Soham Gupta

Publikationer
Forskningsbidrag
Populärvetenskap och samverkan

Artiklar

Article: VIRUS RESEARCH. 2024;341:199306
Temporal cytokine storm dynamics in dengue infection predicts severity
Bhatt P; Varma M; Sood V; Ambikan A; Jayaram A; Babu N; Gupta S; Mukhopadhyay C; Neogi U
Article: GENOME BIOLOGY. 2023;24(1):237
Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections
Sounart H; Lazar E; Masarapu Y; Wu J; Varkonyi T; Glasz T; Kiss A; Borgstrom E; Hill A; Rezene S; Gupta S; Jurek A; Niesnerova A; Druid H; Bergmann O; Giacomello S
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(37):e2304722120
Systems-level temporal immune- metabolic profile in Crimean-Congo hemorrhagic fever virus infection
Ambikan AT; Elaldi N; Akusjaervi SS; Bagci B; Pektas AN; Hewson R; Bagci G; Arasli M; Appelberg S; Mardinoglu A; Sood V; Vegvari A; Benfeitas R; Gupta S; Cetin I; Mirazimi A; Neogi U
Article: CELL SYSTEMS. 2022;13(8):665-681.e4
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity
Ambikan AT; Yang H; Krishnan S; Akusjarvi SS; Gupta S; Lourda M; Sperk M; Arif M; Zhang C; Nordqvist H; Ponnan SM; Sonnerborg A; Treutiger CJ; O'Mahony L; Mardinoglu A; Benfeitas R; Neogi U
Article: ELIFE. 2022;11:e76071
Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target
Neogi U; Elaldi N; Appelberg S; Ambikan A; Kennedy E; Dowall S; Bagci BK; Gupta S; Rodriguez JE; Svensson-Akusjarvi S; Monteil V; Vegvari A; Benfeitas R; Banerjea A; Weber F; Hewson R; Mirazimi A
Article: COMMUNICATIONS BIOLOGY. 2022;5(1):357
Peripheral blood CD4⁺CCR6⁺ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals
Svensson Akusjarvi S; Krishnan S; Jutte BB; Ambikan AT; Gupta S; Rodriguez JE; Vegvari A; Sperk M; Nowak P; Vesterbacka J; Svensson JP; Sonnerborg A; Neogi U
Article: VIROLOGY. 2022;569:13-28
Azadirachta indica A. Juss bark extract and its Nimbin isomers restrict β-coronaviral infection and replication
Sarkar L; Oko L; Gupta S; Bubak AN; Das B; Gupta P; Safiriyu AA; Singhal C; Neogi U; Bloom D; Banerjee A; Mahalingam R; Cohrs RJ; Koval M; Shindler KS; Pal D; Nagel M; Das Sarma J
Article: ISCIENCE. 2022;25(1):103607
Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling
Akusjarvi SS; Ambikan AT; Krishnan S; Gupta S; Sperk M; Vegvari A; Mikaeloff F; Healy K; Vesterbacka J; Nowak P; Sonnerborg A; Neogi U
Article: COMMUNICATIONS BIOLOGY. 2022;5(1):27
Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection
Mikaeloff F; Akusjarvi SS; Ikomey GM; Krishnan S; Sperk M; Gupta S; Magdaleno GDV; Escos A; Lyonga E; Okomo MC; Tagne CT; Babu H; Lorson CL; Vegvari A; Banerjea AC; Kele J; Hanna LE; Singh K; de Magalhaes JP; Benfeitas R; Neogi U
Article: FRONTIERS IN IMMUNOLOGY. 2022;13:1002823
ZC3H11A loss of function enhances NF-?B signaling through defective I?Ba protein expression
Darweesh M; Younis S; Hajikhezri Z; Ali A; Jin C; Punga T; Gupta S; Essand M; Andersson L; Akusjarvi G
Article: AUTOPHAGY. 2021;17(11):3461-3474
The Epstein-Barr virus deubiquitinase BPLF1 targets SQSTM1/p62 to inhibit selective autophagy
Yla-Anttila P; Gupta S; Masucci MG
Article: PLOS PATHOGENS. 2021;17(9):e1009954
The Epstein-Barr virus deubiquitinating enzyme BPLF1 regulates the activity of topoisomerase II during productive infection
Li J; Nagy N; Liu J; Gupta S; Frisan T; Hennig T; Cameron DP; Baranello L; Masucci MG
Article: ISCIENCE. 2021;24(5):102420
Cell-type-resolved quantitative proteomics map of interferon response against SARS-CoV-2
Saccon E; Chen X; Mikaeloff F; Rodriguez JE; Szekely L; Vinhas BS; Krishnan S; Byrareddy SN; Frisan T; Vegvari A; Mirazimi A; Neogi U; Gupta S
