Translational Microbiome Research and Pandemic Preparedness – Lars Engstrand group

Publications

Selected publications

• Article: GUT MICROBES. 2024;16(1):2356275

  The protective role of commensal gut microbes and their metabolites against bacterial pathogens

  Cheng L; Correia MSP; Higdon SM; Garcia FR; Tsiara I; Joffre E; Sjoling A; Boulund F; Norin EL; Engstrand L; Globisch D; Du J
• Article: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2024;103(8):1596-1605

  Antibiotic or gastric acid inhibitor use during pregnancy and postpartum depression: Population-based cohort study

  Gudnadottir U; Kamau N; Fornes R; Nguyen MH; Callens S; Fransson E; Engstrand L; Bruyndonckx R; Brusselaers N
• Article: BMJ OPEN. 2024;14(7):e079591

  Maintenance proton pump inhibitor use and risk of colorectal cancer: a Swedish retrospective cohort study

  Liu Q; Wang X; Engstrand L; Sadr-Azodi O; Fall K; Brusselaers N
• Letter: GUT. 2024;73(7):1214-1215

  Clarithromycin-containing triple therapy for Helicobacter pylori eradication is inducing increased long-term resistant bacteria communities in the gut

  Sjomina O; Vangravs R; Leonova E; Polaka I; Pupola D; Civkulis K; Jeniceka A; Parsutins S; Stonans I; Park JY; Engstrand L; Leja M
• Article: BMC INFECTIOUS DISEASES. 2024;24(1):468

  Clostridioides difficile infection, recurrence and the associated healthcare consumption in Sweden between 2006 and 2019: a population-based cohort study

  Boven A; Simin J; Andersson FL; Vlieghe E; Callens S; Zeebari Z; Engstrand L; Brusselaers N
• Article: INFECTION. 2024;52(2):649-660

  Clostridioides difficile recurrence in individuals with and without cancer: a Swedish population-based cohort study

  Mpakaniye P; Boven A; Callens S; Engstrand L; Vlieghe E; Brusselaers N
• Letter: LANCET REGIONAL HEALTH-EUROPE. 2024;38:100872

  Prevalence of SARS-CoV-2 infections among Swedish healthcare workers on duty in December 2023

  Aguilera K; Bladh O; Marking U; Norin NG; Rihani A; Ujvari D; Ning FC; Klingstroem J; Havervall S; Aberg M; Blom K; Alm JJ; Thalin C
• Article: BRAIN BEHAVIOR AND IMMUNITY. 2024;117:298-309

  Differences in the gut microbiome of young adults with schizophrenia spectrum disorder: using machine learning to distinguish cases from controls

  Stiernborg M; Prast-Nielsen S; Melas PA; Skott M; Millischer V; Boulund F; Forsell Y; Lavebratt C
• Article: CELL HOST & MICROBE. 2024;32(1):106-116.e6

  Precision microbial intervention improves social behavior but not autism severity: A pilot double-blind randomized placebo-controlled trial

  Mazzone L; Dooling SW; Volpe E; Uljarevic M; Waters JL; Sabatini A; Arturi L; Abate R; Riccioni A; Siracusano M; Pereira M; Engstrand L; Cristofori F; Adduce D; Francavilla R; Costa-Mattioli M; Hardan AY
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2024;14:1324794

  Investigations of microbiota composition and neuroactive pathways in association with symptoms of stress and depression in a cohort of healthy women

  Bashir Z; Hugerth LW; Krog MC; Prast-Nielsen S; Edfeldt G; Boulund F; Schacht SR; Tetens I; Engstrand L; Schuppe-Koistinen I; Fransson E; Nielsen HS
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2023;58(11):1246-1252

  Evaluation of plasma Short chain fatty acid levels as markers for Inflammatory bowel disease

  Kiasat A; Rautiainen S; Prast-Nielsen S; Engstrand L; Schuppe-Koistinen I; Gustafsson UOO; Granstrom AL
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2023;58(10):1131-1138

  Diverticulosis is not associated with altered gut microbiota nor is it predictive of future diverticulitis: a population-based colonoscopy study

  Alexandersson BT; Hugerth LW; Hedin C; Forsberg A; Talley NJ; Agreus L; Jarbrink-Sehgal E; Engstrand L; Andreasson A; Schmidt PT
• Article: LIVER INTERNATIONAL. 2023;43(10):2186-2197

  Antibiotic use and development of nonalcoholic fatty liver disease: A population-based case-control study

  Ebrahimi F; Simon TG; Hagstrom H; Sun J; Bergman D; Forss A; Roelstraete B; Engstrand L; Ludvigsson JF
• Editorial comment: IMETA. 2023;2(3):e108

  The salivary microbiota is altered in cervical dysplasia patients and influenced by conization

  Wu S; Cheng L; Pennhag AAL; Seifert M; Guonadottir U; Engstrand L; Mints M; Andersson S; Du J
• Article: MICROBIOLOGY SPECTRUM. 2023;11(3):e0506622-e05022

  The Local Tumor Microbiome Is Associated with Survival in Late-Stage Colorectal Cancer Patients

  Debelius JW; Engstrand L; Matussek A; Brusselaers N; Morton JT; Stenmarker M; Olsen RS
• Meeting abstract: ANNALS OF ONCOLOGY. 2023;34:S8

  Maintenance proton pump inhibitor usage and risk of colorectal cancer: A population-based Swedish cohort study

  Liu Q; Wang X; Engstrand L; Sadr-Azodi O; Fall K; Brusselaers N
• Article: NATURE MICROBIOLOGY. 2023;8(6):1123-1136

  Atlas of mRNA translation and decay for bacteria

  Huch S; Nersisyan L; Ropat M; Barrett D; Wu M; Wang J; Valeriano VD; Vardazaryan N; Huerta-Cepas J; Wei W; Du J; Steinmetz LM; Engstrand L; Pelechano V
• Article: CHEMICAL COMMUNICATIONS. 2023;59(39):5843-5846

  Sensitive quantification of short-chain fatty acids combined with global metabolomics in microbiome cultures

  Lin W; Garcia FR; Norin EL; Kart D; Engstrand L; Du J; Globisch D
• Article: MICROBIAL CELL FACTORIES. 2023;22(1):96

  Mucosal immunization with lactiplantibacillus plantarum-displaying recombinant SARS-CoV-2 epitopes on the surface induces humoral and mucosal immune responses in mice

  Hwang I-C; Valeriano VD; Song JH; Pereira M; Oh JK; Han K; Engstrand L; Kang D-K
• Article: NATURE COMMUNICATIONS. 2023;14(1):2250

  Identification of three bacterial species associated with increased appendicular lean mass: the HUNT study

  Grahnemo L; Nethander M; Coward E; Gabrielsen ME; Sree S; Billod J-M; Sjogren K; Engstrand L; Dekkers KF; Fall T; Langhammer A; Hveem K; Ohlsson C
• Article: BMC PREGNANCY AND CHILDBIRTH. 2023;23(1):153

  Pre-pregnancy complications-associated factors and wellbeing in early pregnancy: a Swedish cohort study

  Gudnadottir U; Du J; Hugerth LWW; Engstrand L; Schuppe-Koistinen I; Itzel EW; Fransson E; Brusselaers N
• Article: JOURNAL OF MEDICINAL FOOD. 2023;26(3):185-192

  Effects of Consuming Fermented Fish (Surstromming) on the Fecal Microflora in Healthy Individuals

  Kallner A; Debelius J; Schuppe-Koistinen I; Pereira M; Engstrand L
• Article: JCI INSIGHT. 2023;8(4):e161042

  Metagenomic and single-cell RNA-Seq survey of the Helicobacter pylori-infected stomach in asymptomatic individuals

  Sorini C; Tripathi KP; Wu S; Higdon SM; Wang J; Cheng L; Banerjee S; Reinhardt A; Kreslavsky T; Thorell A; Engstrand L; Du J; Villablanca EJ
• Article: COMMUNICATIONS BIOLOGY. 2023;6(1):20

  High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice

  Hases L; Stepanauskaite L; Birgersson M; Brusselaers N; Schuppe-Koistinen I; Archer A; Engstrand L; Williams C
• Article: RESEARCH. 2023;6:0058

  A 3D Bioprinted Gut Anaerobic Model for Studying Bacteria-Host Interactions

  Cheng L; Liu T; Liu Q; Lian L; Tang G; Mille LS; Garcia FR; Engstrand L; Zhang YS; Du J
• Conference publication: PHARMACOEPIDEMIOLOGY AND DRUG SAFETY. 2023;32:77-78

  Maintenance proton pump inhibitor usage and risk of colorectal cancer: A population-based Swedish cohort study

  Liu Q; Wang X; Engstrand L; Sadr-Azodi O; Fall K; Brusselaers N
• Conference publication: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2023;102:90

  Restoration of microbiota in newborns (ROMANS) -a randomized placebo-controlled multicenter allergy prevention study

  Fransson E; Hamsten M; Jonsson M; West C; Jenmalm M; Engstrand L
• Article: GUT MICROBES. 2022;14(1):2013761

  Novel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe interactions

  Hiippala K; Khan I; Ronkainen A; Boulund F; Vaha-Makila H; Suutarinen M; Seifert M; Engstrand L; Satokari R
• Article: GUT PATHOGENS. 2022;14(1):47

  Effect of proton pump inhibitors in infants with esophageal atresia on the gut microbiome: a pilot cohort

  Brusselaers N; Pereira M; Alm J; Engstrand L; Engstrand Lilja H
• Article: NATURE COMMUNICATIONS. 2022;13(1):6842

  Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations

  Thorpe HA; Tourrette E; Yahara K; Vale FF; Liu S; Oleastro M; Alarcon T; Perets T-T; Latifi-Navid S; Yamaoka Y; Martinez-Gonzalez B; Karayiannis I; Karamitros T; Sgouras DN; Elamin W; Pascoe B; Sheppard SK; Ronkainen J; Aro P; Engstrand L; Agreus L; Suerbaum S; Thorell K; Falush D
• Article: BMJ OPEN. 2022;12(10):e065825

  Cohort profile: the Swedish Maternal Microbiome project (SweMaMi) - assessing the dynamic associations between the microbiome and maternal and neonatal adverse events

  Fransson E; Gudnadottir U; Hugerth LW; Itzel EW; Hamsten M; Boulund F; Pennhag A; Du J; Schuppe-Koistinen I; Brusselaers N; Engstrand L
• Conference publication: INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER. 2022;32:A31

  THE VAGINAL MICROBIOTA COMPOSITION IS ASSOCIATED WITH SEVERITY OF CERVICAL DYSPLASIA

  Norenhag J; Edfeldt G; Du J; Stalberg K; Garcia F; Hugerth LW; Engstrand L; Koistinen IS; Fransson E; Olovsson M
• Letter: LANCET DIABETES & ENDOCRINOLOGY. 2022;10(7):481-483

  Cross-sectional associations between the gut microbe Ruminococcus gnavus and features of the metabolic syndrome

  Grahnemo L; Nethander M; Coward E; Gabrielsen ME; Sree S; Billod J-M; Engstrand L; Abrahamsson S; Langhammer A; Hveem K; Ohlsson C
• Article: HUMAN REPRODUCTION. 2022;37(7):1525-1543

  The healthy female microbiome across body sites: effect of hormonal contraceptives and the menstrual cycle

  Krog MC; Hugerth LW; Fransson E; Bashir Z; Andersen AN; Edfeldt G; Engstrand L; Schuppe-Koistinen I; Nielsen HS
• Article: CURRENT MICROBIOLOGY. 2022;79(7):215

  A Pilot Study Investigating Faecal Microbiota After Two Dietary Interventions in Children with Juvenile Idiopathic Arthritis

  Berntson L; Oman A; Engstrand L; Dicksved J
• Article: LANCET GASTROENTEROLOGY & HEPATOLOGY. 2022;7(6):513-521

  Once-only colonoscopy or two rounds of faecal immunochemical testing 2 years apart for colorectal cancer screening (SCREESCO): preliminary report of a randomised controlled trial

  Forsberg A; Westerberg M; Metcalfe C; Steele R; Blom J; Engstrand L; Fritzell K; Hellstrom M; Levin L-A; Lowbeer C; Pischel A; Stromberg U; Tornberg S; Wengstrom Y; Ekbom A; Holmberg L; Hultcrantz R
• Article: CELL HOST & MICROBE. 2022;30(5):726-739.e3

  Dynamics of the normal gut microbiota: A longitudinal one-year population study in Sweden

  Olsson LM; Boulund F; Nilsson S; Khan MT; Gummesson A; Fagerberg L; Engstrand L; Perkins R; Uhlen M; Bergstrom G; Tremaroli V; Backhed F
• Article: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 2022;77(5):1461-1467

  Antibiotic use during pregnancy and the risk of preterm birth: a population-based Swedish cohort study

  Nguyen MH; Fornes R; Kamau N; Danielsson H; Callens S; Fransson E; Engstrand L; Bruyndonckx R; Brusselaers N
• Review: HUMAN REPRODUCTION OPEN. 2022;2022(2):hoac015

  The microbiome in reproductive health: protocol for a systems biology approach using a prospective, observational study design

  Krog MC; Madsen ME; Bliddal S; Bashir Z; Vexo LE; Hartwell D; Hugerth LW; Fransson E; Hamsten M; Boulund F; Wannerberger K; Engstrand L; Schuppe-Koistinen I; Nielsen HS
• Article: REPRODUCTIVE BIOLOGY AND ENDOCRINOLOGY. 2022;20(1):30

  Pregnancy, perinatal and childhood outcomes in women with and without polycystic ovary syndrome and metformin during pregnancy: a nationwide population-based study

  Fornes R; Simin J; Minh HN; Cruz G; Crisosto N; van der Schaaf M; Engstrand L; Brusselaers N
• Show more

All publications from group members

• Journal article: BIOLOGICAL PSYCHIATRY GLOBAL OPEN SCIENCE. 2025;5(3):100453

  Investigating the Microbiome in Relation to Mental Distress Across Two Points During Pregnancy: Data From U.S. and Swedish Cohorts

  Kimmel M; Tong B; Devall AE; Bjoervang RD; Schuppe-Koistinen I; Engstrand L; Fransson E; Skalkidou A; Hugerth LW
• Journal article: MICROBIAL BIOTECHNOLOGY. 2025;18(1):e70073

  Oral Immunisation With Non-GMO Surface Displayed SARS-CoV-2 Spike Epitopes on Bacteria-Like Particles Provokes Robust Humoral and Cellular Immune Responses, and Modulated the Gut Microbiome in Mice

  Vasquez R; Song JH; Mendoza RM; Hwang I-C; Bagon BB; Engstrand L; Valeriano VD; Kang D-K
• Article: AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY. 2025;93(1):e70040

  Vaginal Transcriptional Signatures of the Neutrophil-Driven Immune Response Correlate With Clinical Severity During Recurrent Vulvovaginal Candidiasis

  Hasselrot T; Alvendal C; Hunt S; Boger MF; Kaldhusdal V; Damdimopoulos A; Schuppe-Koistinen I; Edfeldt G; Bohm-Starke N; Broliden K
• Article: GUT MICROBES. 2024;16(1):2356275

  The protective role of commensal gut microbes and their metabolites against bacterial pathogens

  Cheng L; Correia MSP; Higdon SM; Garcia FR; Tsiara I; Joffre E; Sjoling A; Boulund F; Norin EL; Engstrand L; Globisch D; Du J
• Journal article: MICROORGANISMS. 2024;12(12):2655

  Microbial Dynamics: Assessing Skincare Regimens' Impact on the Facial Skin Microbiome and Skin Health Parameters

  Wagner N; Valeriano VD; Diou-Hirtz S; Bjorninen E; Akerstrom U; Engstrand L; Schuppe-Koistinen I; Gillbro JM
• Preprint: BIORXIV. 2024

  Antibiotics that Kill Gram-negative Bacteria by Restructuring the Outer Membrane Protein BamA

  Modaresi SM; Sugiyama R; Tram NDT; Jakob R; Phan C-S; Saei AA; Morishita Y; Mühlethaler T; Lim J; Ritz D; Long PSY; Lehner P; Lim ZH; Degen M; Yao Z; Maier T; Hou Y; Lee JY; Xu J; Yeat AYJ; Koh KTS; Goh WY; Ling S; Chua P; Yamazaki M; Ee PLR; Hiller S; Morinaka B
• Article: DRUG SAFETY. 2024;48(4):389-400

  Trends in Proton Pump Inhibitor Use in Sweden by Sex and Age: A Drug Utilisation Study

  Brusselaers N; Gudnadottir U; Engstrand L; Lilja HE
• Journal article: CANCER MEDICINE. 2024;13(23):e70440

  Exploring the Clinical Signatures of Cervical Dysplasia Patients and Their Association With Vaginal Microbiota

  Cheng L; Yan C; Yang Y; Hong F; Du J
• Journal article: NATURE COMMUNICATIONS. 2024;15(1):9638

  Small molecule modulation of protein corona for deep plasma proteome profiling

  Ashkarran AA; Gharibi H; Sadeghi SA; Modaresi SM; Wang Q; Lin T-J; Yerima G; Tamadon A; Sayadi M; Jafari M; Lin Z; Ritz D; Kakhniashvili D; Guha A; Mofrad MRK; Sun L; Landry MP; Saei AA; Mahmoudi M
• Journal article: EBIOMEDICINE. 2024;109:105400

  Association between seizure reduction during ketogenic diet treatment of epilepsy and changes in circulatory metabolites and gut microbiota composition

  Dahlin M; Wheelock CE; Prast-Nielsen S
• Article: HELICOBACTER. 2024;29(6):e70001

  Helicobacter pylori Eradication Therapy and the Risk of Colorectal Cancer: A Population-Based Nationwide Cohort Study in Sweden

  Liu Q; Sadr-Azodi O; Engstrand L; Fall K; Brusselaers N
• Article: BMJ OPEN. 2024;14(10):e082749

  Breast and endometrial safety of micronised progesterone versus norethisterone acetate in menopausal hormone therapy (PROBES): study protocol of a double-blind randomised controlled trial

  Lundell C; Stergiopoulos N; Blomberg L; Ujvari D; Schuppe-Koistinen I; Kopp-Kallner H; Iliadis SI; Skalkidou A; Hirschberg AL
• Journal article: FRONTIERS IN MICROBIOMES. 2024;3:1363089

  Vaginal dysbiosis and the potential of vaginal microbiome-directed therapeutics

  Valeriano VD; Lahtinen E; Hwang I-C; Zhang Y; Du J; Schuppe-Koistinen I
• Article: ADVANCED SCIENCE. 2024;11(38):2401502

  Multifaceted Proteome Analysis at Solubility, Redox, and Expression Dimensions for Target Identification

  Saei AA; Lundin A; Lyu H; Gharibi H; Luo H; Teppo J; Zhang X; Gaetani M; Vegvari A; Holmdahl R; Gygi SP; Zubarev RA
• Article: BIORXIV. 2024;:2024.03.06.582595

  Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small Molecules.

