Carsten Daub
Principal Researcher
| Docent
E-mail: carsten.daub@ki.se
Telephone: +46852481224
Visiting address: Blickagången 16, 14152 Flemingsberg
Postal address: H7 Medicin, Huddinge, H7 BioNut Daub, 171 77 Stockholm
About me
- I am an Associate Professor (“Docent” in the Swedish academic system) and
group leader for the Clinical Transcriptomics research group [1] at the
Department of Biosciences and Nutrition at Karolinska Institutet. My
educational background is in Chemistry (Masters in 2000 at Technical
University Berlin) and Bioinformatics (PhD in 2004 at Max-Planck-Institute in
Golm). I spent two years as postdoc with Erik Sonnhammer at Karolinska
Institutet 2004-2006 after which I went to work with Yoshihide Hayashizaki at
RIKEN Yokohama. In 2007 I became Team Leader at RIKEN Omics Science Center
(OSC) and was also leading the Bioinformatics Core Facility at RIKEN OSC as
Facility Director since 2008. In 2012, I moved back to Karolinska Institutet
to lead the Clinical Transcriptomics research group to improve the
understanding of gene regulation underlying diseases.
[1] http://ki.se/en/bionut/clinical-transcriptomics-carsten-daub
Research
- *Publication summary*
Total number of peer-reviewed publications: 56, first author: 4, last
author: 13
H-index: 30 (Google scholar)
Total number of citations: > - 4000 (Google scholar)
Teaching
- *Supervision*
/Ongoing/
Since 2014, Niyaz Yoosuf, postdoc
Since 2015, Enrichetta Mileti, PhD student
Since 2015, Tahmina Akhter, PhD student
Since 2015, Abdul Kadir Mukarram, PhD student (to be registered 2015-11-30)
Since 2015, Matthias Hörtenhuber, PhD student (to be registered 2015-11-30)
/Completed/
2012-2014, Olga Hrydziuszko, postdoc
2012-2014, Nancy Yu, postdoc
2012-2013, Andrew Kwon, postdoc, RIKEN Yokohama
2011-2013, Jordan Ramilowski, postdoc, RIKEN Yokohama
2009-2011, Max Burroughs, postdoc, RIKEN Yokohama
2009-2013 Morana Vitezic, Karolinska Institutet PhD student with Carsten Daub
as main supervisor, working at RIKEN Yokohama, financed by RIKEN IPA
program
Articles
-
Article: ISCIENCE. 2024;27(1):108638
-
Article: SCIENTIFIC REPORTS. 2023;13(1):10519
-
Article: NATURE GENETICS. 2022;54(7):1037-1050
-
Article: NATURE GENETICS. 2022;54(3):283-294
-
Article: STAR PROTOCOLS. 2021;2(4):100995
-
Article: DIABETES. 2021;70(7):1486-1497
-
Article: MOLECULAR HUMAN REPRODUCTION. 2021;27(6):gaab035
-
Article: PLOS ONE. 2021;16(4):e0250582
-
Article: SCIENTIFIC REPORTS. 2020;10(1):8029
-
Article: GIGASCIENCE. 2020;9(3):giaa024
-
Article: PLOS GENETICS. 2020;16(3):e1008659
-
Article: BREAST CANCER RESEARCH. 2020;22(1):6
-
Article: BMC GENOMICS. 2019;20(1):718
-
Article: SCIENTIFIC REPORTS. 2018;8(1):13164
-
Article: OPEN BIOLOGY. 2018;8(8):180011
-
Article: CEREBELLUM. 2018;17(3):308-325
-
Article: AMERICAN JOURNAL OF HYPERTENSION. 2018;31(4):450-457
-
Article: BMC GENOMICS. 2018;19(1):181
-
Article: PLOS COMPUTATIONAL BIOLOGY. 2018;14(3):e1005934
-
Article: EBIOMEDICINE. 2017;24:257-266
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Article: SCIENTIFIC REPORTS. 2017;7(1):11458
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Article: NATURE BIOTECHNOLOGY. 2017;35(9):872-878
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Article: SCIENTIFIC DATA. 2017;4:170112
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Article: NATURE. 2017;543(7644):199-204
-
Article: PLOS GENETICS. 2017;13(3):e1006641
-
Article: DIABETES. 2017;66(1):218-230
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Article: CELL REPORTS. 2016;16(9):2317-2326
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Article: JOURNAL OF CELL SCIENCE. 2016;129(13):2573-2585
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Article: NATURE GENETICS. 2016;48(3):331-335
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Article: CELL REPORTS. 2015;13(7):1493-1504
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Article: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. 2015;136(3):638-648
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Article: NUCLEIC ACIDS RESEARCH. 2015;43(14):6787-6798
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Article: SCIENTIFIC REPORTS. 2015;5:11999
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Article: PLOS COMPUTATIONAL BIOLOGY. 2015;11(4):e1004217
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Article: SCIENCE. 2015;347(6225):1010-1014
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Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2015;16(1):1192-1208
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Article: GENOME BIOLOGY. 2015;16(1):22
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Article: PLOS ONE. 2015;10(12):e0144176
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Article: GENOME BIOLOGY. 2014;15(7):413
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Article: CELL METABOLISM. 2014;19(6):981-992
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Article: BMC BIOINFORMATICS. 2014;15:144
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Article: BLOOD. 2014;123(17):e46-e57
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Article: DIABETES. 2014;63(4):1248-1258
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Article: NATURE. 2014;507(7493):462-470