Article: CELL DEATH DISCOVERY. 2021;7(1):114
Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells
Chen X; Saccon E; Appelberg KS; Mikaeloff F; Rodriguez JE; Vinhas BS; Frisan T; Vegvari A; Mirazimi A; Neogi U; Gupta S
Article: HELIYON. 2021;7(5):e07134
Pulmonary stromal expansion and intra-alveolar coagulation are primary causes of COVID-19 death
Szekely L; Bozoky B; Bendek M; Ostad M; Lavignasse P; Haag L; Wu J; Jing X; Gupta S; Saccon E; Sonnerberg A; Cao Y; Bjornstedt M; Szakos A
Article: BMC INFECTIOUS DISEASES. 2021;21(1):214
Increased acquired protease inhibitor drug resistance mutations in minor HIV-1 quasispecies from infected patients suspected of failing on national second-line therapy in South Africa
Obasa AE; Ambikan AT; Gupta S; Neogi U; Jacobs GB
Article: MOLECULAR & CELLULAR PROTEOMICS. 2021;20:100159
Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication
Krishnan S; Nordqvist H; Ambikan AT; Gupta S; Sperk M; Svensson-Akusjarvi S; Mikaeloff F; Benfeitas R; Saccon E; Ponnan SM; Rodriguez JE; Nikouyan N; Odeh A; Ahlen G; Asghar M; Sallberg M; Vesterbacka J; Nowak P; Vegvari A; Sonnerborg A; Treutiger CJ; Neogi U
Article: EMERGING MICROBES AND INFECTIONS. 2020;9(1):1748-1760
Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells
Appelberg S; Gupta S; Svensson Akusjarvi S; Ambikan AT; Mikaeloff F; Saccon E; Vegvari A; Benfeitas R; Sperk M; Stahlberg M; Krishnan S; Singh K; Penninger JM; Mirazimi A; Neogi U
Article: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 2020;18:3734-3744
In silico and in vitro studies reveal complement system drives coagulation cascade in SARS-CoV-2 pathogenesis
Tiwari R; Mishra AR; Mikaeloff F; Gupta S; Mirazimi A; Byrareddy SN; Neogi U; Nayak D
Article: FRONTIERS IN IMMUNOLOGY. 2020;11:437
Interaction With 14-3-3 Correlates With Inactivation of the RIG-I Signalosome by Herpesvirus Ubiquitin Deconjugases
Gupta S; Yla-Anttila P; Sandalova T; Achour A; Masucci MG
Article: PLOS PATHOGENS. 2019;15(11):e1008146
14-3-3 scaffold proteins mediate the inactivation of trim25 and inhibition of the type I interferon response by herpesvirus deconjugases
Gupta S; Yla-Anttila P; Sandalova T; Sun R; Achour A; Masucci MG
Article: PLOS PATHOGENS. 2018;14(1):e1006852
Herpesvirus deconjugases inhibit the IFN response by promoting TRIM25 autoubiquitination and functional inactivation of the RIG-I signalosome
Gupta S; Yla-Anttila P; Callegari S; Tsai M-H; Delecluse H-J; Masucci MG
Article: BMJ OPEN. 2016;6(1):e008795
Can HIV reverse transcriptase activity assay be a low-cost alternative for viral load monitoring in resource-limited settings?
Gupta S; Palchaudhuri R; Neogi U; Srinivasa H; Ashorn P; De Costa A; Kallander C; Shet A
Article: TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE. 2015;109(12):769-774
Prevalence of virulence factors and phylogenetic characterization of uropathogenic Escherichia coli causing urinary tract infection in patients with and without diabetes mellitus
Harwalkar A; Gupta S; Rao A; Srinivasa H
Article: INTERVIROLOGY. 2015;58(1):1-5
Performance of Genotypic Tools for Prediction of Tropism in HIV-1 Subtype C V3 Loop Sequences
Gupta S; Neogi U; Srinivasa H; Shet A
Article: THE BMJ. 2014;349:g5978
Effect of mobile telephone reminders on treatment outcome in HIV: evidence from a randomised controlled trial in India
Shet A; De Costa A; Kumarasamy N; Rodrigues R; Rewari BB; Ashorn P; Eriksson B; Diwan V
Article: GERMS. 2014;4(3):70-72
Daptomycin resistance in methicillin-resistant Staphylococcus aureus: a report from Southern India.