  Ashkarran AA; Gharibi H; Sadeghi SA; Modaresi SM; Wang Q; Lin T-J; Yerima G; Tamadon A; Sayadi M; Jafari M; Lin Z; Ritz D; Kakhniashvili D; Guha A; Mofrad MRK; Sun L; Landry MP; Saei AA; Mahmoudi M
• Article: ANALYTICAL CHEMISTRY. 2024;96(33):13533-13541

  Gel-Assisted Proteome Position Integral Shift Assay Returns Molecular Weight to Shotgun Proteomics and Identifies Caspase 3 Substrates

  Meng Z; Saei AA; Gharibi H; Zhang X; Lyu H; Lundstrom SL; Vegvari A; Gaetani M; Zubarev RA
• Journal article: MICROBIOME. 2024;12(1):153

  Defining Vaginal Community Dynamics: daily microbiome transitions, the role of menstruation, bacteriophages, and bacterial genes

  Hugerth LW; Krog MC; Vomstein K; Du J; Bashir Z; Kaldhusdal V; Fransson E; Engstrand L; Nielsen HS; Schuppe-Koistinen I
• Article: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2024;74(8)

  A hotspot of diversity: novel Shewanella species isolated from Baltic Sea sediments delineate a sympatric species complex

  Martin-Rodriguez AJ; Fernandez-Juarez V; Valeriano VD; Mihindukulasooriya I; Ceresnova L; Joffre E; Jensie-Markopoulos S; Moore ERB; Sjoeling A
• Journal article: NANO LETTERS. 2024;24(32):9874-9881

  Standardizing Protein Corona Characterization in Nanomedicine: A Multicenter Study to Enhance Reproducibility and Data Homogeneity

  Ashkarran AA; Gharibi H; Modaresi SM; Saei AA; Mahmoudi M
• Article: INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS. 2024;64(2):107221

  Bacteriophage-resistant carbapenem-resistant Klebsiella pneumoniae shows re duce d antibiotic resistance and virulence

  Chen Q; Zhang F; Bai J; Che Q; Xiang L; Zhang Z; Wang Y; Sjoling A; Martin-Rodriguez AJ; Zhu B; Fu L; Zhou Y
• Article: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2024;103(8):1596-1605

  Antibiotic or gastric acid inhibitor use during pregnancy and postpartum depression: Population-based cohort study

  Gudnadottir U; Kamau N; Fornes R; Nguyen MH; Callens S; Fransson E; Engstrand L; Bruyndonckx R; Brusselaers N
• Article: MSYSTEMS. 2024;9(7):e0026224-e00224

  Co-occurrence of ST412 Klebsiella pneumoniae isolates with hypermucoviscous and non-mucoviscous phenotypes in a short-term hospitalized patient

  Liang Q; Chen N; Wang W; Zhang B; Luo J; Zhong Y; Zhang F; Zhang Z; Martin-Rodriguez AJ; Wang Y; Xiang L; Xiong X; Hu R; Zhou Y
• Article: ACTA PAEDIATRICA. 2024;113(7):1672-1678

  School children's perceptions about being offered the HPV vaccination - A focus group study

  Enskar I; Fransson E; Enskar K; Neveus T; Grandahl M
• Article: NUCLEIC ACIDS RESEARCH. 2024;52(10):5572-5595

  Molecular insights into the fine-tuning of pH-dependent ArsR-mediated regulation of the SabA adhesin in Helicobacter pylori

  Aberg A; Gideonsson P; Bhat A; Ghosh P; Arnqvist A
• Editorial comment: NANOMEDICINE. 2024;19(14):1223-1226

  Multi-omics exploration of biomolecular corona in nanomedicine therapeutics and diagnostics

  Saei AA; Mahmoudi M
• Letter: GUT. 2024;73(7):1214-1215

  Clarithromycin-containing triple therapy for Helicobacter pylori eradication is inducing increased long-term resistant bacteria communities in the gut

  Sjomina O; Vangravs R; Leonova E; Polaka I; Pupola D; Civkulis K; Jeniceka A; Parsutins S; Stonans I; Park JY; Engstrand L; Leja M
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2024;59(6):674-682

  Plasma bile acids in association with Crohn's disease

  Kiasat A; Prast-Nielsen S; Rautiainen S; Engstrand L; Andersson F; Lindberg J; Schuppe-Koistinen I; Granstrom AL; Gustafsson UO
• Article: PSYCHONEUROENDOCRINOLOGY. 2024;164:107009

  Mid-pregnancy allopregnanolone levels and trajectories of perinatal depressive symptoms

  Bjorvang RD; Wallden Y; Fransson E; Comasco E; Sundstrom-Poromaa I; Skalkidou A
• Article: SCIENTIFIC REPORTS. 2024;14(1):11183

  Compositional and functional differences of the vaginal microbiota of women with and without cervical dysplasia

  Norenhag J; Edfeldt G; Stalberg K; Garcia F; Hugerth LW; Engstrand L; Fransson E; Du J; Schuppe-Koistinen I; Olovsson M
• Article: TRANSLATIONAL PSYCHIATRY. 2024;14(1):203

  Investigating heart rate variability measures during pregnancy as predictors of postpartum depression and anxiety: an exploratory study

  Eriksson A; Kimmel MC; Furmark T; Wikman A; Grueschow M; Skalkidou A; Frick A; Fransson E
• Article: BMC INFECTIOUS DISEASES. 2024;24(1):468

  Clostridioides difficile infection, recurrence and the associated healthcare consumption in Sweden between 2006 and 2019: a population-based cohort study

  Boven A; Simin J; Andersson FL; Vlieghe E; Callens S; Zeebari Z; Engstrand L; Brusselaers N
• Article: CHILD DEVELOPMENT. 2024;95(3):721-733

  Interactions of perinatal depression versus anxiety and infants' early temperament trajectories

  Soerensen F; Kimmel MC; Brenner V; Kraegeloh-Mann I; Skalkidou A; Mahjani B; Fransson E
• Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2024;35(5):902-911

  Adding Color to Mass Spectra of Biopolymers: Charge Determination Analysis (CHARDA) Assigns Charge State to Every Ion Peak

  Lyutvinskiy Y; Nagornov KO; Kozhinov AN; Gasilova N; Menin L; Meng Z; Zhang X; Saei AA; Fu T; Chamot-Rooke J; Tsybin YO; Makarov A; Zubarev RA
• Preprint: BIORXIV. 2024

  Profiling the intestinal microbiota, plasma bile acids and inflammation markers reveals novel associations in Crohn’s disease and Ulcerative colitis

  Prast-Nielsen S; Granström AL; Kiasat A; Ahlström G; Edfeldt G; Rautiainen S; Boulund F; Andersson FO; Lindberg J; Schuppe-Koistinen I; Gustafsson UO; Engstrand L
• Article: MOLECULAR MICROBIOLOGY. 2024;121(4):696-716

  Diverse mechanisms control amino acid-dependent environmental alkalization by Candida albicans

  Silao FGS; Valeriano VD; Uddstrom E; Falconer E; Ljungdahl PO
• Article: INFECTION. 2024;52(2):649-660

  Clostridioides difficile recurrence in individuals with and without cancer: a Swedish population-based cohort study

  Mpakaniye P; Boven A; Callens S; Engstrand L; Vlieghe E; Brusselaers N
• Article: ACS PHARMACOLOGY AND TRANSLATIONAL SCIENCE. 2024;7(3):787-796

  Chemical Proteomics Reveals that the Anticancer Drug Everolimus Affects the Ubiquitin-Proteasome System

  Lobas AA; Saei AA; Lyu H; Zubarev RA; Gorshkov MV
• Article: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 2024;79(3):608-616

  The combined effect of systemic antibiotics and proton pump inhibitors on Clostridioides difficile infection and recurrence

  Moreels N; Boven A; Gressani O; Andersson FL; Vlieghe E; Callens S; Engstrand L; Simin J; Brusselaers N
• Letter: LANCET REGIONAL HEALTH-EUROPE. 2024;38:100872

  Prevalence of SARS-CoV-2 infections among Swedish healthcare workers on duty in December 2023

  Aguilera K; Bladh O; Marking U; Norin NG; Rihani A; Ujvari D; Ning FC; Klingstroem J; Havervall S; Aberg M; Blom K; Alm JJ; Thalin C
• Article: BRAIN BEHAVIOR AND IMMUNITY. 2024;117:298-309

  Differences in the gut microbiome of young adults with schizophrenia spectrum disorder: using machine learning to distinguish cases from controls

  Stiernborg M; Prast-Nielsen S; Melas PA; Skott M; Millischer V; Boulund F; Forsell Y; Lavebratt C
• Article: EUROPEAN PSYCHIATRY. 2024;67(1):e14

  Feeling better? - Identification, interventions, and remission among women with early postpartum depressive symptoms in Sweden: a nested cohort study

  Giden K; Vinnerljung L; Iliadis SI; Fransson E; Skalkidou A
• Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2024;63(3):e202316488

  Ultralight Ultrafast Enzymes

  Zhang X; Meng Z; Beusch CM; Gharibi H; Cheng Q; Lyu H; Di Stefano L; Wang J; Saei AA; Vegvari A; Gaetani M; Zubarev RA
• Article: CELL HOST & MICROBE. 2024;32(1):106-116.e6

  Precision microbial intervention improves social behavior but not autism severity: A pilot double-blind randomized placebo-controlled trial

  Mazzone L; Dooling SW; Volpe E; Uljarevic M; Waters JL; Sabatini A; Arturi L; Abate R; Riccioni A; Siracusano M; Pereira M; Engstrand L; Cristofori F; Adduce D; Francavilla R; Costa-Mattioli M; Hardan AY
• Article: NATURE COMMUNICATIONS. 2024;15(1):342

  A uniform data processing pipeline enables harmonized nanoparticle protein corona analysis across proteomics core facilities

  Gharibi H; Ashkarran AA; Jafari M; Voke E; Landry MP; Saei AA; Mahmoudi M
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2024;14:1287557

  Small RNA-modulated anaerobic respiration allows bacteria to survive under antibiotic stress conditions

  Kim D; Bhat A; Kim S-K; Lee S; Ryu C-M
• Article: PSYCHOSOMATIC MEDICINE. 2024;86(1):52-58

  Association of Diabetes Mellitus in Pregnancy and Perinatal Depression

  Bjorvang RD; Liakea I; Carpentsier B; Kozinszky Z; Skalkidou A; Fransson E
• Article: PLOS ONE. 2024;19(5):e0280612

  Inflammatory biomarkers and perinatal depression: A systematic review.

  Silva-Fernandes A; Conde A; Marques M; Caparros-Gonzalez RA; Fransson E; Mesquita AR; Figueiredo B; Skalkidou A
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2024;14:1324794

  Investigations of microbiota composition and neuroactive pathways in association with symptoms of stress and depression in a cohort of healthy women

  Bashir Z; Hugerth LW; Krog MC; Prast-Nielsen S; Edfeldt G; Boulund F; Schacht SR; Tetens I; Engstrand L; Schuppe-Koistinen I; Fransson E; Nielsen HS
• Editorial comment: CELL REPORTS. 2023;42(12):113570

  Preview Fecal transfers from children on the ketogenic diet mimic the anti-seizure effect in mice

  Prast-Nielsen S
• Article: JOURNAL OF REPRODUCTIVE IMMUNOLOGY. 2023;160:104155

  Impaired decidualization and relative increase of PROK1 expression in the decidua of patients with unexplained recurrent pregnancy loss showing insulin resistance

  Goto S; Ozaki Y; Ozawa F; Yoshihara H; Ujvari D; Kitaori T; Sugiura-Ogasawara M
• Article: BMJ OPEN. 2023;13(11):e073619

  Maternal serum levels of prokineticin-1 related to pregnancy complications and metformin use in women with polycystic ovary syndrome: a post hoc analysis of two prospective, randomised, placebo-controlled trials

  Ujvari D; Trouva A; Hirschberg AL; Vanky E
• Article: ENDOCRINOLOGY. 2023;165(1):bqad174

  DHT and Insulin Upregulate Secretion of the Soluble Decoy Receptor of IL-33 From Decidualized Endometrial Stromal Cells

  Salamon D; Ujvari D; Hellberg A; Hirschberg AL
• Article: BMJ OPEN. 2023;13(11):e072839

  Cohort profile: the U-BIRTH study on peripartum depression and child development in Sweden

  Tu H-F; Fransson E; Kallak TK; Elofsson U; Ramklint M; Skalkidou A
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2023;58(11):1246-1252

  Evaluation of plasma Short chain fatty acid levels as markers for Inflammatory bowel disease

  Kiasat A; Rautiainen S; Prast-Nielsen S; Engstrand L; Schuppe-Koistinen I; Gustafsson UOO; Granstrom AL
• Letter: CLINICAL AND EXPERIMENTAL ALLERGY. 2023;53(11):1212-1215

  The gut microbiome and asthma in a Swedish twin study

  Mubanga M; Ploner A; Schuppe-Koistinen I; Magnusson PKE; Boulund F; Debelius JW; Almqvist C
• Article: CLINICAL MICROBIOLOGY AND INFECTION. 2023;29(11):1424-1430

  Clostridioides difficile infection-associated cause-specific and all-cause mortality: a population-based cohort study

  Boven A; Vlieghe E; Engstrand L; Andersson FL; Callens S; Simin J; Brusselaers N
• Article: MSYSTEMS. 2023;8(5):e0014123-e00123

  Circulation of enterotoxigenic Escherichia coli (ETEC) isolates expressing CS23 from the environment to clinical settings

  Toledo CC; von Mentzer A; Agramont J; Thorell K; Zhou Y; Szabo M; Colque P; Kuhn I; Gutierrez-Cortez S; Joffre E
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2023;58(10):1131-1138

  Diverticulosis is not associated with altered gut microbiota nor is it predictive of future diverticulitis: a population-based colonoscopy study

  Alexandersson BT; Hugerth LW; Hedin C; Forsberg A; Talley NJ; Agreus L; Jarbrink-Sehgal E; Engstrand L; Andreasson A; Schmidt PT
• Review: JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION. 2023;56(5):893-908

  Beyond faecal microbiota transplantation, the non-negligible role of faecal virome or bacteriophage transplantation

  Wu D; Zhang C; Liu Y; Yao J; Yang X; Wu S; Du J; Yang X
• Article: LIVER INTERNATIONAL. 2023;43(10):2186-2197

  Antibiotic use and development of nonalcoholic fatty liver disease: A population-based case-control study

  Ebrahimi F; Simon TG; Hagstrom H; Sun J; Bergman D; Forss A; Roelstraete B; Engstrand L; Ludvigsson JF
• Article: SCIENCE IMMUNOLOGY. 2023;8(87):eadf7702

  Laboratory mice with a wild microbiota generate strong allergic immune responses

  Ma J; Urgard E; Runge S; Classon CH; Mathae L; Stark JM; Cheng L; Alvarez JA; Von Zedtwitz S; Baleviciute A; Hoyer SM; Li M; Gernand AM; Osbelt L; Bielecka AA; Lesker TR; Huang H-J; Vrtala S; Boon L; Beyaert R; Adner M; Gonzalez IM; Strowig T; Du J; Nylen S; Rosshart SP; Coquet JM
• Article: CANCERS. 2023;15(19):4764

  Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma

  Kotol D; Woessmann J; Hober A; Alvez MB; Minh KHT; Ponten F; Fagerberg L; Uhlen M; Edfors F
• Article: MOLECULES. 2023;28(19):6768

  Massive Solubility Changes in Neuronal Proteins upon Simulated Traumatic Brain Injury Reveal the Role of Shockwaves in Irreversible Damage

  Saei AA; Gharibi H; Lyu H; Nilsson B; Jafari M; Von Holst H; Zubarev RA
• Preprint: BIORXIV. 2023

  Multifaceted proteome analysis at solubility, redox, and expression dimensions for target identification

  Saei AA; Lundin A; Lyu H; Gharibi H; Luo H; Teppo J; Zhang X; Gaetani M; Végvári Á; Holmdahl R; Gygi S; Zubarev R
• Journal article: BJC REPORTS. 2023;1(1):11

  Prevalence of the human papillomavirus (HPV) types among cervical dysplasia women attending a gynaecological clinic in Sweden.

  García FR; Norenhag J; Edfeldt G; Cheng L; Hugerth LW; Pennhag AAL; Schuppe-Koistinen I; Engstrand L; Olovsson M; Du J
• Article: MICROBIOLOGY SPECTRUM. 2023;11(4):e0448622-e04422

  Escherichia coli ST2797 Is Abundant in Wastewater and Might Be a Novel Emerging Extended-Spectrum Beta-Lactamase E. coli

  Paulshus E; Colque P; Kuhn I; Tauhid T; Hu YOO; Zhou Y; Thorell K; Mollby R; Sorum H; Sjoling A; Joffre E
• Preprint: BIORXIV. 2023

  Diverse mechanisms control amino acid-dependent environmental alkalization by Candida albicans

  Silao FGS; Valeriano VD; Uddström E; Falconer E; Ljungdahl PO
• Editorial comment: IMETA. 2023;2(3):e108

  The salivary microbiota is altered in cervical dysplasia patients and influenced by conization

  Wu S; Cheng L; Pennhag AAL; Seifert M; Guonadottir U; Engstrand L; Mints M; Andersson S; Du J
• Journal article: MOLECULAR ORAL MICROBIOLOGY. 2023;38(4):334-346

  Accessory fimbrial subunits and PPAD are necessary for TLR2 activation by Porphyromonas gingivalis.