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Article: NATURE. 2014;507(7493):455-461
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Article: BMC GENOMICS. 2014;15:120
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Article: FRONTIERS IN CELLULAR NEUROSCIENCE. 2014;8:41
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Article: NEUROBIOLOGY OF AGING. 2013;34(7):1825-1836
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Article: PLANT AND CELL PHYSIOLOGY. 2013;54(5):697-710
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Article: BIOLOGICAL PSYCHIATRY. 2013;73(6):583-590
-
Article: FRONTIERS IN GENETICS. 2013;4:209
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Article: DIABETES. 2012;61(8):1986-1993
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Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2012;109(16):E944-E953
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Article: GENOME RESEARCH. 2012;22(3):486-497
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Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2012;109(7):2479-2484
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Article: NUCLEIC ACIDS RESEARCH. 2012;40(4):1424-1437
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Article: PLOS NEGLECTED TROPICAL DISEASES. 2011;5(8):e1283
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Article: GENOME RESEARCH. 2011;21(7):1150-1159
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Article: NUCLEIC ACIDS RESEARCH. 2011;39(9):e59
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Article: BIOINFORMATICS. 2011;27(1):130-131
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Article: NUCLEIC ACIDS RESEARCH. 2011;39(Database issue):D856-D860
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Article: NUCLEIC ACIDS RESEARCH. 2010;38(22):8141-8148
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Article: GENOME RESEARCH. 2010;20(10):1398-1410
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Article: NATURE METHODS. 2010;7(7):528-534
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Article: BMC GENOMICS. 2010;11:257
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Article: CELL. 2010;140(5):744-752
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Article: GENOME RESEARCH. 2010;20(2):257-264
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Article: BIOINFORMATICS. 2010;26(1):125-126
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Article: BIOINFORMATICS. 2009;25(21):2839-2840
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Article: BIOINFORMATICS. 2009;25(19):2613-2614
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Article: PLOS ONE. 2009;4(8):e6677
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Article: BMC BIOINFORMATICS. 2009;10:133
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Article: NATURE GENETICS. 2009;41(5):572-578
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Article: NATURE GENETICS. 2009;41(5):563-571
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Article: NATURE GENETICS. 2009;41(5):553-562
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Article: GENOME RESEARCH. 2009;19(2):255-265
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Article: GENOME BIOLOGY. 2009;10(7):R79
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Article: GENOME BIOLOGY. 2009;10(4):R40
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Article: GENOME BIOLOGY. 2009;10(4):R39
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Article: GENOME BIOLOGY. 2009;10(4):R38
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Article: BMC SYSTEMS BIOLOGY. 2008;2:81
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Article: BMC GENOMICS. 2008;9:157
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Article: MOLECULAR BIOLOGY AND EVOLUTION. 2006;23(7):1406-1413
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Article: JOURNAL OF EXPERIMENTAL BOTANY. 2005;56(417):1887-1896
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Article: BMC BIOINFORMATICS. 2004;5:118
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Article: BIOINFORMATICS. 2003;19(17):2332-2333
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Article: PHYSICA B-CONDENSED MATTER. 2000;291(3-4):314-316
- Show more
All other publications
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Editorial comment: G3-GENES GENOMES GENETICS. 2020;10(11):3881
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Editorial comment: PLOS COMPUTATIONAL BIOLOGY. 2020;16(10):e1008260
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Corrigendum: BMC GENOMICS. 2018;19(1):39
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Letter: NATURE BIOTECHNOLOGY. 2014;32(3):217-219
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Corrigendum: CELL. 2010;141(2):369
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Corrigendum: NATURE GENETICS. 2009;41(7):859
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Published conference paper: BIOINFORMATICS. 2002;18:S231-S240
Employments
- Principal Researcher, Department of Medicine, Huddinge, Karolinska Institutet, 2024-
Degrees and Education
- Docent, Karolinska Institutet, 2015