Vamsimohan A; Gupta S; Muralidharan S
Article: JOURNAL OF INFECTION AND PUBLIC HEALTH. 2014;7(5):413-419
Lower prevalence of hlyD, papC and cnf-1 genes in ciprofloxacin-resistant uropathogenic Escherichia coli than their susceptible counterparts isolated from southern India
Harwalkar A; Gupta S; Rao A; Srinivasa H
Article: JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES (1999). 2014;65(4):397-404
HIV-1 Coreceptor Tropism in India: Increasing Proportion of X4-Tropism in Subtype C Strains Over Two Decades
Gupta S; Neogi U; Srinivasa H; Banerjea AC; Shet A
Article: INTERNATIONAL JOURNAL OF BIOMATERIALS. 2014;2014:383756-6
In Vitro Evaluation of the Antimicrobial Efficacy of Four Endodontic Biomaterials against Enterococcus faecalis, Candida albicans, and Staphylococcus aureus.
Nirupama DN; Nainan MT; Ramaswamy R; Muralidharan S; Usha HHL; Sharma R; Gupta S
Article: ANTIVIRAL THERAPY. 2014;19(8):813-818
Limited evolution but increasing trends of primary non-nucleoside reverse transcriptase inhibitor resistance mutations in therapy-naive HIV-1-infected individuals in India
Neogi U; Gupta S; Palchaudhuri R; Rao SD; Shastri S; Diwan V; Laishram RS; De Costa A; Shet A
Article: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 2013;68(9):2003-2006
High concordance of genotypic coreceptor prediction in plasma-viral RNA and proviral DNA of HIV-1 subtype C: implications for use of whole blood DNA in resource-limited settings
Gupta S; Neogi U; Srinivasa H; Shet A
Article: JOURNAL OF INFECTION AND PUBLIC HEALTH. 2013;6(2):108-114
The detection of ESBL-producing Escherichia coli in patients with symptomatic urinary tract infections using different diffusion methods in a rural setting
Harwalkar A; Sataraddi J; Gupta S; Yoganand R; Rao A; Srinivasa H
Journal article: CLINICAL MICROBIOLOGY NEWSLETTER. 2013;35(3):25-26
Candida tropicalis Recovered from a Bone Marrow Aspirate in a Diabetic Patient
Aruna C; Savio J; Gupta S; Muralidharan S
Article: INTERNATIONAL JOURNAL OF MICROBIOLOGY RESEARCH. 2012;136(6):956-962
Dried blood spot HIV-1 RNA quantification: A useful tool for viral load monitoring among HIV-infected individuals in India
Neogi U; Gupta S; Rodridges R; Sahoo PN; Rao SD; Rewari BB; Shastri S; De Costa A; Shet A
Article: AIDS RESEARCH AND HUMAN RETROVIRUSES. 2012;28(9):1152-1156
Genetic Characterization of HIV Type 1 Tat Exon 1 from a Southern Indian Clinical Cohort: Identification of Unique Epidemiological Signature Residues
Neogi U; Gupta S; Sahoo PN; Shet A; Rao SD; Ranga U; Prasad VR
Journal article: CLINICAL MICROBIOLOGY NEWSLETTER. 2012;34(17):141-142
Candida tropicalis Recovered from a Bone Marrow Aspirate in a Diabetic Patient
Aruna C; Savio J; Gupta S; Muralidharan S
Article: TROPICAL DOCTOR. 2012;42(1):35-37
Multi-drug-resistant tuberculosis: the experience of an urban tertiary care hospital in South India using automated BACTEC 460 TB
Mishra B; Rockey SM; Gupta S; Srinivasa H; Muralidharan S
Article: PLOS ONE. 2012;7(6):e39819
Molecular Epidemiology of HIV-1 Subtypes in India: Origin and Evolutionary History of the Predominant Subtype C
Neogi U; Bontell I; Shet A; De Costa A; Gupta S; Diwan V; Laishram RS; Wanchu A; Ranga U; Banerjea AC; Sonnerborg A
Article: INDIAN JOURNAL OF PEDIATRICS. 2011;78(12):1495-1497
Prevalence of Respiratory Syncytial Virus Infection among Hospitalized Children Presenting with Acute Lower Respiratory Tract Infections
Gupta S; Shamsundar R; Shet A; Chawan R; Srinivasa H
Article: JOURNAL OF INFECTION AND PUBLIC HEALTH. 2011;4(3):140-144
Diabetes mellitus and HIV as co-morbidities in tuberculosis patients of rural south India.