  Wielento A; Bereta GP; Szczęśniak K; Jacuła A; Terekhova M; Artyomov MN; Hasegawa Y; Grabiec AM; Potempa J
• Journal article: HUMAN REPRODUCTION. 2023;38(Supplement_1)

  P-697 Pre-pregnancy complications - associated factors and wellbeing in early pregnancy: A Swedish cohort study

  Gudnadottir U; Du J; Hugerth LW; Engstrand L; Schuppe-Koistinen I; Wiberg Itzel E; Fransson E; Brusselaers N
• Journal article: HUMAN REPRODUCTION. 2023;38(Supplement_1)

  O-262 The vaginal and faecal microbiome in women with recurrent pregnancy loss (RPL) before pregnancy according to the reproductive outcome after referral

  Krog MC; Peker N; Hugerth LW; Vomstein K; Bliddal S; Reinhardt Nielsen J; Slot A; Vauvert Hviid K; Engstrand L; Schuppe-Koistinen I; Nielsen HS
• Article: MICROBIOLOGY SPECTRUM. 2023;11(3):e0506622-e05022

  The Local Tumor Microbiome Is Associated with Survival in Late-Stage Colorectal Cancer Patients

  Debelius JW; Engstrand L; Matussek A; Brusselaers N; Morton JT; Stenmarker M; Olsen RS
• Preprint: RESEARCH SQUARE. 2023

  Defining Vaginal Community Dynamics: daily microbiome transitions, the role of menstruation, bacteriophages and bacterial genes

  Hugerth LW; Krog MC; Vomstein K; Du J; Bashir Z; Kaldhusdal V; Fransson E; Engstrand L; Nielsen HS; Schuppe-Koistinen I
• Preprint: BIORXIV. 2023

  Defining Vaginal Community Dynamics: daily microbiome transitions, the role of menstruation, bacteriophages and bacterial genes

  Hugerth L; Krog MC; Vomstein K; Du J; Bashir Z; Kaldhusdal V; Fransson E; Engstrand L; Nielsen HS; Schuppe-Koistinen I
• Article: NATURE MICROBIOLOGY. 2023;8(6):1123-1136

  Atlas of mRNA translation and decay for bacteria

  Huch S; Nersisyan L; Ropat M; Barrett D; Wu M; Wang J; Valeriano VD; Vardazaryan N; Huerta-Cepas J; Wei W; Du J; Steinmetz LM; Engstrand L; Pelechano V
• Meeting abstract: ANNALS OF ONCOLOGY. 2023;34:S8

  Maintenance proton pump inhibitor usage and risk of colorectal cancer: A population-based Swedish cohort study

  Liu Q; Wang X; Engstrand L; Sadr-Azodi O; Fall K; Brusselaers N
• Preprint: BIORXIV. 2023;BIORXIV

  Helicobacter pylori attachment-blocking antibodies protect against duodenal ulcer disease.

  Bugaytsova JA; Moonens K; Piddubnyi A; Schmidt A; Edlund JO; Lisiutin G; Brännström K; Chernov YA; Thorel K; Tkachenko I; Sharova O; Vikhrova I; Butsyk A; Shubin P; Chyzhma R; Johansson DX; Marcotte H; Sjöström R; Shevtsova A; Bylund G; Rakhimova L; Lundquist A; Berhilevych O; Kasianchuk V; Loboda A; Ivanytsia V; Hultenby K; Persson MAA; Gomes J; Matos R; Gartner F; Reis CA; Whitmire JM; Merrell DS; Pan-Hammarström Q; Landström M; Oscarson S; D'Elios MM; Agreus L; Ronkainen J; Aro P; Engstrand L; Graham DY; Kachkovska V; Mukhopadhyay A; Chaudhuri S; Karmakar BC; Paul S; Kravets O; Camorlinga M; Torres J; Berg DE; Moskalenko R; Haas R; Remaut H; Hammarström L; Borén T
• Preprint: RESEARCH SQUARE. 2023

  Prevalence of the human papillomavirus (HPV) types among cervical dysplasia women in Sweden

  García FR; Norenhag J; Edfeldt G; Cheng L; Hugerth LW; Pennhag AAL; Schuppe-Koistinen I; Engstrand L; Olovsson M; Du J
• Article: CHEMICAL COMMUNICATIONS. 2023;59(39):5843-5846

  Sensitive quantification of short-chain fatty acids combined with global metabolomics in microbiome cultures

  Lin W; Garcia FR; Norin EL; Kart D; Engstrand L; Du J; Globisch D
• Article: MICROBIAL CELL FACTORIES. 2023;22(1):96

  Mucosal immunization with lactiplantibacillus plantarum-displaying recombinant SARS-CoV-2 epitopes on the surface induces humoral and mucosal immune responses in mice

  Hwang I-C; Valeriano VD; Song JH; Pereira M; Oh JK; Han K; Engstrand L; Kang D-K
• Article: BRAIN BEHAVIOR AND IMMUNITY. 2023;110:310-321

  Bacterial gut microbiome differences in adults with ADHD and in children with ADHD on psychostimulant medication

  Stiernborg M; Debelius JW; Yang LL; Skott E; Millischer V; Giacobini M; Melas PA; Boulund F; Lavebratt C
• Article: DRUG SAFETY. 2023;46(5):467-478

  Maternal and Early-Life Exposure to Antibiotics and the Risk of Autism and Attention-Deficit Hyperactivity Disorder in Childhood: a Swedish Population-Based Cohort Study

  Njotto LL; Simin J; Fornes R; Odsbu I; Mussche I; Callens S; Engstrand L; Bruyndonckx R; Brusselaers N
• Review: IMETA. 2023;2(2):e88

  An overview of host-derived molecules that interact with gut microbiota

  Zhang C; Liu H; Sun L; Wang Y; Chen X; Du J; Sjoling A; Yao J; Wu S
• Journal article: JOURNAL OF DENTAL RESEARCH. 2023;102(5):489-496

  The Role of Gingival Fibroblasts in the Pathogenesis of Periodontitis.

  Wielento A; Lagosz-Cwik KB; Potempa J; Grabiec AM
• Article: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2023;73(4)

  Shewanella septentrionalis sp. nov. and Shewanella holmiensis sp. nov., isolated from Baltic Sea water and sediments

  Martin-Rodriguez AJ; Thorell K; Joffre E; Jensie-Markopoulos S; Moore ERB; Sjoeling A
• Article: NATURE COMMUNICATIONS. 2023;14(1):2250

  Identification of three bacterial species associated with increased appendicular lean mass: the HUNT study

  Grahnemo L; Nethander M; Coward E; Gabrielsen ME; Sree S; Billod J-M; Sjogren K; Engstrand L; Dekkers KF; Fall T; Langhammer A; Hveem K; Ohlsson C
• Article: BMC PREGNANCY AND CHILDBIRTH. 2023;23(1):237

  Autonomic function and inflammation in pregnant women participating in a randomized controlled study of Mindfulness Based Childbirth and Parenting

  Radmark L; Osika W; Wallen MB; Nissen E; Lonnberg G; Branstrom R; Henje E; Gardner R; Fransson E; Karlsson H; Niemi M
• Article: JCI INSIGHT. 2023;8(7):e164875

  NCF1-dependent production of ROS protects against lupus by regulating plasmacytoid dendritic cell development and functions

  Luo H; Urbonaviciute V; Saei AA; Lyu H; Gaetani M; Vegvari A; Li Y; Zubarev RA; Holmdahl R
• Article: JOURNAL OF CROHNS & COLITIS. 2023;17(3):418-432

  Mucosal and Plasma Metabolomes in New-onset Paediatric Inflammatory Bowel Disease: Correlations with Disease Characteristics and Plasma Inflammation Protein Markers

  Nystrom N; Prast-Nielsen S; Correia M; Globisch D; Engstrand L; Schuppe-Koistinen I; Halfvarsond J
• Article: MICROBIOME. 2023;11(1):67

  Distinct cervical tissue-adherent and luminal microbiome communities correlate with mucosal host gene expression and protein levels in Kenyan sex workers

  Edfeldt G; Kaldhusdal V; Czarnewski P; Bradley F; Bergstrom S; Lajoie J; Xu J; Manberg A; Kimani J; Oyugi J; Nilsson P; Tjernlund A; Fowke KR; Kwon DS; Broliden K
• Corrigendum: NATURE COMMUNICATIONS. 2023;14(1):1539

  Author Correction: Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations.

  Thorpe HA; Tourrette E; Yahara K; Vale FF; Liu S; Oleastro M; Alarcon T; Perets T-T; Latifi-Navid S; Yamaoka Y; Martinez-Gonzalez B; Karayiannis I; Karamitros T; Sgouras DN; Elamin W; Pascoe B; Sheppard SK; Ronkainen J; Aro P; Engstrand L; Agreus L; Suerbaum S; Thorell K; Falush D
• Preprint: BIORXIV. 2023

  Circulation of enterotoxigenic Escherichia coli (ETEC) isolates expressing CS23 from the environment to clinical settings

  Toledo CC; von Mentzer A; Agramont J; Thorell K; Zhou Y; Szabó M; Colque P; Kuhn I; Gutiérrez-Cortez S; Joffré E
• Article: BMC PREGNANCY AND CHILDBIRTH. 2023;23(1):153

  Pre-pregnancy complications-associated factors and wellbeing in early pregnancy: a Swedish cohort study

  Gudnadottir U; Du J; Hugerth LWW; Engstrand L; Schuppe-Koistinen I; Itzel EW; Fransson E; Brusselaers N
• Article: JOURNAL OF MEDICINAL FOOD. 2023;26(3):185-192

  Effects of Consuming Fermented Fish (Surstromming) on the Fecal Microflora in Healthy Individuals

  Kallner A; Debelius J; Schuppe-Koistinen I; Pereira M; Engstrand L
• Article: JCI INSIGHT. 2023;8(4):e161042

  Metagenomic and single-cell RNA-Seq survey of the Helicobacter pylori-infected stomach in asymptomatic individuals

  Sorini C; Tripathi KP; Wu S; Higdon SM; Wang J; Cheng L; Banerjee S; Reinhardt A; Kreslavsky T; Thorell A; Engstrand L; Du J; Villablanca EJ
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2023;24(4):4123

  Effects of Estradiol/Micronized Progesterone vs. Conjugated Equine Estrogens/Medroxyprogesterone Acetate on Breast Cancer Gene Expression in Healthy Postmenopausal Women

  Lalitkumar PGL; Lundstrom E; Bystrom B; Ujvari D; Murkes D; Tani E; Soderqvist G
• Article: ACS BIO & MED CHEM AU. 2023;3(1):62-73

  Sex-Specific Silica Nanoparticle Protein Corona Compositions Exposed to Male and Female BALB/c Mice Plasmas

  Ashkarran AA; Gharibi H; Grunberger JW; Saei AA; Khurana N; Mohammadpour R; Ghandehari H; Mahmoudi M
• Article: MICROBIOLOGY SPECTRUM. 2023;11(1):e0344822-e03422

  Oral Microbiota Alteration and Roles in Epstein-Barr Virus Reactivation in Nasopharyngeal Carcinoma

  Liao Y; Zhang J-B; Lu L-X; Jia Y-J; Zheng M-Q; Debelius JW; He Y-Q; Wang T-M; Deng C-M; Tong X-T; Xue W-Q; Cao L-J; Wu Z-Y; Yang D-W; Zheng X-H; Li X-Z; Wu Y-X; Feng L; Ye W; Mu J; Jia W-H
• Review: TRENDS IN MICROBIOLOGY. 2023;31(2):120-134

  Respiration-induced biofilm formation as a driver for bacterial niche colonization

  Martin-Rodriguez AJ
• Article: BIOSENSORS & BIOELECTRONICS. 2023;220:114862

  Multi-omics analysis of magnetically levitated plasma biomolecules

  Ashkarran AA; Gharibi H; Abou Zeki D; Radu I; Khalighinejad F; Keyhanian K; Abrahamsson CK; Ionete C; Saei AA; Mahmoudi M
• Article: COMMUNICATIONS BIOLOGY. 2023;6(1):20

  High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice

  Hases L; Stepanauskaite L; Birgersson M; Brusselaers N; Schuppe-Koistinen I; Archer A; Engstrand L; Williams C
• Editorial comment: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2023;13:1169998

  Editorial: Rising stars in biofilms 2022

  Armbruster CE; Franca A; Kushugulova A; Mauch RM; Martin-Rodriguez AJ
• Article: JOURNAL OF PARENTERAL AND ENTERAL NUTRITION. 2023;47(1):77-86

  Impact of exclusive enteral nutrition on the gut microbiome of children with medical complexity

  Beauchamp-Walters J; Aleti G; Herrera L; Debelius J; Lima N; Dalal P; Hong S; Knight R; Rhee KE
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2023;13:1130333

  Coexistence of tmexCD3-toprJ1b tigecycline resistance genes with two novel bla_VIM-2-carrying and bla_OXA-10-carrying transposons in a Pseudomononas asiatica plasmid

  Li Q; Chen Q; Liang S; Wang W; Zhang B; Martin-Rodriguez AJ; Liang Q; Zhang F; Guo L; Xiong X; Hu R; Xiang L; Zhou Y
• Article: RESEARCH. 2023;6:0058

  A 3D Bioprinted Gut Anaerobic Model for Studying Bacteria-Host Interactions

  Cheng L; Liu T; Liu Q; Lian L; Tang G; Mille LS; Garcia FR; Engstrand L; Zhang YS; Du J
• Conference publication: HUMAN REPRODUCTION. 2023;38

  The vaginal and faecal microbiome in women with recurrent pregnancy loss (RPL) before pregnancy according to the reproductive outcome after referral

  Krog MC; Peker N; Hugerth LW; Vomstein K; Bliddal S; Nielsen JR; Slot A; Hviid KV; Engstrand L; Schuppe-Koistinen I; Nielsen HS
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2023;13:1242681

  Alterations in the gut microbiome and its metabolites are associated with the immune response to mucosal immunization with Lactiplantibacillus plantarum-displaying recombinant SARS-CoV-2 spike epitopes in mice

  Hwang I-C; Vasquez R; Song JH; Engstrand L; Valeriano VD; Kang D-K
• Conference publication: PHARMACOEPIDEMIOLOGY AND DRUG SAFETY. 2023;32:77-78

  Maintenance proton pump inhibitor usage and risk of colorectal cancer: A population-based Swedish cohort study

  Liu Q; Wang X; Engstrand L; Sadr-Azodi O; Fall K; Brusselaers N
• Book chapter: TRENDING TOPICS IN ESCHERICHIA COLI RESEARCH. 2023;p. 33-53

  Recent Progress on Enterotoxigenic E. coli (ETEC) and Antibiotic Resistance in Pathogenic E. coli

  Joffré E; Zurita J; Calderon Toledo C; Gutiérrez-Cortez S
• Conference publication: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2023;102:90

  Restoration of microbiota in newborns (ROMANS) -a randomized placebo-controlled multicenter allergy prevention study

  Fransson E; Hamsten M; Jonsson M; West C; Jenmalm M; Engstrand L
• Conference publication: JOURNAL OF PSYCHOSOMATIC OBSTETRICS & GYNECOLOGY. 2023;44

  Association of diabetes in pregnancy with perinatal depression

  Bjorvang R; Liakea I; Carpentsier B; Kozinszky Z; Skalkidou A; Fransson E
• Conference publication: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2023;102:64

  Pre-pregnancy complications -associated factors and wellbeing in early pregnancy. A Swedish cohort study

  Gudnadottir U; Du J; Hugerth LW; Engstrand L; Schuppe-Koistinen I; Itzel EW; Fransson E; Brusselaers N
• Review: CAMBRIDGE PRISMS: PRECISION MEDICINE. 2023;1:e15

  Building a precision medicine infrastructure at a national level: The Swedish experience.

