Carsten Daub
Principal Researcher | Docent
E-mail: carsten.daub@ki.se
Telephone: +46852481224
Visiting address: Blickagången 16, 14152 Flemingsberg
Postal address: H7 Medicin, Huddinge, H7 GUT Daub, 171 77 Stockholm
About me
I am an Associate Professor (“Docent” in the Swedish academic system) and group leader for the Clinical Transcriptomics research group at the
Department of Biosciences and Nutrition at Karolinska Institutet (KI). My educational background is in Chemistry (Masters in 2000 at Technical University Berlin) and Bioinformatics (PhD in 2004 at Max-Planck-Institute in Golm). I spent two years as postdoc with Erik Sonnhammer at Karolinska Institutet 2004-2006 after which I went to work with Yoshihide Hayashizaki at RIKEN Yokohama. In 2007 I became Team Leader at RIKEN Omics Science Center (OSC) and was also leading the Bioinformatics Core Facility at RIKEN OSC as Facility Director since 2008. In 2012, I moved back to Karolinska Institutet and Science for Life Laboratory (SciLifeLab) to lead the Clinical Transcriptomics research group to improve the our understanding of gene regulation underlying diseases. Since 2022, I act as Director for the Center of Bioinformatics and Biostatistics at KI. Since 2024, I act as KI Scientific Director for SciLifeLab.
Research
Bioinformatics, Genomics, Spatial Transcriptomics, breast cancer.
Teaching
- *Supervision*
/Ongoing/
Since 2014, Niyaz Yoosuf, postdoc
Since 2015, Enrichetta Mileti, PhD student
Since 2015, Tahmina Akhter, PhD student
Since 2015, Abdul Kadir Mukarram, PhD student (to be registered 2015-11-30)
Since 2015, Matthias Hörtenhuber, PhD student (to be registered 2015-11-30)
/Completed/
2012-2014, Olga Hrydziuszko, postdoc
2012-2014, Nancy Yu, postdoc
2012-2013, Andrew Kwon, postdoc, RIKEN Yokohama
2011-2013, Jordan Ramilowski, postdoc, RIKEN Yokohama
2009-2011, Max Burroughs, postdoc, RIKEN Yokohama
2009-2013 Morana Vitezic, Karolinska Institutet PhD student with Carsten Daub
as main supervisor, working at RIKEN Yokohama, financed by RIKEN IPA
program
Articles
- Article: CLINICAL AND TRANSLATIONAL ALLERGY. 2025;15(9):e70108Kere MM; Bjorkander S; Merid SK; Hernandez-Pacheco N; Maier P; Merritt A-S; Bergstrom A; Kull I; Daub CO; Mjosberg J; Tibbitt CA; Melen E
- Article: SCIENTIFIC REPORTS. 2025;15(1):11327Boskovic N; Ivask M; Yazgeldi Gunaydin G; Yasar B; Katayama S; Salumets A; Org T; Kurg A; Lundin K; Tuuri T; Daub CO; Kere J
- Article: NATURE COMMUNICATIONS. 2024;15(1):9082DoGA Consortium
- Article: HELIYON. 2024;10(14):e34386Akhter T; Mileti E; Kere MM; Kolmert J; Konradsen JR; Hedlin G; Melen E; Daub CO
- Article: ISCIENCE. 2024;27(1):108638Emanuelsson EB; Arif M; Reitzner SM; Perez S; Lindholm ME; Mardinoglu A; Daub C; Sundberg CJ; Chapman MA
- Article: SCIENTIFIC REPORTS. 2023;13(1):10519Arora A; Becker M; Marques C; Oksanen M; Li D; Mastropasqua F; Watts ME; Arora M; Falk A; Daub CO; Lanekoff I; Tammimies K
- Article: NATURE GENETICS. 2022;54(7):1037-1050Baranasic D; Hortenhuber M; Balwierz PJ; Zehnder T; Mukarram AK; Nepal C; Varnai C; Hadzhiev Y; Jimenez-Gonzalez A; Li N; Wragg J; D'Orazio FM; Relic D; Pachkov M; Diaz N; Hernandez-Rodriguez B; Chen Z; Stoiber M; Dong M; Stevens I; Ross SE; Eagle A; Martin R; Obasaju O; Rastegar S; McGarvey AC; Kopp W; Chambers E; Wang D; Kim HR; Acemel RD; Naranjo S; Lapinski M; Chong V; Mathavan S; Peers B; Sauka-Spengler T; Vingron M; Carninci P; Ohler U; Lacadie SA; Burgess SM; Winata C; van Eeden F; Vaquerizas JM; Luis Gomez-Skarmeta J; Onichtchouk D; Brown BJ; Bogdanovic O; van Nimwegen E; Westerfield M; Wardle FC; Daub CO; Lenhard B; Muller F
- Article: NATURE GENETICS. 2022;54(3):283-294Sahu B; Hartonen T; Pihlajamaa P; Wei B; Dave K; Zhu F; Kaasinen E; Lidschreiber K; Lidschreiber M; Daub CO; Cramer P; Kivioja T; Taipale J
- Article: STAR PROTOCOLS. 2021;2(4):100995Ezer S; Yoshihara M; Katayama S; DoGA Consortium C; Daub C; Lohi H; Krjutskov K; Kere J
