as well as seminars and discussion groups around bioinformatics and biostatistics methods and their application to biomedical data. 

History and relation to Clinicum

CBB is considered the Clinicum hub at Campus Flemingsberg. The Centre for Bioinformatics and Biostatistics (CBB) is in the startup phase since February 2021.

Relationship to KI core facilities

The centre keeps close relations with the existing KI core facilities and departments within the field. This includes close coordination to be able to refer requests appropriately to these core facilities. Redundancies of the services offered by existing KI core facilities and the services offered by CBB are kept a minimum.

Information meeting

CBB had a first information meeting on April 29th, 2021. A zoom recording from the meeting, as well as the presentation, can be found below.

Contact

Centre for Bioinformatics and Biostatistics
Department of Biosciences and Nutrition
Karolinska Institutet

Email: cbb@ki.se

Carsten Daub

Director CBB
08-524 812 24

Carsten Daub is an Associate Professor (“Docent” in the Swedish academic system) and group leader for the Clinical Transcriptomics research group at the Department of Biosciences and Nutrition at Karolinska Institutet. His bioinformatics expertise includes analysis of transcriptomics and epigenomics datasets, genome annotation and gene regulation.  Links:  https://www.daublab.org/

https://staff.ki.se/people/carsten-daub  

Hannes Hagström

Co-director CBB

Hannes Hagström is a consultant in Hepatology at the Karolinska University Hospital. He is also an associate professor and group leader for Hannes Hagström group (https://ki.se/en/medh/hagstrom-group) at Karolinska Institutet. His research is focused on clinical and epidemiological studies of liver diseases. 

Steering Group

A steering group has been appointed by Dean KI South Maria Eriksdotter. 

Janne Johansson

Chaiman CBB steering group
H2 Department of Biosciences and Nutrition

Annika Bergquist

Member CBB steering group
H7 Department of Medicine, Huddinge

Marie Evans

Member CBB steering group
H9 Department of Clinical Science, Intervention and Technology

Matti Sällberg

Member CBB steering group
H5 Department of Laboratory Medicine

Minutes CBB Steering Group Meetings

Affiliated Researchers

 

Anastasios Damdimopoulos

Bioinformatician
H2 Department of Biosciences and Nutrition

Davide Valentini

Statistician

Davide is a PhD statistician with many years of experience in working with biological, epidemiological, genetic, and social data of different kind and in various contexts. During the last years his work has been focused on the analysis of immunological and survival data of patients after cell-therapy and allogeneic stem cell transplantation. His other main interest is education: teaching and mentoring students, and organizing seminars and workshops.

Erik Lundgren

Research engineer
H2 Department of Biosciences and Nutrition

Ghada Nouairia

Bioinformatician

Ghada Nouairia is a computational biologist and a bioinformatician with experience in different computational methods (clustering, networks, phylogeny, etc.). She has also worked with a wide range of omics data including proteomics, transcriptomics, epigenomics and genomes.

Currently, her research is directed to clinical application for diagnosis and prognosis in oncology.

Henrike Häbel

Statistician

Henrike Häbel has a doctoral degree in mathematical statistics from Chalmers University of Technology and University of Gothenburg. Before joining Karolinska Institutet, she completed a post-doctoral fellowship at the Natural Resources Institute Finland. As part of the Medical Statistics Unit (Medstat), Department of Learning, Informatics, Management and Ethics (LIME) and the Centre for Bioinformatics and Biostatistics (CBB), Henrike mainly works with statistical consultation and teaching. Her main tasks include data management, survival and regression analysis in epidemiologic and population-based studies. Her research and teaching interests are in biostatistics, statistical epidemiology, spatial statistics and image analysis. Henrike has software experience in R, STATA, SAS and SPSS.

 

Laura Vossen-Engblom

Statistician

 

Laura is a biostatistician at the Karolinska University Hospital in Huddinge where her work involves data management, survival analysis and regression analysis of clinical trial data and register-based studies. She works mainly in R and Stata, but is also familiar with SPSS, GraphPad and Statistica. For CBB, Laura mentor several (medical) PhD students and teach in an upcoming biostatistics course. Laura has a doctoral degree in biomedicine from Uppsala University and a MSc and MEd (master in education at college level) from the University of Groningen, the Netherlands. 

Yitian Zhou

PhD, bioinformatician

My research focus is pharmacogenomic, i.e. study the impact of genetic variants on drug response. I work with variants data (particularly SNP data) a lot and have experience using bioinformatic tools to generate variant annotations, such as functional consequences, population-specific frequencies etc.

Financial support

CBB receives financial support from CIMED Infrastructure funding and from Karolinska Institutet.