  Edsjö A; Lindstrand A; Gisselsson D; Mölling P; Friedman M; Cavelier L; Johansson M; Ehrencrona H; Fagerqvist T; Strid T; Lovmar L; Jacobsson B; Johansson Å; Engstrand L; Wheelock CE; Sikora P; Wirta V; Fioretos T; Rosenquist R; Genomic Medicine Sweden (GMS)
• Article: PLOS ONE. 2023;18(9):e0292132

  Safety and tolerability of frozen, capsulized autologous faecal microbiota transplantation. A randomized double blinded phase I clinical trial

  Stefansson M; Bladh O; Flink O; Skolling O; Ekre H-P; Rombo L; Engstrand L; Ursing J
• Conference publication: HUMAN REPRODUCTION. 2023;38

  Pre-pregnancy complications - associated factors and wellbeing in early pregnancy: A Swedish cohort study

  Gudnadottir U; Du J; Hugerth LW; Engstrand L; Schuppe-Koistinen I; Itzel EW; Fransson E; Brusselaers N
• Article: GUT MICROBES. 2022;14(1):2013761

  Novel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe interactions

  Hiippala K; Khan I; Ronkainen A; Boulund F; Vaha-Makila H; Suutarinen M; Seifert M; Engstrand L; Satokari R
• Article: ONCOIMMUNOLOGY. 2022;11(1):2109861

  IFNγ directly counteracts imatinib-induced apoptosis of primary human CD34+CML stem/progenitor cells potentially through the upregulation of multiple key survival factors

  Ujvari D; Malyukova A; Zovko A; Yektaei-Karin E; Madapura HS; Keszei M; Nagy N; Lotfi K; Bjorn N; Wallvik J; Stenke L; Salamon D
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022;24(1):193

  Matched Analyses of Brain Metastases versus Primary Non-Small Cell Lung Cancer Reveal a Unique microRNA Signature

  Tsakonas G; Koulouris A; Kazmierczak D; Botling J; Ortiz-Villalon C; Nord H; Lindskog M; Sandelin M; Micke P; Hydbring P; Ekman S
• Article: BMC MEDICINE. 2022;20(1):492

  Population-based cohort study: proton pump inhibitor use during pregnancy in Sweden and the risk of maternal and neonatal adverse events

  Breddels EM; Simin J; Fornes R; Engstrand HL; Engstrand L; Bruyndonckx R; Brusselaers N
• Article: GUT PATHOGENS. 2022;14(1):47

  Effect of proton pump inhibitors in infants with esophageal atresia on the gut microbiome: a pilot cohort

  Brusselaers N; Pereira M; Alm J; Engstrand L; Engstrand Lilja H
• Letter: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2022;206(12):1564-1567

  Metatranscriptomics of Nasopharyngeal Microbiota and Host Distinguish between Pneumonia and Health

  Nannapaneni P; Sundh J; Prast-Nielsen S; Rhedin S; Ortqvist A; Naucler P; Henriques-Normark B
• Article: SCIENTIFIC REPORTS. 2022;12(1):21253

  Differentiated mental health patterns in pregnancy during COVID-19 first two waves in Sweden: a mixed methods study using digital phenotyping

  Fransson E; Karalexi M; Kimmel M; Brann E; Kollia N; Tas A; van Zoest V; Nordling E; Skalkidou A; Papadopoulos FC
• Article: ARCHIVES OF WOMENS MENTAL HEALTH. 2022;25(6):1087-1095

  Alcohol consumption habits and associations with anxiety or depressive symptoms postpartum in women with high socioeconomic status in Sweden

  Lager S; Giden K; Axfors C; Sigvardsson F; Kollia N; Nylander I; Fransson E; Skalkidou A
• Article: NATURE COMMUNICATIONS. 2022;13(1):6842

  Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations

  Thorpe HA; Tourrette E; Yahara K; Vale FF; Liu S; Oleastro M; Alarcon T; Perets T-T; Latifi-Navid S; Yamaoka Y; Martinez-Gonzalez B; Karayiannis I; Karamitros T; Sgouras DN; Elamin W; Pascoe B; Sheppard SK; Ronkainen J; Aro P; Engstrand L; Agreus L; Suerbaum S; Thorell K; Falush D
• Preprint: BIORXIV. 2022

  Monitoring Functional Post-Translational Modifications Using a Data-Driven Proteome Informatic Pipeline

  Nickchi P; Vadadokhau U; Mirzaie M; Baumann M; Saei A; Jafari M
• Article: NATURE COMMUNICATIONS. 2022;13(1):6610

  Measurements of heterogeneity in proteomics analysis of the nanoparticle protein corona across core facilities

  Ashkarran AA; Gharibi H; Voke E; Landry MP; Saei AA; Mahmoudi M
• Article: CANCER MEDICINE. 2022;11(22):4341-4353

  Psychotropic medication use in parents of survivors of adolescent cancer: A register-based cohort study

  Wikman A; Hoven E; Alvariza A; Lovgren M; Kreicbergs U; Skoglund C; Fransson E; Ljungman G; Ljung R; Ljungman L
• Article: ANALYTICAL CHEMISTRY. 2022;94(43):15048-15056

  Proteomics-Compatible Fourier Transform Isotopic Ratio Mass Spectrometry of Polypeptides

  Gharibi H; Chernobrovkin AL; Saei AA; Zhang X; Gaetani M; Makarov AA; Zubarev RA
• Article: BMJ OPEN. 2022;12(10):e065825

  Cohort profile: the Swedish Maternal Microbiome project (SweMaMi) - assessing the dynamic associations between the microbiome and maternal and neonatal adverse events

  Fransson E; Gudnadottir U; Hugerth LW; Itzel EW; Hamsten M; Boulund F; Pennhag A; Du J; Schuppe-Koistinen I; Brusselaers N; Engstrand L
• Article: JOURNAL OF INFECTIOUS DISEASES. 2022;226(8):1428-1440

  Preserved Mucosal-Associated Invariant T Cells in the Cervical Mucosa of HIV-Infected Women with Dominant Expression of the TRAV1-2-TRAJ20 T Cell Receptor α-Chain

  Gibbs A; Healy K; Kaldhusdal V; Sundling C; Franzen-Boger M; Edfeldt G; Buggert M; Lajoie J; Fowke KR; Kimani J; Kwon DS; Andersson S; Sandberg JK; Broliden K; Davanian H; Chen MS; Tjernlund A
• Review: CRITICAL REVIEWS IN ANALYTICAL CHEMISTRY. 2022;52(7):1461-1487

  Breathomics: Review of Sample Collection and Analysis, Data Modeling and Clinical Applications

  Khoubnasabjafari M; Mogaddam MRA; Rahimpour E; Soleymani J; Saei AA; Jouyban A
• Article: NEW PHYTOLOGIST. 2022;236(2):671-683

  Elevation and plant species identity jointly shape a diverse arbuscular mycorrhizal fungal community in the High Arctic

  Rasmussen PU; Abrego N; Roslin T; Opik M; Sepp S-K; Blanchet FG; Huotari T; Hugerth LW; Tack AJM
• Letter: NATURE MEDICINE. 2022;28(10):1980-1982

  Implementing precision medicine in a regionally organized healthcare system in Sweden

  Fioretos T; Wirta V; Cavelier L; Berglund E; Friedman M; Akhras M; Botling J; Ehrencrona H; Engstrand L; Helenius G; Fagerqvist T; Gisselsson D; Gruvberger-Saal S; Gyllensten U; Heidenblad M; Hoglund K; Jacobsson B; Johansson M; Johansson A; Soller MJ; Landstrom M; Larsson P; Levin L-A; Lindstrand A; Lovmar L; Lyander A; Melin M; Nordgren A; Nordmark G; Molling P; Palmqvist L; Palmqvist R; Repsilber D; Sikora P; Stenmark B; Soderkvist P; Stranneheim H; Strid T; Wheelock CE; Wadelius M; Wedell A; Edsjo A; Rosenquist R
• Conference publication: INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER. 2022;32:A31

  THE VAGINAL MICROBIOTA COMPOSITION IS ASSOCIATED WITH SEVERITY OF CERVICAL DYSPLASIA

  Norenhag J; Edfeldt G; Du J; Stalberg K; Garcia F; Hugerth LW; Engstrand L; Koistinen IS; Fransson E; Olovsson M
• Preprint: MEDRXIV. 2022

  The local tumor microbiome is associated with survival in late-stage colorectal cancer patients

  Debelius J; Engstrand L; Matussek A; Brusselaers N; Morton J; Stenmarker M; Olsen R
• Article: SEMINARS IN CANCER BIOLOGY. 2022;84:242-254

  Trailblazing precision medicine in Europe: A joint view by Genomic Medicine Sweden and the Centers for Personalized Medicine, ZPM, in Germany

  Stenzinger A; Edsjoe A; Ploeger C; Friedman M; Frohling S; Wirta V; Seufferlein T; Botling J; Duyster J; Akhras M; Thimme R; Fioretos T; Bitzer M; Cavelier L; Schirmacher P; Malek N; Rosenquist R
• Article: MICROBIOLOGY SPECTRUM. 2022;10(4):e0175521-e01721

  Analysis of Growth Phases of Enterotoxigenic Escherichia coli Reveals a Distinct Transition Phase before Entry into Early Stationary Phase with Shifts in Tryptophan, Fucose, and Putrescine Metabolism and Degradation of Neurotransmitter Precursors

  Joffre E; Xiao X; Correia MSP; Nookaew I; Sasse S; Globisch D; Zhu B; Sjoling A
• Preprint: BIORXIV. 2022

  Mapping the GALNT1 substrate landscape with versatile proteomics tools

  Saei AA; Lundström S; Lyu H; Gharibi H; Lu W; Fang P; Zhang X; Meng Z; Wang J; Gaetani M; Végvári Á; Gygi S; Zubarev R
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022;23(15):8371

  First Experimental Evidence for Reversibility of Ammonia Loss from Asparagine

  Wang J; Rodin S; Saei AA; Zhang X; Zubarev RA
• Article: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2022;72(7)

  Whole genome-based taxonomy of Shewanella and Parashewanella

  Martin-Rodriguez AJ; Meier-Kolthoff JP
• Article: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2022;72(7)

  Pseudomonas boanensis sp. nov., a bacterium isolated from river water used for household purposes in Boane District, Mozambique

  Nicklasson M; Martin-Rodriguez AJ; Thorell K; Higdon SM; Neves L; Mussagy A; Rydberg HA; Hernroth B; Svensson-Stadler L; Sjoling A
• Article: BRAIN, BEHAVIOR, & IMMUNITY - HEALTH. 2022;22:100468

  Longitudinal assessment of inflammatory markers in the peripartum period by depressive symptom trajectory groups

  Brann E; Skalkidou A; Schwarz J; Papadopoulos FC; Fransson E; Poromaa IS
• Letter: LANCET DIABETES & ENDOCRINOLOGY. 2022;10(7):481-483

  Cross-sectional associations between the gut microbe Ruminococcus gnavus and features of the metabolic syndrome

  Grahnemo L; Nethander M; Coward E; Gabrielsen ME; Sree S; Billod J-M; Engstrand L; Abrahamsson S; Langhammer A; Hveem K; Ohlsson C
• Article: HUMAN REPRODUCTION. 2022;37(7):1525-1543

  The healthy female microbiome across body sites: effect of hormonal contraceptives and the menstrual cycle

  Krog MC; Hugerth LW; Fransson E; Bashir Z; Andersen AN; Edfeldt G; Engstrand L; Schuppe-Koistinen I; Nielsen HS
• Article: ACS APPLIED BIO MATERIALS. 2022;5(6):2643-2663

  Mass Spectrometry, Structural Analysis, and Anti-Inflammatory Properties of Photo-Cross-Linked Human Albumin Hydrogels

  Sharifi S; Saei AA; Gharibi H; Mahmoud NN; Harkins S; Dararatana N; Lisabeth EM; Serpooshan V; Vegvari A; Moore A; Mahmoudi M
• Article: CURRENT MICROBIOLOGY. 2022;79(7):215

  A Pilot Study Investigating Faecal Microbiota After Two Dietary Interventions in Children with Juvenile Idiopathic Arthritis

  Berntson L; Oman A; Engstrand L; Dicksved J
• Article: EBIOMEDICINE. 2022;80:104061

  Higher levels of Bifidobacteria and tumor necrosis factor in children with drug-resistant epilepsy are associated with anti-seizure response to the ketogenic diet

  Dahlin M; Singleton SS; David JA; Basuchoudhary A; Wickstrom R; Mazumder R; Prast-Nielsen S
• Article: JOURNAL OF DERMATOLOGICAL SCIENCE. 2022;106(3):132-140

  Influence of FLG loss-of-function mutations in host-microbe interactions during atopic skin inflammation

  Olah P; Szlavicz E; Kuchner M; Nemmer J; Zeeuwen P; Lefevre-Utile A; Fyhrquist N; Prast-Nielsen S; Skoog T; Serra A; Rodriguez E; Raap U; Meller S; Gyulai R; Hupe P; Kere J; Levi-Schaffer F; Tsoka S; Alexander H; Nestle FO; Schroeder JM; Weidinger S; van den Bogaard E; Soumelis V; Greco D; Barker J; Lauerma A; Ranki A; Andersson B; Alenius H; Homey B
• Article: LANCET GASTROENTEROLOGY & HEPATOLOGY. 2022;7(6):513-521

  Once-only colonoscopy or two rounds of faecal immunochemical testing 2 years apart for colorectal cancer screening (SCREESCO): preliminary report of a randomised controlled trial

  Forsberg A; Westerberg M; Metcalfe C; Steele R; Blom J; Engstrand L; Fritzell K; Hellstrom M; Levin L-A; Lowbeer C; Pischel A; Stromberg U; Tornberg S; Wengstrom Y; Ekbom A; Holmberg L; Hultcrantz R
• Article: BIOMEDICINE & PHARMACOTHERAPY. 2022;150:113036

  The significance of interferon gamma inducible protein 16 (IFI16) expression in drug resistant ovarian cancer cell lines

  Borucka J; Sterzyńska K; Kaźmierczak D; Świerczewska M; Nowacka M; Wojtowicz K; Klejewski A; Nowicki M; Zabel M; Ramlau R; Januchowski R
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022;23(10):5846

  The Profile of MicroRNA Expression and Potential Role in the Regulation of Drug-Resistant Genes in Doxorubicin and Topotecan Resistant Ovarian Cancer Cell Lines.

  Stasiak P; Kaźmierczak D; Jopek K; Nowicki M; Rucinski M; Januchowski R
• Article: ELIFE. 2022;11:e74549

  Redox regulation of PTPN22 affects the severity of T-cell-dependent autoimmune inflammation

  James J; Chen Y; Hernandez CM; Forster F; Dagnell M; Cheng Q; Saei AA; Gharibi H; Lahore GF; astrand A; Malhotra R; Malissen B; Zubarev RA; Arner ESJ; Holmdahl R
• Article: VIRUSES-BASEL. 2022;14(5):1040

  Analysis of Human Papillomavirus (HPV) and Polyomaviruses (HPyVs) in Adenoid Cystic Carcinoma (AdCC) of the Head and Neck Region Reveals Three HPV-Positive Cases with Adenoid Cystic-like Features

  Zupancic M; Holzhauser S; Cheng L; Ramqvist T; Du J; Friesland S; Nasman A; Dalianis T
• Article: SCIENTIFIC REPORTS. 2022;12(1):7926

  The vaginal microbiome and the risk of preterm birth: a systematic review and network meta-analysis

  Gudnadottir U; Debelius JW; Du J; Hugerth LW; Danielsson H; Schuppe-Koistinen I; Fransson E; Brusselaers N
• Article: CELL HOST & MICROBE. 2022;30(5):726-739.e3

  Dynamics of the normal gut microbiota: A longitudinal one-year population study in Sweden

  Olsson LM; Boulund F; Nilsson S; Khan MT; Gummesson A; Fagerberg L; Engstrand L; Perkins R; Uhlen M; Bergstrom G; Tremaroli V; Backhed F
• Article: TRANSLATIONAL PSYCHIATRY. 2022;12(1):186

  Maternal prenatal depressive symptoms and toddler behavior: an umbilical cord blood epigenome-wide association study

  Kallak TK; Fransson E; Brann E; Berglund H; Lager S; Comasco E; Lyle R; Skalkidou A
• Article: NPJ BIOFILMS AND MICROBIOMES. 2022;8(1):34

  The right bug in the right place: opportunities for bacterial vaginosis treatment

  Wu S; Hugerth LW; Schuppe-Koistinen I; Du J
• Article: TRANSLATIONAL LUNG CANCER RESEARCH. 2022;11(5):722-734

  Elevated expression of miR-494-3p is associated with resistance to osimertinib in EGFR T790M-positive non-small cell lung cancer

  Kazmierczak D; Eide IJZ; Gencheva R; Lai Y; Lewensohn R; Tsakonas G; Grundberg O; de Petris L; McGowan M; Brustugun OT; Ekman S; Hydbring P
• Article: PLOS PATHOGENS. 2022;18(5):e1010494

  Multi-omics analysis of the cervical epithelial integrity of women using depot medroxyprogesterone acetate

  Bradley F; Boger MF; Kaldhusdal V; Ahlberg A; Edfeldt G; Lajoie J; Bergstrom S; Omollo K; Damdimopoulos A; Czarnewski P; Manberg A; Oyugi J; Kimani J; Nilsson P; Fowke K; Tjernlund A; Broliden K
• Article: ALLERGY. 2022;77(5):1486-1498

  Transcriptome-based identification of novel endotypes in adult atopic dermatitis

  Lefevre-Utile A; Saichi M; Olah P; Delord M; Homey B; Soumelis V
• Article: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 2022;77(5):1461-1467

  Antibiotic use during pregnancy and the risk of preterm birth: a population-based Swedish cohort study

  Nguyen MH; Fornes R; Kamau N; Danielsson H; Callens S; Fransson E; Engstrand L; Bruyndonckx R; Brusselaers N
• Article: BMJ OPEN. 2022;12(4):e059033

  Predicting perinatal health outcomes using smartphone-based digital phenotyping and machine learning in a prospective Swedish cohort (Mom2B): study protocol

  Bilal AM; Fransson E; Brann E; Eriksson A; Zhong M; Giden K; Elofsson U; Axfors C; Skalkidou A; Papadopoulos FC
• Article: MSYSTEMS. 2022;7(2):e0151821-e01521

  Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation

  Martin-Rodriguez AJ; Higdon SM; Thorell K; Tellgren-Roth C; Sjoling A; Galperin MY; Krell T; Romling U
• Article: JOURNAL OF INFECTIOUS DISEASES. 2022;225(7):1151-1161

  Regular Use of Depot Medroxyprogesterone Acetate Causes Thinning of the Superficial Lining and Apical Distribution of Human Immunodeficiency Virus Target Cells in the Human Ectocervix

  Edfeldt G; Lajoie J; Rohl M; Oyugi J; Ahlberg A; Khalilzadeh-Binicy B; Bradley F; Mack M; Kimani J; Omollo K; Wahlby C; Fowke KR; Broliden K; Tjernlund A
• Article: CELL SYSTEMS. 2022;13(3):241-255.e7

  Multiomics and digital monitoring during lifestyle changes reveal independent dimensions of human biology and health

  Marabita F; James T; Karhu A; Virtanen H; Kettunen K; Stenlund H; Boulund F; Hellstrom C; Neiman M; Mills R; Perheentupa T; Laivuori H; Helkkula P; Byrne M; Jokinen I; Honko H; Kallonen A; Ermes M; Simila H; Lindholm M; Widen E; Ripatti S; Perala-Heape M; Engstrand L; Nilsson P; Moritz T; Miettinen T; Sallinen R; Kallioniemi O
• Review: HUMAN REPRODUCTION OPEN. 2022;2022(2):hoac015