- Article: DIABETES. 2021;70(7):1486-1497Mileti E; Kwok KHM; Andersson DP; Mathelier A; Raman A; Backdahl J; Jalkanen J; Massier L; Thorell A; Gao H; Arner P; Mejhert N; Daub CO; Ryden M
- Article: MOLECULAR HUMAN REPRODUCTION. 2021;27(6):gaab035Corral-Vazquez C; Blanco J; Cigliano RA; Sarrate Z; Rivera-Egea R; Vidal F; Garrido N; Daub C; Anton E
- Article: PLOS ONE. 2021;16(4):e0250582Chireh A; Grankvist R; Sandell M; Mukarram AK; Arnberg F; Lundberg J; Daub CO; Holmin S
- Article: SCIENTIFIC REPORTS. 2020;10(1):8029Grankvist R; Chireh A; Sandell M; Mukarram AK; Jaff N; Berggren I; Persson H; Linde C; Arnberg F; Lundberg J; Ugander M; La Manno G; Jonsson S; Daub CO; Holmin S
- Article: GIGASCIENCE. 2020;9(3):giaa024Hortenhuber M; Mukarram AK; Stoiber MH; Brown JB; Daub CO
- Article: PLOS GENETICS. 2020;16(3):e1008659Kaukonen M; Quintero IB; Mukarram AK; Hytonen MK; Holopainen S; Wickstrom K; Kyostila K; Arumilli M; Jalomaki S; Daub CO; Kere J; Lohi H
- Article: BREAST CANCER RESEARCH. 2020;22(1):6Yoosuf N; Navarro JF; Salmen F; Stahl PL; Daub CO
- Article: BMC GENOMICS. 2019;20(1):718Ha TJ; Zhang PGY; Robert R; Yeung J; Swanson DJ; Mathelier A; Wasserman WW; Im S; Itoh M; Kawaji H; Lassmann T; Daub CO; Arner E; Carninci P; Hayashizaki Y; Forrest ARR; Goldowitz D
- Article: SCIENTIFIC REPORTS. 2018;8(1):13164Alhendi AMN; Patrikakis M; Daub CO; Kawaji H; Itoh M; de Hoon M; Carninci P; Hayashizaki Y; Arner E; Khachigian LM
- Article: OPEN BIOLOGY. 2018;8(8):180011Vacca A; Itoh M; Kawaji H; Arner E; Lassmann T; Daub CO; Carninci P; Forrest ARR; Hayashizaki Y; Aitken S; Semple CA
- Article: CEREBELLUM. 2018;17(3):308-325Zhang PGY; Yeung J; Gupta I; Ramirez M; Ha T; Swanson DJ; Nagao-Sato S; Itoh M; Kawaji H; Lassmann T; Daub CO; Arner E; de Hoon M; Carninci P; Forrest ARR; Hayashizaki Y; Goldowitz D
- Show more
All other publications
- Editorial: G3-GENES GENOMES GENETICS. 2020;10(11):3881Murgiano L; Becker D; Torjman D; Niggel JK; Milano A; Cullen C; Feng R; Wang F; Jagannathan V; Pearce-Kelling S; Katz ML; Leeb T; Aguirre GD; Kaukonen M; Quintero IB; Mukarram AK; Hytonen MK; Holopainen S; Wickstrom K; Kyostila K; Arumilli M; Jalomaki S; Daub CO; Kere J; Lohi H
- Editorial: PLOS COMPUTATIONAL BIOLOGY. 2020;16(10):e1008260Stevens I; Mukarram AK; Hortenhuber M; Meehan TF; Rung J; Daub CO
- Corrigendum: BMC GENOMICS. 2018;19(1):39Zhang P; Dimont E; Ha T; Swanson DJ; Itoh M; Kawaji H; Lassmann T; Daub CO; Arner E; Carninci P; Hayashizaki Y; Forrest ARR; Hide W; Goldowitz D
- Letter: NATURE BIOTECHNOLOGY. 2014;32(3):217-219Severin J; Lizio M; Harshbarger J; Kawaji H; Daub CO; Hayashizaki Y; Bertin N; Forrest ARR
- Corrigendum: CELL. 2010;141(2):369Ravasi T; Suzuki H; Cannistraci CV; Katayama S; Bajic VB; Tan K; Akalin A; Schmeier S; Kanamori-Katayama M; Bertin N; Carninci P; Daub CO; Forrest ARR; Gough J; Grimmond S; Han J-H; Hashimoto T; Hide W; Hofmann O; Kamburov A; Kaur M; Kawaji H; Kubosaki A; Lassmann T; van Nimwegen E; MacPherson CR; Ogawa C; Radovanovic A; Schwartz A; Teasdale RD; Tegner J; Lenhard B; Teichmann SA; Arakawa T; Ninomiya N; Murakami K; Tagami M; Fukuda S; Imamura K; Kai C; Ishihara R; Kitazume Y; Kawai J; Hume DA; Ideker T; Hayashizaki Y
- Corrigendum: NATURE GENETICS. 2009;41(7):859Taft RJ; Glazov EA; Cloonan N; Simons C; Stephen S; Faulkner GJ; Lassmann T; Forrest ARR; Grimmond SM; Schroder K; Irvine K; Arakawa T; Nakamura M; Kubosaki A; Hayashida K; Kawazu C; Murata M; Nishiyori H; Fukuda S; Kawai J; Daub CO; Hume DA; Suzuki H; Orlando V; Carninci P; Hayashizaki Y; Mattick JS
- Published conference paper: BIOINFORMATICS. 2002;18:S231-S240Steuer R; Kurths J; Daub CO; Weise J; Selbig J
Employments
- Principal Researcher, Department of Medicine, Huddinge, Karolinska Institutet, 2024-
Degrees and Education
- Docent, Karolinska Institutet, 2015
Supervision
Supervision to doctoral degree
- Morana Vitezic, Inferring Transcriptional Regulation on the Promoter Level and Its Application to Diseases, 2013