Gupta S; Shenoy VP; Bairy I; Srinivasa H; Mukhopadhyay C
Article: INDIAN JOURNAL OF PATHOLOGY AND MICROBIOLOGY. 2011;54(3):569-571
In vitro production of biofilm in a flow cell system in a strain of Pseudomonas aeruginosa and Staphylococcus aureus and determination of efficiency of ciprofloxacin against them
Gupta S; Agarwal S; Sahoo DR; Muralidharan S
Article: REVISTA DA SOCIEDADE BRASILEIRA DE MEDICINA TROPICAL. 2011;44(3):309-312
Community prevalence of methicillin and vancomycin resistant Staphylococcus aureus in and around Bangalore, southern India
Goud R; Gupta S; Neogi U; Agarwal D; Naidu K; Chalannavar R; Subhaschandra G
Article: NEPHROLOGY. 2011;16(1):63-67
Epidemiology of culture isolates from peritoneal dialysis peritonitis patients in southern India using an automated blood culture system to culture peritoneal dialysate
Gupta S; Muralidharan S; Gokulnath; Srinivasa H
Article: CLINICAL LABORATORY. 2011;57(9-10):767-769
Misidentification of a Commensal Inactive Escherichia Coli as Shigella Sonnei by an Automated System in a Critically III Patient
Gupta S; Aruna C; Muralidharan S
Article: TROPICAL MEDICINE AND INTERNATIONAL HEALTH. 2011;16(1):74-78
Role of risk factors and socio-economic status in pulmonary tuberculosis: a search for the root cause in patients in a tertiary care hospital, South India
Gupta S; Shenoy VP; Mukhopadhyay C; Bairy I; Muralidharan S
Article: INDIAN JOURNAL OF MEDICAL SCIENCES. 2010;64(12):553-556
Ceftriaxone resistant Shigella flexneri, an emerging problem.
Gupta S; Mishra B; Muralidharan S; Srinivasa H
Article: AIDS RESEARCH AND HUMAN RETROVIRUSES. 2010;26(10):1097-1101
Naturally Occurring Polymorphisms and Primary Drug Resistance Profile Among Antiretroviral-Naive Individuals in Bangalore, India
Neogi U; Prarthana BS; Gupta S; D'souza G; De Costa A; Kuttiatt VS; Arumugam K; Shet A
Article: JORNAL BRASILEIRO DE PNEUMOLOGIA. 2010;36(5):612-616
Comparison among three cold staining methods in the primary diagnosis of tuberculosis: a pilot study
Gupta S; Shenoy VP; Bairy I; Muralidharan S
Journal article: ASIAN PACIFIC JOURNAL OF TROPICAL MEDICINE. 2010;3(4):328-329
Diagnostic efficacy of Ziehl-Neelsen method against fluorescent microscopy in detection of acid fast bacilli
Gupta S; Shenoy VP; Bairy I; Muralidharan S
Article: SOUTHEAST ASIAN JOURNAL OF TROPICAL MEDICINE AND PUBLIC HEALTH. 2009;40(4):765-769
COMPARATIVE EVALUATION OF TWO COLD STAINING METHODS WITH THE ZIEHL-NEELSEN METHOD FOR THE DIAGNOSIS OF TUBERCULOSIS
Gupta S; Prasad V; Bairy I; Muralidharan S
Article: JOURNAL OF INFECTION IN DEVELOPING COUNTRIES. 2009;3(2):83-87
PCR for M. tuberculosis in tissue samples
Chawla K; Gupta S; Mukhopadhyay C; Rao PS; Bhat SS
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Editorial comment: FRONTIERS IN IMMUNOLOGY. 2023;14:1148296
Ubiquitin and ubiquitin-like modifications in viral infection and innate immunity
Sparrer KMJ; Bergeron E; Gupta S
Review: JOURNAL OF PROTEOME RESEARCH. 2020;19(11):4259-4274
Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses
Sperk M; van Domselaar R; Rodriguez JE; Mikaeloff F; Vinhas BS; Saccon E; Sonnerborg A; Singh K; Gupta S; Vegvari A; Neogi U
Editorial comment: ECLINICALMEDICINE. 2020;18:100251
Following the path: Increasing trends of HIV-1 drug resistance in China
Gupta S; Neogi U
Editorial comment: MICROBIAL CELL. 2018;5(5):259-261
A novel mechanism for regulation of the type I IFN response by herpesvirus deconjugases
Gupta S; Yla-Anttila P; Masucci MG
Letter: CLINICAL LABORATORY. 2013;59(7-8):929-931
Rapid Detection of Respiratory Syncytial Virus (RSV) in Children with Acute Lower Respiratory Tract Infections: A Pilot Evaluation of an Immuno-Chromatographic Rapid Antigen Detection Method
Gupta S; Shamsundar R; Shet A; Srinivasa H
Letter: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 2012;67(5):1293-1295
In vitro activity of tigecycline against multidrug-resistant Gram-negative blood culture isolates from critically ill patients
Gupta S; Aruna C; Nagaraj S; Dias M; Muralidharan S

Forskningsbidrag

ISG15 at the interface of innate immune response and metabolic pathways during respiratory viral infections
Swedish Research Council
1 January 2022 - 31 December 2025

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