  The microbiome in reproductive health: protocol for a systems biology approach using a prospective, observational study design

  Krog MC; Madsen ME; Bliddal S; Bashir Z; Vexo LE; Hartwell D; Hugerth LW; Fransson E; Hamsten M; Boulund F; Wannerberger K; Engstrand L; Schuppe-Koistinen I; Nielsen HS
• Article: CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION. 2022;31(3):528-535

  Use of Antibiotics and Risk of Psychiatric Disorders in Newly Diagnosed Cancer Patients: A Population-Based Cohort Study in Sweden

  Hu K; Smedby KE; Sjolander A; Montgomery S; Valdimarsdottir U; Engstrand L; Fang F; Fall K
• Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2022;144(6):2484-2487

  Abnormal (Hydroxy)proline Deuterium Content Redefines Hydrogen Chemical Mass

  Gharibi H; Chernobrovkin AL; Eriksson G; Saei AA; Timmons Z; Kitchener AC; Kalthoff DC; Liden K; Makarov AA; Zubarev RA
• Article: BEHAVIOURAL BRAIN RESEARCH. 2022;418:113635

  Metabolite trajectories across the perinatal period and mental health: A preliminary study of tryptophan-related metabolites, bile acids and microbial composition

  Kimmel M; Jin W; Xia K; Lun K; Azcarate-Peril A; Plantinga A; Wu M; Ataei S; Rackers H; Carroll I; Meltzer-Brody S; Fransson E; Knickmeyer R
• Article: REPRODUCTIVE BIOLOGY AND ENDOCRINOLOGY. 2022;20(1):30

  Pregnancy, perinatal and childhood outcomes in women with and without polycystic ovary syndrome and metformin during pregnancy: a nationwide population-based study

  Fornes R; Simin J; Minh HN; Cruz G; Crisosto N; van der Schaaf M; Engstrand L; Brusselaers N
• Review: BIOTECH. 2022;11(1):3

  Hacking Commensal Bacteria to Consolidate the Adaptive Mucosal Immune Response in the Gut-Lung Axis: Future Possibilities for SARS-CoV-2 Protection

  Pereira M; Oh JK; Kang D-K; Engstrand L; Valeriano VD
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022;23(1):526

  The Profile of MicroRNA Expression and Potential Role in the Regulation of Drug-Resistant Genes in Cisplatin- and Paclitaxel-Resistant Ovarian Cancer Cell Lines

  Kazmierczak D; Jopek K; Sterzynska K; Nowicki M; Rucinski M; Januchowski R
• Article: FRONTIERS IN MICROBIOLOGY. 2022;13:1017092

  Subinhibitory antibiotic concentrations promote the horizontal transfer of plasmid-borne resistance genes from Klebsiellae pneumoniae to Escherichia coli

  Ding M; Ye Z; Liu L; Wang W; Chen Q; Zhang F; Wang Y; Sjoling A; Martin-Rodriguez AJ; Hu R; Chen W; Zhou Y
• Article: FRONTIERS IN MICROBIOLOGY. 2022;13:997849

  Conjugative transfer of multi-drug resistance IncN plasmids from environmental waterborne bacteria to Escherichia coli

  Guzman-Otazo J; Joffre E; Agramont J; Mamani N; Jutkina J; Boulund F; Hu YOO; Jumilla-Lorenz D; Farewell A; Larsson DGJ; Flach C-F; Iniguez V; Sjoling A
• Article: FRONTIERS IN GLOBAL WOMEN'S HEALTH. 2022;3:820353

  Working Memory During Late Pregnancy: Associations With Antepartum and Postpartum Depression Symptoms

  Liakea I; Ashish KC; Brann E; Fransson E; Poromaa IS; Papadopoulos FC; Skalkidou A
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2022;12:831409

  Influence of Pre-treatment Saliva Microbial Diversity and Composition on Nasopharyngeal Carcinoma Prognosis

  Du Y; Feng R; Chang ET; Debelius JW; Yin L; Xu M; Huang T; Zhou X; Xiao X; Li Y; Liao J; Zheng Y; Huang G; Adami H-O; Zhang Z; Cai Y; Ye W
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2022;12:897531

  Isolation and Characterization of vB_kpnM_17-11, a Novel Phage Efficient Against Carbapenem-Resistant Klebsiella pneumoniae

  Bai J; Zhang F; Liang S; Chen Q; Wang W; Wang Y; Martin-Rodriguez AJ; Sjoeling A; Hu R; Zhou Y
• Article: FRONTIERS IN EARTH SCIENCE. 2022;10:978137

  Supraglacial lake expansion, intensified lake drainage frequency, and first observation of coupled lake drainage, during 1985-2020 at Ryder Glacier, Northern Greenland

  Otto J; Holmes FA; Kirchner N
• Journal article: FRONTIERS IN IMMUNOLOGY. 2022;13:823685

  TLR2 Activation by Porphyromonas gingivalis Requires Both PPAD Activity and Fimbriae.

  Wielento A; Bereta GP; Łagosz-Ćwik KB; Eick S; Lamont RJ; Grabiec AM; Potempa J
• Book chapter: ENCYCLOPEDIA OF INFECTION AND IMMUNITY. 2022;p. 72-81

  Bacterial Gastrointestinal Infections

  Martín-Rodríguez AJ; Joffré E; Sjöling Å
• Preprint: RESEARCH SQUARE. 2021

  Ultralight ultrafast enzymes

  Zhang X; Meng Z; Beusch C; Gharibi H; Cheng Q; Stefano L; Wang J; Saei A; Vegvari A; Gaetani M; Zubarev R
• Article: MICROORGANISMS. 2021;9(12):2540

  Genomic and Phenotypic Characteristics in Geographically Separated Clinical Campylobacter jejuni ST353CC Isolates

  Johansson C; Kampmann C; Nilsson A; Dicksved J; Engstrand L; Rautelin H
• Preprint: MEDRXIV. 2021

  Metagenomic and single-cell RNA-seq survey of the H. pylori-infected stomach in asymptomatic individuals

  Sorini C; Tripathi K; Wu S; Higdon S; Wang J; Cheng L; Banerjee S; Reinhardt A; Kreslavsky T; Thorell A; Engstrand L; Du J; Villablanca E
• Article: JOURNAL OF AFFECTIVE DISORDERS. 2021;295:733-739

  Migraine as a risk factor for mixed symptoms of peripartum depression and anxiety in late pregnancy: A prospective cohort study

  Welander NZ; Mwinyi J; Asif S; Schioth HB; Skalkidou A; Fransson E
• Article: ACTA PAEDIATRICA. 2021;110(12):3294-3301

  Birth order and socioeconomic disadvantage predict behavioural and emotional problems at age 3 years

  Hjern A; Bergstrom M; Fransson E; Lindfors A; Bergqvist K
• Article: NATURE COMMUNICATIONS. 2021;12(1):6558

  An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation

  Sabatier P; Beusch CM; Saei AA; Aoun M; Moruzzi N; Coelho A; Leijten N; Nordenskjold M; Micke P; Maltseva D; Tonevitsky AG; Millischer V; Villaescusa JC; Kadekar S; Gaetani M; Altynbekova K; Kel A; Berggren P-O; Simonson O; Grinnemo K-H; Holmdahl R; Rodin S; Zubarev RA
• Article: ELIFE. 2021;10:e70843

  Rapid and sensitive detection of SARS-CoV-2 infection using quantitative peptide enrichment LC-MS analysis

  Hober A; Tran-Minh KH; Foley D; McDonald T; Vissers JP; Pattison R; Ferries S; Hermansson S; Betner I; Uhlen M; Razavi M; Yip R; Pope ME; Pearson TW; Andersson LN; Bartlett A; Calton L; Alm JJ; Engstrand L; Edfors F
• Article: BRAIN, BEHAVIOR, & IMMUNITY - HEALTH. 2021;17:100332

  Psychoneuroimmunology in the context of perinatal depression - Tools for improved clinical practice

  Fransson E
• Article: TRAVEL MEDICINE AND INFECTIOUS DISEASE. 2021;44:102199

  Changes to human faecal microbiota after international travel

  Kampmann C; Dicksved J; Engstrand L; Rautelin H
• Review: ADVANCED SCIENCE. 2021;8(21):e2100556

  Nanotechnology for Targeted Detection and Removal of Bacteria: Opportunities and Challenges

  Hajipour MJ; Saei AA; Walker ED; Conley B; Omidi Y; Lee K-B; Mahmoudi M
• Article: LAKARTIDNINGEN. 2021;118:21113

  [Precision diagnostics in clinical microbiology].

  G Giske C; Allander T; Fröding I; Ininbergs K; Mölling P; Engstrand L; Albert J
• Article: JOURNAL OF CELLULAR AND MOLECULAR MEDICINE. 2021;25(20):9523-9532

  Interaction between insulin and androgen signalling in decidualization, cell migration and trophoblast invasion in vitro

  Hirschberg AL; Jakson I; Graells Brugalla C; Salamon D; Ujvari D
• Review: JOURNAL OF INTERNAL MEDICINE. 2021;290(4):758-788

  Gut microbiome and amyotrophic lateral sclerosis: A systematic review of current evidence

  Sun J; Huang T; Debelius JW; Fang F
• Article: HEPATOLOGY. 2021;74(4):2021-2031

  Association Between Proton Pump Inhibitor Use and Biliary Tract Cancer Risk: A Swedish Population-Based Cohort Study

  Kamal H; Sadr-Azodi O; Engstrand L; Brusselaers N
• Article: JOURNAL OF RHEUMATOLOGY. 2021;48(10):1589-1595

  Fecal Microbiota in Untreated Children With Juvenile Idiopathic Arthritis: A Comparison With Healthy Children and Healthy Siblings

  Oman A; Dicksved J; Engstrand L; Berntson L
• Article: OBSTETRICS AND GYNECOLOGY. 2021;138(4):633-646

  Associations Between Maternal Depression, Antidepressant Use During Pregnancy, and Adverse Pregnancy Outcomes: An Individual Participant Data Meta-analysis.

  Vlenterie R; van Gelder MMHJ; Anderson HR; Andersson L; Broekman BFP; Dubnov-Raz G; El Marroun H; Ferreira E; Fransson E; van der Heijden FMMA; Holzman CB; Kim JJ; Khashan AS; Kirkwood BR; Kuijpers HJH; Lahti-Pulkkinen M; Mason D; Misra D; Niemi M; Nordeng HME; Peacock JL; Pickett KE; Prady SL; Premji SS; Räikkönen K; Rubertsson C; Sahingoz M; Shaikh K; Silver RK; Slaughter-Acey J; Soremekun S; Stein DJ; Sundström-Poromaa I; Sutter-Dallay A-L; Tiemeier H; Uguz F; Varela P; Vrijkotte TGM; Winterfeld U; Zar HJ; Zervas IM; Prins JB; Pop-Purceleanu M; Roeleveld N
• Article: INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES. 2021;111:313-321

  Alterations of gut microbiota in patients with active pulmonary tuberculosis in China: a pilot study

  Shi W; Hu Y; Ning Z; Xia F; Wu M; Hu YOO; Chen C; Prast-Nielsen S; Xu B
• Article: JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM. 2021;106(10):e4128-e4141

  Association of Gut Microbiota during Early Pregnancy with Risk of Incident Gestational Diabetes Mellitus

  Hu P; Chen X; Chu X; Fan M; Ye Y; Wang Y; Han M; Yang X; Yuan J; Zha L; Zhao B; Yang C-X; Qi X-R; Ning K; Debelius J; Ye W; Xiong B; Pan X-F; Pan A
• Article: CELL DEATH & DISEASE. 2021;12(10):875

  Combination of tyrosine kinase inhibitors and the MCL1 inhibitor S63845 exerts synergistic antitumorigenic effects on CML cells

  Malyukova A; Ujvari D; Yektaei-Karin E; Zovko A; Madapura HS; Keszei M; Nagy N; Lotfi K; Bjorn N; Wallvik J; Tamai M; Nguyen TTT; Akahane K; Inukai T; Stenke L; Salamon D
• Article: MOLECULES. 2021;26(18):5695

  Exploring the Bile Stress Response of Lactobacillus mucosae LM1 through Exoproteome Analysis

  Bagon BB; Oh JK; Valeriano VDV; Pajarillo EAB; Kang D-K
• Article: BRITISH JOURNAL OF CANCER. 2021;125(6):893-900

  Proton pump inhibitors and survival in patients with colorectal cancer: a Swedish population-based cohort study

  Wang X; Liu Q; Halfdanarson OO; Zoega H; Sadr-Azodi O; Engstrand L; Fall K; Brusselaers N
• Article: ACTA PAEDIATRICA. 2021;110(9):2586-2593

  Living arrangements after parental separation have minimal impact on mental health at age 7 years

  Hjern A; Bergstrom M; Fransson E; Kjaer Urhoj S
• Preprint: RESEARCH SQUARE. 2021

  The Healthy Female Microbiome Across Body Sites: Effect of Hormonal Contraceptives and the Menstrual Cycle

  Krog MC; Hugerth LW; Fransson E; Bashir Z; Andersen AN; Edfeldt G; Engstrand L; Schuppe-Koistinen I; Nielsen HS
• Preprint: BIORXIV. 2021

  Enterotoxigenic Escherichia coli display a distinct growth phase before entry into stationary phase with shifts in tryptophan- fucose- and putrescine metabolism and degradation of neurotransmitter precursors

  Joffré E; Xiao X; Correia M; Nookaew I; Sasse S; Globisch D; Zhu B; Sjöling Å
• Article: GENOME ANNOUNCEMENTS. 2021;10(31):e0055921-10.1128/mra.00521

  Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae

  Tellgren-Roth C; Thorell K; Galperin MY; Krell T; Romling U; Sjoling A; Martin-Rodriguez AJ
• Article: JOURNAL OF INTERNAL MEDICINE. 2021;290(2):430-436

  SARS-CoV-2 infections amongst personnel providing home care services for older persons in Stockholm, Sweden

  Hassan SS; Seigerud A; Abdirahman R; Muhr LSA; Kleppe SN; Pin E; Manberg A; Hober S; Nilsson P; Engstrand L; Elfstrom KM; Blomqvist J; Lundgren KC; Dillner J
• Preprint: RESEARCH SQUARE. 2021

  The Healthy Female Microbiome Across Body Sites: Effect of Hormonal Contraceptives and the Menstrual Cycle

  Krog MC; Hugerth LW; Fransson E; Bashir Z; Andersen AN; Edfeldt G; Engstrand L; Nielsen HS; Schuppe-Koistinen I
• Article: ACTA ONCOLOGICA. 2021;60(7):881-887

  Prediagnostic use of estrogen-only therapy is associated with improved colorectal cancer survival in menopausal women: a Swedish population-based cohort study

  Simin J; Liu Q; Wang X; Fall K; Williams C; Callens S; Engstrand L; Brusselaers N
• Article: JOURNAL OF INFECTIOUS DISEASES. 2021;224(1):14-20

  High Amounts of SARS-CoV-2 Precede Sickness Among Asymptomatic Health Care Workers

  Dillner J; Elfstrom KM; Blomqvist J; Engstrand L; Uhlen M; Eklund C; Boulund F; Lagheden C; Hamsten M; Nordqvist-Kleppe S; Seifert M; Hellstrom C; Olofsson J; Andersson E; Falk AJ; Bergstrom S; Hultin E; Pin E; Pimenoff VN; Hassan S; Manberg A; Nilsson P; Hedhammar M; Hober S; Mattsson J; Muhr LSA; Lundgren KC
• Article: JOURNAL OF HUMAN KINETICS. 2021;79:187-196

  Effects of Plyometric Training on Soft and Hard Surfaces for Improving Running Economy.

  Lännerström J; Nilsson LC; Cardinale DA; Björklund G; Larsen FJ
• Preprint: BIORXIV. 2021

  Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations

  Thorpe HA; Tourrette E; Yahara K; Vale FF; Liu S; Oleastro M; Alarcon T; Perets T; Latifi-Navid S; Yamaoka Y; Martinez-Gonzalez B; Karayiannis I; Karamitros T; Sgouras DN; Elamin W; Pascoe B; Sheppard SK; Ronkainen J; Aro P; Engstrand L; Agreus L; Suerbaum S; Thorell K; Falush D
• Article: CHILDREN-BASEL. 2021;8(6):473

  Mental Health in Schoolchildren in Joint Physical Custody: A Longitudinal Study

  Hjern A; Urhoj SK; Fransson E; Bergstrom M
• Preprint: MEDRXIV. 2021

  Rapid and Sensitive Detection of SARS-CoV-2 Infection Using Quantitative Peptide Enrichment LC-MS Analysis

  Hober A; Hua T-MK; Foley D; McDonald T; Vissers JPC; Pattison R; Ferries S; Hermansson S; Betner I; Uhlen M; Razavi M; Yip R; Pope ME; Pearson TW; Anderson NL; Bartlett A; Calton L; Alm JJ; Engstrand L; Edfors F
• Article: SCIENTIFIC REPORTS. 2021;11(1):11733

  Football and team handball training postpone cellular aging in women

  Hagman M; Fristrup B; Michelin R; Krustrup P; Asghar M
• Article: PLOS COMPUTATIONAL BIOLOGY. 2021;17(6):e1009056

  Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

  Dillon MR; Bolyen E; Adamov A; Belk A; Borsom E; Burcham Z; Debelius JW; Deel H; Emmons A; Estaki M; Herman C; Keefe CR; Morton JT; Oliveira RRM; Sanchez A; Simard A; Vazquez-Baeza Y; Ziemski M; Miwa HE; Kerere TA; Coote C; Bonneau R; Knight R; Oliveira G; Gopalasingam P; Kaehler BD; Cope EK; Metcalf JL; Robeson MSII; Bokulich NA; Caporaso JG
• Article: ALIMENTARY PHARMACOLOGY & THERAPEUTICS. 2021;53(11):1216-1225

  Menopausal hormone therapies and risk of colorectal cancer: a Swedish matched-cohort study

  Liu Q; Simin J; Debelius J; Fall K; Sadr-Azodi O; Engstrand L; Williams C; Brusselaers N
• Journal article: SCIENTIFIC REPORTS. 2021;11(1):10770

  hTERT-immortalized gingival fibroblasts respond to cytokines but fail to mimic primary cell responses to Porphyromonas gingivalis.

  Lagosz-Cwik KB; Wielento A; Lipska W; Kantorowicz M; Darczuk D; Kaczmarzyk T; Gibbs S; Potempa J; Grabiec AM
• Article: JOURNAL OF AFFECTIVE DISORDERS. 2021;287:165-173

  Who do we miss when screening for postpartum depression? A population-based study in a Swedish region

  Brann E; Fransson E; Wikman A; Kollia N; Nguyen D; Lilliecreutz C; Skalkidou A
• Review: VIRUSES-BASEL. 2021;13(5):910

  Prognostic Markers and Driver Genes and Options for Targeted Therapy in Human-Papillomavirus-Positive Tonsillar and Base-of-Tongue Squamous Cell Carcinoma

  Nasman A; Holzhauser S; Kostopoulou ON; Zupancic M; Ahrlund-Richter A; Du J; Dalianis T
• Article: TRANSLATIONAL PSYCHIATRY. 2021;11(1):286

  Heart rate variability in late pregnancy: exploration of distinctive patterns in relation to maternal mental health

  Kimmel MC; Fransson E; Cunningham JL; Brann E; Grewen K; Boschiero D; Chrousos GP; Meltzer-Brody S; Skalkidou A
• Review: BRITISH JOURNAL OF CANCER. 2021;124(10):1623-1636

  Pancreatic cancer cachexia: three dimensions of a complex syndrome

  Kordes M; Larsson L; Engstrand L; Lohr J-M
• Article: MSYSTEMS. 2021;6(3):e00175-e00121

  A MicroRNA Gene Panel Predicts the Vaginal Microbiota Composition

  Cheng L; Kazmierczak D; Norenhag J; Hamsten M; Fransson E; Schuppe-Koistinen I; Olovsson M; Engstrand L; Hydbring P; Du J
• Article: MICROBIAL BIOTECHNOLOGY. 2021;14(3):1183-1200

  Regulation of colony morphology and biofilm formation in Shewanella algae

  Martin-Rodriguez AJ; Villion K; Yilmaz-Turan S; Vilaplana F; Sjoling A; Romling U
• Article: SCIENTIFIC REPORTS. 2021;11(1):9256

  Long-read-sequenced reference genomes of the seven major lineages of enterotoxigenic Escherichia coli (ETEC) circulating in modern time

  von Mentzer A; Blackwell GA; Pickard D; Boinett CJ; Joffre E; Page AJ; Svennerholm A-M; Dougan G; Sjoling A
• Article: PEDIATRIC RHEUMATOLOGY. 2021;19(1):55

  Fecal microbiota in children with juvenile idiopathic arthritis treated with methotrexate or etanercept

  Oman A; Dicksved J; Engstrand L; Berntson L
• Article: CLINICAL EPIGENETICS. 2021;13(1):78

  DNA methylation in cord blood in association with prenatal depressive symptoms

  Kallak TK; Brann E; Fransson E; Johansson A; Lager S; Comasco E; Lyle R; Skalkidou A
• Preprint: BIORXIV. 2021

  RNA degradation analysis reveals ribosome dynamics in complex microbiome samples

  Huch S; Nersisyan L; Ropat M; Barret D; Wang J; Huerta-Cepas J; Wei W; Steinmetz L; Engstrand L; Pelechano V
• Article: CANCERS. 2021;13(8):1807

  A G316A Polymorphism in the Ornithine Decarboxylase Gene Promoter Modulates MYCN-Driven Childhood Neuroblastoma

  Gamble LD; Purgato S; Henderson MJ; Di Giacomo S; Russell AJ; Pigini P; Murray J; Valli E; Milazzo G; Giorgi FM; Cowley M; Ashton LJ; Bhalshankar J; Schleiermacher G; Rihani A; Van Maerken T; Vandesompele J; Speleman F; Versteeg R; Koster J; Eggert A; Noguera R; Stallings RL; Tonini GP; Fong K; Vaksman Z; Diskin SJ; Maris JM; London WB; Marshall GM; Ziegler DS; Hogarty MD; Perini G; Norris MD; Haber M
• Preprint: RESEARCH SQUARE. 2021

  Global and temporal state of the human gut microbiome in health and disease

  Shoaie S; Lee S; Almeida M; Bidkhori G; Pons N; Onate F; Chatelier E; Begum N; Proffitt C; Rosário D; Vaga S; Park J; von Feilitzen K; Johansson F; Meslier V; Harzandi A; Etienne-Mesmin L; Edwards L; Lombard V; Gauthier F; Steves C; Gomez-Cabrero D; Henrissat B; Lee D; Shawcross D; Blanquet-Diot S; Proctor G; Engstrand L; Mardinoglu A; Nielsen J; Ehrlich S; Uhlen M
• Article: MICROBIAL GENOMICS. 2021;7(6):000554

  Functional analysis of colonization factor antigen I positive enterotoxigenic Escherichia coli identifies genes implicated in survival in water and host colonization

  Abd El Ghany M; Barquist L; Clare S; Brandt C; Mayho M; Prime EJ; Sjoling A; Turner AK; Klena JD; Kingsley RA; Hill-Cawthorne GA; Dougan G; Pickard D
• Preprint: BIORXIV. 2021

  A comparison of approaches to scaffolding multiple regions along the 16S rRNA gene for improved resolution

  Debelius J; Robeson M; Hugerth L; Boulund F; Ye W; Engstrand L
• Article: MSYSTEMS. 2021;6(2):e01302-e01320

  Tonsillar Microbiota: a Cross-Sectional Study of Patients with Chronic Tonsillitis or Tonsillar Hypertrophy

  Wu S; Hammarstedt-Nordenvall L; Jangard M; Cheng L; Radu SA; Angelidou P; Zha Y; Hamsten M; Engstrand L; Du J; Ternhag A
• Article: VACCINES. 2021;9(3):217

  HIV-Exposed Seronegative Sex Workers Express Low T-Cell Activation and an Intact Ectocervical Tissue Microenvironment

  Rohl M; Tjernlund A; Lajoie J; Edfeldt G; Bradley F; Bergstrom S; Kaldhusdal V; Ahlberg A; Manberg A; Omollo K; Boily-Larouche G; Asghar M; Kwon DS; Oyugi J; Kimani J; Nilsson P; Fowke KR; Broliden K
• Letter: JOURNAL OF GASTROENTEROLOGY. 2021;56(3):295-296

  Proton pump inhibitors and the risk of pancreatic cancer

  Brusselaers N; Sadr-Azodi O; Engstrand L
• Article: IRANIAN JOURNAL OF KIDNEY DISEASES. 2021;15(2):121-133

  Predictive Biomarker Panel in Proliferative Lupus Nephritis, Two-Dimensional Shotgun

  Ghasemi M; Kalantari S; Zubarev RA; Nafar M; Saei AA; Heidari S-S; Baghestani AR; Samavat S
• Article: MUCOSAL IMMUNOLOGY. 2021;14(2):411-419

  Liver X receptor regulates Th17 and RORγt⁺Treg cells by distinct mechanisms

  Parigi SM; Das S; Frede A; Cardoso RF; Tripathi KP; Donas C; Hu YOO; Antonson P; Engstrand L; Gustafsson J-A; Villablanca EJ
• Article: AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY. 2021;224(3):296.e1-296.e23

  No evidence for a placental microbiome in human pregnancies at term

  Sterpu I; Fransson E; Hugerth LW; Du J; Pereira M; Cheng L; Radu SA; Calderon-Perez L; Zha Y; Angelidou P; Pennhag A; Boulund F; Scheynius A; Engstrand L; Wiberg-Itzel E; Schuppe-Koistinen I
• Article: NATURE COMMUNICATIONS. 2021;12(1):1296

  System-wide identification and prioritization of enzyme substrates by thermal analysis

  Saei AA; Beusch CM; Sabatier P; Wells JA; Gharibi H; Meng Z; Chernobrovkin A; Rodin S; Nareoja K; Thorsell A-G; Karlberg T; Cheng Q; Lundstrom SL; Gaetani M; Vegvari A; Arner ESJ; Schuler H; Zubarev RA
• Preprint: RESEARCH SQUARE. 2021

  SIESTA as a universal unbiased proteomics approach for identification and prioritization of enzyme substrates 

  Saei AA; Beusch C; Sabatier P; Wells JA; Gharibi H; Meng Z; Chernobrovkin A; Rodin S; Näreoja K; Thorsell A-G; Karlberg T; Cheng Q; Lundström S; Gaetani M; Végvári Á; Arnér ESJ; Schüler H; Zubarev R
• Preprint: RESEARCH SQUARE. 2021

  Long-Read-Sequenced Reference Genomes of the Seven Major Lineages of Enterotoxigenic Escherichia Coli (ETEC) Circulating in Modern Time

  von Mentzer A; Blackwell GA; Pickard D; Boinett CJ; Joffré E; Page AJ; Svennerholm A-M; Dougan G; Sjöling Å
• Article: PROTEOMES. 2021;9(1):10

  Exoproteome Perspective on the Bile Stress Response of Lactobacillus johnsonii

  Bagon BB; Valeriano VDV; Oh JK; Pajarillo EAB; Lee JY; Kang D-K
• Article: BIOINTERPHASES. 2021;16(1):011008

  Can the biomolecular corona induce an allergic reaction?-A proof-of-concept study

  Muehe A; Nejadnik H; Muehe H; Rosenberg J; Gharibi H; Saei AA; Lyu S-C; Nadeau KC; Mahmoudi M; Daldrup-Link HE
• Review: ARCHIVES OF GYNECOLOGY AND OBSTETRICS. 2021;303(2):329-335

  Human papilloma virus (HPV) prevalence upon HPV vaccination in Swedish youth: a review based on our findings 2008-2018, and perspectives on cancer prevention

  Du J; Ahrlund-Richter A; Nasman A; Dalianis T
• Article: MOLECULAR MICROBIOLOGY. 2021;115(2):255-271

  A recently isolated human commensalEscherichia coliST10 clone member mediates enhanced thermotolerance and tetrathionate respiration on a P1 phage-derived IncY plasmid

  Kamal SM; Cimdins-Ahne A; Lee C; Li F; Martin-Rodriguez AJ; Seferbekova Z; Afasizhev R; Wami HT; Katikaridis P; Meins L; Luensdorf H; Dobrindt U; Mogk A; Romling U
• Article: NPJ BIOFILMS AND MICROBIOMES. 2021;7(1):9

  Reduction of alternative electron acceptors drives biofilm formation in Shewanella algae

  Martin-Rodriguez AJ; Reyes-Darias JA; Martin-Mora D; Gonzalez JM; Krell T; Romling U
• Article: TRANSLATIONAL PSYCHIATRY. 2021;11(1):45

  Prenatal androgen exposure causes a sexually dimorphic transgenerational increase in offspring susceptibility to anxiety disorders

  Risal S; Manti M; Lu H; Fornes R; Larsson H; Benrick A; Deng Q; Cesta CE; Rosenqvist MA; Stener-Victorin E
• Article: FRONTIERS IN MICROBIOLOGY. 2021;12:820998

  First National Genomic Epidemiological Study of Neisseria gonorrhoeae Strains Spreading Across Sweden in 2016

  Hadad R; Golparian D; Velicko I; Ohlsson A-K; Lindroth Y; Ericson E-L; Fredlund H; Engstrand L; Unemo M
• Article: FRONTIERS IN PSYCHIATRY. 2021;12:685656

  Metabolic Profiling Indicates Diversity in the Metabolic Physiologies Associated With Maternal Postpartum Depressive Symptoms

  Brann E; Malavaki C; Fransson E; Ioannidi M-K; Henriksson HE; Papadopoulos FC; Chrousos GP; Klapa MI; Skalkidou A
• Article: METHODS IN MOLECULAR BIOLOGY. 2021;2329:81-94

  Construction of a Full-Length 3'UTR Reporter System for Identification of Cell-Cycle Regulating MicroRNAs.

  Kaźmierczak D; Hydbring P
• Article: INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS. 2021;109(1):145-150

  Radiation Therapy-Induced Changes of the Nasopharyngeal Commensal Microbiome in Nasopharyngeal Carcinoma Patients

  Huang T; Debelius JW; Ploner A; Xiao X; Zhang T; Hu K; Zhang Z; Wang R; Ye W
• Article: BMJ PAEDIATRICS OPEN. 2021;5(1):e000657

  Importance of living arrangements and coparenting quality for young children's mental health after parental divorce: a cross-sectional parental survey

  Bergstrom M; Salari R; Hjern A; Hognas R; Bergqvist K; Fransson E
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2021;11:625229

  Dysbiosis of the Human Oral Microbiome During the Menstrual Cycle and Vulnerability to the External Exposures of Smoking and Dietary Sugar

  Bostanci N; Krog MC; Hugerth LW; Bashir Z; Fransson E; Boulund F; Belibasakis GN; Wannerberger K; Engstrand L; Nielsen HS; Schuppe-Koistinen I
• Conference publication: GUT. 2021;70:A208

  AN EXPANDED INTESTINAL INTRAEPITHELIAL LYMPHOCYTE COMPARTMENT IS LINKED TO SHIFTS IN COMPOSITION OF MUCOSAL MICROBIOTA

  Alexander JL; Andreasson A; Hugerth LW; Engstrand L; Walker MM; Talley NJ; Powell N
• Conference publication: REPRODUCTIVE SCIENCES. 2021;28(SUPPL 1):115A

  The Vaginal Microbiome and the Risk of Preterm Birth: A Systematic Review and Network Meta-Analysis.

  Gudnadottir U; Debelius J; Du J; Hugerth LW; Danielsson H; Schuppe-Koistinen I; Fransson E; Brusselaers N
• Conference publication: BIOPHYSICAL REVIEWS. 2021;13(6):1493

  Studies of the human microbiome in health and disease

  Engstrand L
• Corrigendum: MSPHERE. 2020;5(6):e01253-e01220

  Assessment of In Vitro and In Silico Protocols for Sequence-Based Characterization of the Human Vaginal Microbiome (vol 5, e00448-20, 2020)

  Hugerth LW; Pereira M; Zha Y; Seifert M; Kaldhusdal V; Boulund F; Krog MC; Bashir Z; Hamsten M; Fransson E; Nielsen HS; Schuppe-Koistinen I; Engstrand L
• Article: CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY. 2020;12(1):e00296

  Ileocolonic Histopathological and Microbial Alterations in the Irritable Bowel Syndrome: A Nested Community Case-Control Study

  Talley NJ; Alexander JL; Walker MM; Jones MP; Hugerth LW; Engstrand L; Agreus L; Powell N; Andreasson A
• Preprint: MEDRXIV. 2020

  SARS-CoV-2 infections among personnel providing home care services for the elderly in Stockholm, Sweden

  Hassan SS; Seigerud Å; Mühr LSA; Kleppe SN; Pin E; Månberg A; Hober S; Nilsson P; Engstrand L; Elfström KM; Blomqvist J; Lundgren KC; Dillner J
• Article: INTERNATIONAL JOURNAL OF CANCER. 2020;147(12):3349-3360

  Increased risk of mental health problems after cancer during adolescence: A register-based cohort study

  Hoven E; Ljung R; Ljungman G; Ljungman L; Skoglund C; Fransson E; Wikman A
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2020;21(24):E9543-9543

  Molecular Epidemiology of Enteroaggregative Escherichia coli (EAEC) Isolates of Hospitalized Children from Bolivia Reveal High Heterogeneity and Multidrug-Resistance

  Joffre E; Iniguez Rojas V
• Preprint: MEDRXIV. 2020

  Screening for high amounts of SARS-CoV-2 identifies pre-symptomatic subjects among healthy healthcare workers

  Dillner J; Elfström M; Blomqvist J; Engstrand L; Uhlén M; Eklund C; Boulund F; Lagheden C; Hamsten M; Nordqvist-Kleppe S; Seifert M; Hellström C; Olofsson J; Andersson E; Falk AJ; Bergström S; Hultin E; Pin E; Pimenoff V; Hassan S; Månberg A; Nilsson P; Hedhammar M; Hober S; Mattsson J; Mühr LSA; Lundgren KC
• Article: BRITISH JOURNAL OF CANCER. 2020;123(12):1825-1832

  Antibiotic use and risk of colorectal cancer: a systematic review and dose-response meta-analysis

  Simin J; Fornes R; Liu Q; Olsen RS; Callens S; Engstrand L; Brusselaers N
• Review: JOURNAL OF DRUG TARGETING. 2020;28(10):1018-1033

  Immunotargeting and therapy of cancer by advanced multivalence antibody scaffolds

  Kafil V; Saei AA; Tohidkia MR; Barar J; Omidi Y
• Published conference paper: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2020;86(24):e02085-e02020

  The Intriguing Interaction of Escherichia coli with the Host Environment and Innovative Strategies To Interfere with Colonization: a Summary of the 2019 E. coli and the Mucosal Immune System Meeting

  Cox E; Aloulou M; Fleckenstein JM; Schaeffer C; Sjoling A; Schuller S; Hanevik K; Devriendt B; Zhang W; Svennerholm A-M; Dudley EG
• Article: REPRODUCTIVE BIOLOGY AND ENDOCRINOLOGY. 2020;18(1):117

  Insulin regulation of solute carrier family 2 member 1 (glucose transporter 1) expression and glucose uptake in decidualizing human endometrial stromal cells: an in vitro study

  Jakson I; Ujvari D; Gidlof SB; Hirschberg AL
• Article: MSPHERE. 2020;5(6):e00448-e00420

  Assessment of In Vitro and In Silico Protocols for Sequence-Based Characterization of the Human Vaginal Microbiome

  Hugerth LW; Pereira M; Zha Y; Seifert M; Kaldhusdal V; Boulund F; Krog MC; Bashir Z; Hamsten M; Fransson E; Nielsen HS; Schuppe-Koistinen I; Engstrand L
• Preprint: PREPRINTS.ORG. 2020

  Molecular Epidemiology of Enteroaggregative Escherichia coli (EAEC) Isolates of Hospitalized Children from Bolivia Reveal High Heterogeneity and Multidrug-Resistance

  Joffre E; Iñiguez V
• Preprint: BIORXIV. 2020

  Multiomics and digital monitoring during lifestyle changes reveal independent dimensions of human biology and health

  Marabita F; James T; Karhu A; Virtanen H; Kettunen K; Stenlund H; Boulund F; Hellström C; Neiman M; Mills R; Perheentupa T; Laivuori H; Helkkula P; Byrne M; Jokinen I; Honko H; Kallonen A; Ermes M; Similä H; Lindholm M; Widen E; Ripatti S; Perälä-Heape M; Engstrand L; Nilsson P; Moritz T; Miettinen T; Sallinen R; Kallioniemi O
• Article: JOURNAL OF PROTEOME RESEARCH. 2020;19(11):4364-4373

  COVID-19: Nanomedicine Uncovers Blood-Clot Mystery

  Saei AA; Sharifi S; Mahmoudi M
• Article: NPJ BIOFILMS AND MICROBIOMES. 2020;6(1):39

  Vaginal microbiota and human papillomavirus infection among young Swedish women

  Cheng L; Norenhag J; Hu YOO; Brusselaers N; Fransson E; Ahrlund-Richter A; Gudnadottir U; Angelidou P; Zha Y; Hamsten M; Schuppe-Koistinen I; Olovsson M; Engstrand L; Du J
• Review: PHARMACOLOGICAL RESEARCH. 2020;160:105072

  Antibiotic use and the risk of breast cancer: A systematic review and dose-response meta-analysis

  Simin J; Tamimi RM; Engstrand L; Callens S; Brusselaers N
• Article: BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY. 2020;127(11):1382-1390

  Severe obstetric lacerations associated with postpartum depression among women with low resilience - a Swedish birth cohort study

  Asif S; Mulic-Lutvica A; Axfors C; Eckerdal P; Iliadis SI; Fransson E; Skalkidou A
• Article: ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS. 2020;51:102043

  DNA metabarcoding reveals microbial community dynamics in a microalgae-based municipal wastewater treatment open photobioreactor

  Ferro L; Hu YOO; Gentili FG; Andersson AF; Funk C
• Article: SCIENTIFIC REPORTS. 2020;10(1):14977

  Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

  Vaga S; Lee S; Ji B; Andreasson A; Talley NJ; Agreus L; Bidkhori G; Kovatcheva-Datchary P; Park J; Lee D; Proctor G; Ehrlich SD; Nielsen J; Engstrand L; Shoaie S
• Article: NATURE COMMUNICATIONS. 2020;11(1):4487

  Integration of molecular profiles in a longitudinal wellness profiling cohort

  Tebani A; Gummesson A; Zhong W; Koistinen IS; Lakshmikanth T; Olsson LM; Boulund F; Neiman M; Stenlund H; Hellstrom C; Karlsson MJ; Arif M; Dodig-Crnkovic T; Mardinoglu A; Lee S; Zhang C; Chen Y; Olin A; Mikes J; Danielsson H; von Feilitzen K; Jansson P-A; Angeras O; Huss M; Kjellqvist S; Odeberg J; Edfors F; Tremaroli V; Forsstrom B; Schwenk JM; Nilsson P; Moritz T; Backhed F; Engstrand L; Brodin P; Bergstrom G; Uhlen M; Fagerberg L
• Article: COMMUNICATIONS BIOLOGY. 2020;3(1):485

  Genome sequence of segmented filamentous bacteria present in the human intestine

  Jonsson H; Hugerth LW; Sundh J; Lundin E; Andersson AF
• Journal article: ACTA BIOCHIMICA POLONICA. 2020;67(3):303-308

  Influence of the reporter vector backbone on 2-deoxyglucose dependent promoter activation

  Solecka A; Wielento A; Jurczak J; Sowinska W; Wawro M; Kasza A
• Review: REPRODUCTIVE BIOMEDICINE ONLINE. 2020;41(3):443-453

  The reproductive microbiome - clinical practice recommendations for fertility specialists

  Garcia-Velasco JA; Budding D; Campe H; Malfertheiner SF; Hamamah S; Santjohanser C; Schuppe-Koistinen I; Nielsen HS; Vieira-Silva S; Laven J
• Article: JOURNAL OF AFFECTIVE DISORDERS. 2020;273:542-551

  Maternal perinatal depressive symptoms trajectories and impact on toddler behavior ? the importance of symptom duration and maternal bonding

  Fransson E; Sorensen F; Kallak TK; Ramklint M; Eckerdal P; Heimgartner M; Krageloh-Mann I; Skalkidou A
• Article: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2020;99(8):1014-1021

  Risk factors for poor neonatal outcome in pregnancies with decreased fetal movements

  Sterpu I; Pilo C; Koistinen IS; Lindqvist PG; Gemzell-Danielsson K; Itzel EW
• Article: BREAST CANCER RESEARCH. 2020;22(1):80

  Identification and targeting of selective vulnerability rendered by tamoxifen resistance

  Singh M; Zhou X; Chen X; Santos GS; Peuget S; Cheng Q; Rihani A; Arner ESJ; Hartman J; Selivanova G
• Article: MICROORGANISMS. 2020;8(8):E1122-1122

  Fecal Pollution Drives Antibiotic Resistance and Class 1 Integron Abundance in Aquatic Environments of the Bolivian Andes Impacted by Mining and Wastewater

  Agramont J; Gutierrez-Cortez S; Joffre E; Sjoling A; Toledo CC
• Review: VACCINES. 2020;8(3):E391-391

  Human Papillomavirus Vaccines: An Updated Review

  Cheng L; Wang Y; Du J
• Preprint: BIORXIV. 2020

  Long-read-sequenced reference genomes of the seven major lineages of enterotoxigenic Escherichia coli (ETEC) circulating in modern time

  von Mentzer A; Blackwell GA; Pickard D; Boinett CJ; Joffré E; Page AJ; Svennerholm A-M; Dougan G; Sjöling Å
• Article: MSYSTEMS. 2020;5(4):e00065-e00020

  Subspecies Niche Specialization in the Oral Microbiome Is Associated with Nasopharyngeal Carcinoma Risk

  Debelius JW; Huang T; Cai Y; Ploner A; Barrett D; Zhou X; Xiao X; Li Y; Liao J; Zheng Y; Huang G; Adami H-O; Zeng Y; Zhang Z; Ye W
• Article: INTERNATIONAL JOURNAL OF CANCER. 2020;147(1):33-44

  Menopausal hormone therapy treatment options and ovarian cancer risk: A Swedish prospective population-based matched-cohort study

  Simin J; Tamimi RM; Callens S; Engstrand L; Brusselaers N
• Article: EBIOMEDICINE. 2020;57:102854

  Facets of individual-specific health signatures determined from longitudinal plasma proteome profiling

  Dodig-Crnkovic T; Hong M-G; Thomas CE; Haussler RS; Bendes A; Dale M; Edfors F; Forsstrom B; Magnusson PKE; Schuppe-Koistinen I; Odeberg J; Fagerberg L; Gummesson A; Bergstrom G; Uhlen M; Schwenk JM
• Article: JOURNAL OF NEUROSCIENCE RESEARCH. 2020;98(7):1268-1282

  Characteristics of women with different perinatal depression trajectories

  Wikman A; Axfors C; Iliadis SI; Cox J; Fransson E; Skalkidou A
• Article: JOURNAL OF NEUROSCIENCE RESEARCH. 2020;98(7):1309-1321

  Inflammatory markers in women with postpartum depressive symptoms

  Brann E; Fransson E; White RA; Papadopoulos FC; Edvinsson A; Kamali-Moghaddam M; Cunningham JL; Sundstrom-Poromaa I; Skalkidou A
• Review: ONCOIMMUNOLOGY. 2020;9(1):1774298

  Trial watch : the gut microbiota as a tool to boost the clinical efficacy of anticancer immunotherapy

  Daillere R; Derosa L; Bonvalet M; Segata N; Routy B; Gariboldi M; Budinska E; De Vries IJM; Naccarati AG; Zitvogel V; Caldas C; Engstrand L; Loilbl S; Fieschi J; Heinzerling L; Kroemer G; Zitvogel L
• Letter: GUT. 2020;69(6):1149-1150

  Reply to: Helicobacter pylori eradication treatment and the risk of gastric adenocarcinoma in a western population

  Doorakkers E; Lagergren J; Engstrand L; Brusselaers N
• Article: HELICOBACTER. 2020;25(3):e12688

  Helicobacter pylori eradication treatment and the risk of Barrett's esophagus and esophageal adenocarcinoma

  Doorakkers E; Lagergren J; Santoni G; Engstrand L; Brusselaers N
• Article: GUT. 2020;69(6):1076-1084

  No distinct microbiome signature of irritable bowel syndrome found in a Swedish random population

  Hugerth LW; Andreasson A; Talley NJ; Forsberg AM; Kjellstrom L; Schmidt PT; Agreus L; Engstrand L
• Journal article: FRONTIERS IN ECOLOGY AND EVOLUTION. 2020;8:152

  Different Roles of Environmental Selection, Dispersal, and Drift in the Assembly of Intestinal Microbial Communities of Freshwater Fish With and Without a Stomach

  Zha Y; Lindström ES; Eiler A; Svanbäck R
• Preprint: BIORXIV. 2020

  Optimal protocols for sequence-based characterization of the human vaginal microbiome

  Hugerth LW; Pereira M; Zha Y; Seifert M; Kaldhusdal V; Boulund F; Krog MC; Bashir Z; Hamsten M; Fransson E; Svarre-Nielsen H; Schuppe-Koistinen I; Engstrand L
• Article: REDOX BIOLOGY. 2020;32:101491

  Comprehensive chemical proteomics for target deconvolution of the redox active drug auranofin

  Saei AA; Gullberg H; Sabatier P; Beusch CM; Johansson K; Lundgren B; Arvidsson PI; Arner ESJ; Zubarev RA
• Doctoral thesis: 2020

  Epithelial barrier protection : implications for HIV susceptibility

  Edfeldt G
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2020;21(7):E2619-2619

  The Significance of MicroRNAs Expression in Regulation of Extracellular Matrix and Other Drug Resistant Genes in Drug Resistant Ovarian Cancer Cell Lines.

  Kazmierczak D; Jopek K; Sterzynska K; Ginter-Matuszewska B; Nowicki M; Rucinski M; Januchowski R
• Article: SSM-POPULATION HEALTH. 2020;10:100511

  Child living arrangements following separation and mental health of parents in Sweden

  Fritzell S; Gahler M; Fransson E
• Article: JOURNAL OF GASTROENTEROLOGY. 2020;55(4):453-461

  Long-term proton pump inhibitor usage and the association with pancreatic cancer in Sweden

  Brusselaers N; Sadr-Azodi O; Engstrand L
• Article: CANCER RESEARCH. 2020;80(7):1538-1550

  Thermal Proteome Profiling Identifies Oxidative-Dependent Inhibition of the Transcription of Major Oncogenes as a New Therapeutic Mechanism for Select Anticancer Compounds

  Peuget S; Zhu J; Sanz G; Singh M; Gaetani M; Chen X; Shi Y; Saei AA; Visnes T; Lindstrom MS; Rihani A; Moyano-Galceran L; Carlson JW; Hjerpe E; Joneborg U; Lehti K; Hartman J; Helleday T; Zubarev R; Selivanova G
• Preprint: BIORXIV. 2020

  Antibiotic resistance genes and class 1 integron: Evidence of fecal pollution as a major driver for their abundance in water and sediments impacted by metal contamination and wastewater in the Andean region of Bolivia

  Agramont J; Gutierrez-Cortez S; Joffré E; Sjöling Å; Toledo CC
• Letter: GASTROENTEROLOGY. 2020;158(4):1172-1173

  Safety of Proton Pump Inhibitors Questioned Based on a Large Randomized Trial of Patients Receiving Rivaroxaban or Aspirin

  Simin J; Liu Q; Fornes R; Brusselaers N
• Article: JOURNAL OF CELLULAR AND MOLECULAR MEDICINE. 2020;24(5):3242-3245

  Dihydrotestosterone potentiates insulin to up-regulate prokineticin-1 in decidualizing human endometrial stromal cells

  Ujvari D; Brugalla CG; Hirschberg AL
• Review: DIGESTIVE DISEASES AND SCIENCES. 2020;65(3):865-873

  Microbiome and Gastric Cancer

  Engstrand L; Graham DY
• Article: CARDIOVASCULAR RESEARCH. 2020;116(3):619-632

  Maternal androgen excess induces cardiac hypertrophy and left ventricular dysfunction in female mice offspring

  Manti M; Fornes R; Pironti G; Haworth SM; Zhengbing Z; Benrick A; Carlstrom M; Andersson D; Stener-Victorin E
• Article: MOLECULAR & CELLULAR PROTEOMICS. 2020;19(3):518-528

  Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping

  Karlsson R; Thorsell A; Gomila M; Salva-Serra F; Jakobsson HE; Gonzales-Siles L; Jaen-Luchoro D; Skovbjerg S; Fuchs J; Karlsson A; Boulund F; Johnning A; Kristiansson E; Moore ERB
• Review: JOURNAL OF INTERNAL MEDICINE. 2020;287(2):134-152

  A global epidemic increase of an HPV-induced tonsil and tongue base cancer - potential benefit from a pan-gender use of HPV vaccine

  Nasman A; Du J; Dalianis T
• Review: ALIMENTARY PHARMACOLOGY & THERAPEUTICS. 2020;51(4):410-420

  Systematic review with meta-analysis: the risks of proton pump inhibitors during pregnancy

  Li CM; Zhernakova A; Engstrand L; Wijmenga C; Brusselaers N
• Article: SCIENTIFIC REPORTS. 2020;10(1):593

  Evidence of altered mucosa-associated and fecal microbiota composition in patients with Irritable Bowel Syndrome

  Sundin J; Aziz I; Nordlander S; Polster A; Hu YOO; Hugerth LW; Pennhag AAL; Engstrand L; Tornblom H; Simren M; Ohman L
• Article: FRONTIERS IN MICROBIOLOGY. 2020;11:26

  Nitrate Metabolism Modulates Biosynthesis of Biofilm Components in Uropathogenic Escherichia coli and Acts as a Fitness Factor During Experimental Urinary Tract Infection

  Martin-Rodriguez AJ; Rhen M; Melican K; Richter-Dahlfors A
• Article: IMMUNOLOGY. 2020;159(1):96-108

  Tailoring subtractive cell biopanning to identify diffuse gastric adenocarcinoma-associated antigens via human scFv antibodies

  Mehdipour T; Tohidkia MR; Saei AA; Kazemi A; Khajeh S; Rahimi AAR; Nikfarjam S; Farhadi M; Halimi M; Soleimani R; Zubarev RA; Nouri M
• Review: BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY. 2020;127(2):171-180

  The vaginal microbiota, human papillomavirus and cervical dysplasia: a systematic review and network meta-analysis

  Norenhag J; Du J; Olovsson M; Verstraelen H; Engstrand L; Brusselaers N
• Review: ADVANCES IN AGGREGATION INDUCED EMISSION MATERIALS IN BIOSENSING AND IMAGING FOR BIOMEDICAL APPLICATIONS, PT A. 2020;176:141-178

  Bioinformatics and machine learning in gastrointestinal microbiome research and clinical application

  Hopson LM; Singleton SS; David JA; Basuchoudhary A; Prast-Nielsen S; Klein P; Sen S; Mazumder R
• Article: LARYNGOSCOPE. 2020;130(1):E21-E29

  Mesenchymal Stromal Cells Modulate Tissue Repair Responses Within the Injured Vocal Fold

  Nagubothu SR; Sugars RV; Tudzarovski N; Andren AT; Bottai M; Davies LC; Hertegard S; Le Blanc K
• Article: WATER. 2020;12(1):3

  Molecular Analyses of Fecal Bacteria and Hydrodynamic Modeling for Microbial Risk Assessment of a Drinking Water Source

  Chuquimia OD; Bergion V; Guzman-Otazo J; Soren K; Rosen L; Pettersson TJR; Sokolova E; Sjoling A
• Preprint: SSRN ELECTRONIC JOURNAL. 2020

  Antibiotic Use and Risk of Colorectal Cancer: A Systematic Review and Dose-Response Meta-Analysis

  Simin J; Fornes R; Liu Q; Olsen RS; Callens S; Engstrand L; Brusselaers N
• Book chapter: RECENT DEVELOPMENTS IN MULTIVARIATE AND RANDOM MATRIX ANALYSIS. 2020;p. 287-311

  Detection of Sparse and Weak Effects in High-Dimensional Feature Space, with an Application to Microbiome Data Analysis

  Pavlenko T; Tillander A; Debelius J; Boulund F
• Preprint: SSRN ELECTRONIC JOURNAL. 2020

  Screening for High Amounts of SARS-CoV-2 Identifies Pre-Symptomatic Subjects Among Healthy Healthcare Workers

  Dillner J; Elfström KM; Blomqvist J; Engstrand L; Uhlen M; Eklund C; Boulund F; Lagheden C; Hamsten M; Nordqvist-Kleppe S; Seifert M; Hellström C; Olofsson J; Andersson E; Falk AJ; Bergström S; Hultin E; Pin E; Pimenoff VN; Hassan S; Månberg A; Nilsson P; Hedhammar M; Hober S; Mattsson J; Mühr LSA; Conneryd Lundgren K
• Preprint: SSRN ELECTRONIC JOURNAL. 2020

  Antibiotic Use and Breast Cancer Risk: A Systematic Review and Dose-Response Meta-Analysis

  Simin J; Tamimi RM; Engstrand L; Callens S; Brusselaers N
• Article: NATURE COMMUNICATIONS. 2019;10(1):5715

  ProTargetMiner as a proteome signature library of anticancer molecules for functional discovery

  Saei AA; Beusch CM; Chernobrovkin A; Sabatier P; Zhang B; Tokat UG; Stergiou E; Gaetani M; Vegvari A; Zubarev RA
• Article: BMC PREGNANCY AND CHILDBIRTH. 2019;19(1):479

  The effect of antenatal depression and antidepressant treatment on placental tissue: a protein-validated gene expression study

  Edvinsson A; Hellgren C; Kallak TK; Akerud H; Skalkidou A; Stener-Victorin E; Fornes R; Spigset O; Lager S; Olivier J; Sundstrom-Poromaa I
• Article: SCIENTIFIC REPORTS. 2019;9(1):18120

  Impact of Q-Griffithsin anti-HIV microbicide gel in non-human primates: In situ analyses of epithelial and immune cell markers in rectal mucosa

  Gunaydin G; Edfeldt G; Garber DA; Asghar M; Noel-Romas L; Burgener A; Wahlby C; Wang L; Rohan LC; Guenthner P; Mitchell J; Matoba N; McNicholl JM; Palmer KE; Tjernlund A; Broliden K
• Article: NATURE MEDICINE. 2019;25(12):1894-1904

  Prenatal androgen exposure and transgenerational susceptibility to polycystic ovary syndrome

  Risal S; Pei Y; Lu H; Manti M; Fornes R; Pui H-P; Zhao Z; Massart J; Ohlsson C; Lindgren E; Crisosto N; Maliqueo M; Echiburu B; de Guevara AL; Sir-Petermann T; Larsson H; Rosenqvist MA; Cesta CE; Benrick A; Deng Q; Stener-Victorin E
• Article: GUT. 2019;68(12):2186-2194

  Enrichment of oral microbiota in early cystic precursors to invasive pancreatic cancer

  Gaiser RA; Halimi A; Alkharaan H; Lu L; Davanian H; Healy K; Hugerth LW; Ateeb Z; Valente R; Moro CF; Del Chiaro M; Chen MS
• Article: SCIENTIFIC REPORTS. 2019;9(1):17287

  Effects of sampling strategy and DNA extraction on human skin microbiome investigations

  Bjerre RD; Hugerth LW; Boulund F; Seifert M; Johansen JD; Engstrand L
• Review: WORLD JOURNAL OF GASTROENTEROLOGY. 2019;25(42):6289-6298

  Helicobacter pylori in ancient human remains

  Maixner F; Thorell K; Granehall L; Linz B; Moodley Y; Rattei T; Engstrand L; Zink A
• Article: CELL HOST & MICROBE. 2019;26(5):666-679.e7

  The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

  Tett A; Huang KD; Asnicar F; Fehlner-Peach H; Pasolli E; Karcher N; Armanini F; Manghi P; Bonham K; Zolfo M; De Filippis F; Magnabosco C; Bonneau R; Lusingu J; Amuasi J; Reinhard K; Rattei T; Boulund F; Engstrand L; Zink A; Carmen Collado M; Littman DR; Eibach D; Ercolini D; Rota-Stabelli O; Huttenhower C; Maixner F; Segata N
• Article: BMC PULMONARY MEDICINE. 2019;19(1):211

  Longitudinal profiling of gut microbiome among tuberculosis patients under anti-tuberculosis treatment in China: protocol of a prospective cohort study

  Shi W; Hu Y; Zheng X; Ning Z; Wu M; Xia F; Prast-Nielsen S; Hu YOO; Xu B
• Article: INTERNATIONAL JOURNAL OF OBESITY. 2019;43(11):2176-2188

  Mice exposed to maternal androgen excess and diet-induced obesity have altered phosphorylation of catechol-O-methyltransferase in the placenta and fetal liver

  Fornes R; Manti M; Qi X; Vorontsov E; Sihlbom C; Nystrom J; Jerlhag E; Maliqueo M; Hirschberg AL; Carlstrom M; Benrick A; Stener-Victorin E
• Article: JOURNAL OF PROTEOME RESEARCH. 2019;18(11):4027-4037

  Proteome Integral Solubility Alteration: A High-Throughput Proteomics Assay for Target Deconvolution

  Gaetani M; Sabatier P; Saei AA; Beusch CM; Yang Z; Lundstrom SL; Zubarev RA
• Article: JOURNAL OF BACTERIOLOGY. 2019;201(21):e00272-e00219

  Isolates from Colonic Spirochetosis in Humans Show High Genomic Divergence and Potential Pathogenic Features but Are Not Detected Using Standard Primers for the Human Microbiota

  Thorell K; Inganas L; Backhans A; Agreus L; Ost A; Walker MM; Talley NJ; Kjellstrom L; Andreasson A; Engstrand L
• Article: SCIENTIFIC REPORTS. 2019;9(1):15328

  Spring peaks and autumn troughs identified in peripheral inflammatory markers during the peripartum period

  Henriksson HE; White RA; Iliadis SI; Fransson E; Papadopoulos FC; Sundstrom-Poromaa I; Skalkidou A
• Preprint: BIORXIV. 2019

  Liver X Receptor regulates Th17 and RORγt⁺ Treg cells by distinct mechanisms

  Parigi S; Das S; Frede A; Cardoso R; Tripathi KP; Doñas C; Hu Y; Antonson P; Engstrand L; Gustafsson J-Å; Villablanca E
• Article: BMJ OPEN. 2019;9(10):e031514

  Cohort profile: the Biology, Affect, Stress, Imaging and Cognition (BASIC) study on perinatal depression in a population-based Swedish cohort

  Axfors C; Brann E; Henriksson HE; Hellgren C; Kallak TK; Fransson E; Lager S; Iliadis SI; Sylven S; Papadopoulos FC; Ekselius L; Sundstrom-Poromaa I; Skalkidou A
• Article: NATURE COMMUNICATIONS. 2019;10(1):4703

  Microbe-host interplay in atopic dermatitis and psoriasis

  Fyhrquist N; Muirhead G; Prast-Nielsen S; Jeanmougin M; Olah P; Skoog T; Jules-Clement G; Feld M; Barrientos-Somarribas M; Sinkko H; van den Bogaard EH; Zeeuwen PLJM; Rikken G; Schalkwijk J; Niehues H; Daeubener W; Eller SK; Alexander H; Pennino D; Suomela S; Tessas I; Lybeck E; Baran AM; Darban H; Gangwar RS; Gerstel U; Jahn K; Karisola P; Yan L; Hansmann B; Katayama S; Meller S; Bylesjo M; Hupe P; Levi-Schaffer F; Greco D; Ranki A; Schroeder JM; Barker J; Kere J; Tsoka S; Lauerma A; Soumelis V; Nestle FO; Homeyl B; Andersson B; Alenius H
• Preprint: BIORXIV. 2019

  Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

  Vaga S; Lee S; Ji B; Andreasson A; Talley N; Agréus L; Bidkhori G; Kovatcheva-Datchary P; Park J; Lee D; Proctor G; Ehrlich D; Nielsen J; Engstrand L; Shoaie S
• Article: CANCER EPIDEMIOLOGY. 2019;62:101585

  Duration of use of proton pump inhibitors and the risk of gastric and oesophageal cancer

  Brusselaers N; Lagergren J; Engstrand L
• Letter: GUT. 2019;68(9):1723-1725

  A widely used sampling device in colorectal cancer screening programmes allows for large-scale microbiome studies

  Gudra D; Shoaie S; Fridmanis D; Klovins J; Wefer H; Silamikelis I; Peculis R; Kalnina I; Elbere I; Radovica-Spalvina I; Hultcrantz R; Skenders G; Leja M; Engstrand L
• Article: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 2019;63(9):e00823-e00819

  Repeated Isolation of Extended-Spectrum-β-Lactamase-Positive Escherichia coli Sequence Types 648 and 131 from Community Wastewater Indicates that Sewage Systems Are Important Sources of Emerging Clones of Antibiotic-Resistant Bacteria

  Paulshus E; Thorell K; Guzman-Otazo J; Joffre E; Colque P; Kuhn I; Mollby R; Sorum H; Sjoling A
• Article: BRITISH JOURNAL OF DERMATOLOGY. 2019;181(3):572-579

  Investigation of the skin microbiome: swabs vs. biopsies

  Prast-Nielsen S; Tobin A-M; Adamzik K; Powles A; Hugerth LW; Sweeney C; Kirby B; Engstrand L; Fry L
• Journal article: BRITISH JOURNAL OF DERMATOLOGY. 2019;181(3):e72

  Investigation of the skin microbiome

  Prast‐Nielsen S; Tobin A; Adamzik K; Powles A; Hugerth LW; Sweeney C; Kirby B; Engstrand L; Fry L
• Journal article: BRITISH JOURNAL OF DERMATOLOGY. 2019;181(3):e84

  皮肤微生物组检查

  Prast‐Nielsen S; Tobin A; Adamzik K; Powles A; Hugerth LW; Sweeney C; Kirby B; Engstrand L; Fry L
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2019;20(16):3927

  Expression of Osteoblast-Specific Factor 2 (OSF-2, Periostin) Is Associated with Drug Resistance in Ovarian Cancer Cell Lines.

  Sterzyńska K; Kaźmierczak D; Klejewski A; Świerczewska M; Wojtowicz K; Nowacka M; Brązert J; Nowicki M; Januchowski R
• Review: MEDICAL SCIENCES. 2019;7(8):E86-86

  Origins and Impact of Psychological Traits in Polycystic Ovary Syndrome.

  Stener-Victorin E; Manti M; Fornes R; Risal S; Lu H; Benrick A
• Review: DNA REPAIR. 2019;80:8-15

  Crosstalk between P53 and DNA damage response in ageing

  Mohammadzadeh A; Mirza-Aghazadeh-Attari M; Hallaj S; Saei AA; Alivand MR; Valizadeh A; Yousefi B; Majidinia M
• Review: DNA REPAIR. 2019;80:59-84

  DNA damage response and repair in ovarian cancer: Potential targets for therapeutic strategies

  Mirza-Aghazadeh-Attari M; Ostadian C; Saei AA; Mihanfar A; Darband SG; Sadighparvar S; Kaviani M; Kafil HS; Yousefi B; Majidinia M
• Article: UNITED EUROPEAN GASTROENTEROLOGY JOURNAL. 2019;7(7):897-907

  Composition of the mucosa-associated microbiota along the entire gastrointestinal tract of human individuals

  Vuik FER; Dicksved J; Lam SY; Fuhler GM; van der Laan LJW; van de Winkel A; Konstantinov SR; Spaander MCW; Peppelenbosch MP; Engstrand L; Kuipers EJ
• Article: BIOCHIMIE. 2019;162:46-54

  Repurposing of auranofin: Thioredoxin reductase remains a primary target of the drug

  Zhang X; Selvaraju K; Saei AA; D'Arcy P; Zubarev RA; Arner ESJ; Linder S
• Article: CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY. 2019;10(7):e00065

  The Gut Microbiota in Collagenous Colitis Shares Characteristics With Inflammatory Bowel Disease-Associated Dysbiosis

  Carstens A; Dicksved J; Nelson R; Lindqvist M; Andreasson A; Bohr J; Tysk C; Talley NJ; Agreus L; Engstrand L; Halfvarson J
• Article: INTERNATIONAL JOURNAL OF CANCER. 2019;144(12):3086-3098

  Colitis-induced colorectal cancer and intestinal epithelial estrogen receptor beta impact gut microbiota diversity

  Ibrahim A; Hugerth LW; Hases L; Saxena A; Seifert M; Thomas Q; Gustafsson J-A; Engstrand L; Williams C
• Article: OXIDATIVE MEDICINE AND CELLULAR LONGEVITY. 2019;2019:1659468-11

  Oxidative Stress Induced by the Deubiquitinase Inhibitor b-AP15 Is Associated with Mitochondrial Impairment

  Zhang X; Espinosa B; Saei AA; D'Arcy P; Zubarev RA; Linder S
• Review: EBIOMEDICINE. 2019;44:741-746

  The gut microbiome and epilepsy

  Dahlin M; Prast-Nielsen S
• Article: INTERNATIONAL JOURNAL OF ORAL SCIENCE. 2019;11(2):16

  Mucosal-associated invariant T cells and oral microbiome in persistent apical periodontitis

  Davanian H; Gaiser RA; Silfverberg M; Hugerthz LW; Sobkowiak MJ; Lu L; Healy K; Sandberg JK; Nasman P; Karlsson J; Jansson L; EngstrancP L; Chen MS
• Article: JOURNAL OF CLINICAL MEDICINE. 2019;8(5):E630-630

  Periodontal Health and Oral Microbiota in Patients with Rheumatoid Arthritis

  Eriksson K; Fei G; Lundmark A; Benchimol D; Lee L; Hu YOO; Kats A; Saevarsdottir S; Catrina AI; Klinge B; Andersson AF; Klareskog L; Lundberg K; Jansson L; Yucel-Lindberg T
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2019;54(5):577-585

  Alterations in the relative abundance of Faecalibacterium prausnitzii correlate with changes in fecal calprotectin in patients with ileal Crohn's disease: a longitudinal study

  Bjorkqvist O; Repsilber D; Seifert M; Brislawn C; Jansson J; Engstrand L; Rangel I; Halfvarson J
• Editorial comment: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2019;98(5):672-677

  Cellular therapies for the endometrium: An update

  Queckborner S; Davies LC; von Grothusen C; Santamaria X; Simon C; Gemzell-Danielsson K
• Article: CANCER LETTERS. 2019;448:70-83

  Proteasome inhibitor b-AP15 induces enhanced proteotoxicity by inhibiting cytoprotective aggresome formation

  Hillert E-K; Brnjic S; Zhang X; Mazurkiewicz M; Saei AA; Mofers A; Selvaraj K; Zubarev R; Linder S; D'Arcy P
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2019;20(8):E2053-2053

  PTPRK Expression Is Downregulated in Drug Resistant Ovarian Cancer Cell Lines, and Especially in ALDH1A1 Positive CSCs-Like Populations.

  Świerczewska M; Sterzyńska K; Wojtowicz K; Kaźmierczak D; Iżycki D; Nowicki M; Zabel M; Januchowski R
• Preprint: BIORXIV. 2019

  The Prevotella copri complex comprises four distinct clades that are underrepresented in Westernised populations

  Tett A; Huang KD; Asnicar F; Fehlner-Peach H; Pasolli E; Karcher N; Armanini F; Manghi P; Bonham K; Zolfo M; De Filippis F; Magnabosco C; Bonneau R; Lusingu J; Amuasi J; Reinhard K; Rattei T; Boulund F; Engstrand L; Zink A; Collado MC; Littman DR; Eibach D; Ercolini D; Rota-Stabelli O; Huttenhower C; Maixner F; Segata N
• Article: MICROBIOME. 2019;7(1):52

  Identification and reconstruction of novel antibiotic resistance genes from metagenomes

  Berglund F; Osterlund T; Boulund F; Marathe NP; Larsson DGJ; Kristiansson E
• Article: ECOLOGY AND EVOLUTION. 2019;9(6):3405-3415

  Asymmetrical habitat coupling of an aquatic predator-The importance of individual specialization.

  Marklund MHK; Svanbäck R; Faulks L; Breed MF; Scharnweber K; Zha Y; Eklöv P
• Article: SCANDINAVIAN JOURNAL OF PUBLIC HEALTH. 2019;47(2):137-145

  Children with two homes: Psychological problems in relation to living arrangements in Nordic 2-to 9-year-olds

  Bergstrom M; Fransson E; Wells MB; Kohler L; Hjern A
• Article: AIDS RESEARCH AND HUMAN RETROVIRUSES. 2019;35(3):236-246

  Increased Cervical CD4⁺CCR5⁺ T Cells Among Kenyan Sex Working Women Using Depot Medroxyprogesterone Acetate

  Lajoie J; Tjernlund A; Omollo K; Edfeldt G; Rohl M; Boily-Larouche G; Cheruiyot J; Kimani M; Kimani J; Oyugi J; Broliden K; Fowke KR
• Article: SCIENTIFIC REPORTS. 2019;9(1):2150

  Cost-effective and robust genotyping using double-mismatch allele-specific quantitative PCR

  Lefever S; Rihani A; Van der Meulen J; Pattyn F; Van Maerken T; Van Dorpe J; Hellemans J; Vandesompele J
• Preprint: BIORXIV. 2019

  Isolates from colonic spirochaetosis in humans show high genomic divergence and carry potential pathogenic features but are not detected by 16S amplicon sequencing using standard primers for the human microbiota

  Thorell K; Inganäs L; Backhans A; Agréus L; Öst Å; Walker M; Talley NJ; Kjellström L; Andreasson A; Engstrand L
• Doctoral thesis: 2019

  Molecular mechanisms and targets of new anticancer treatments

  Dibavar AS
• Article: HEPATOLOGY. 2019;69(2):760-773

  Candidate biomarkers for the diagnosis and prognosis of drug-induced liver injury: An international collaborative effort

  Church RJ; Kullak-Ublick GA; Aubrecht J; Bonkovsky HL; Chalasani N; Fontana RJ; Goepfert JC; Hackman F; King NMP; Kirby S; Kirby P; Marcinak J; Ormarsdottir S; Schomaker SJ; Schuppe-Koistinen I; Wolenski F; Arber N; Merz M; Sauer J-M; Andrade RJ; van Boemmel F; Poynard T; Watkins PB
• Article: SCIENTIFIC REPORTS. 2019;9(1):108

  The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli

  Joffre E; Nicklasson M; Alvarez-Carretero S; Xiao X; Sun L; Nookaew I; Zhu B; Sjoling A
• Article: AUTOIMMUNITY. 2019;52(1):1-11

  Individual and stable autoantibody repertoires in healthy individuals

  Neiman M; Hellstrom C; Just D; Mattsson C; Fagerberg L; Schuppe-Koistinen I; Gummesson A; Bergstrom G; Kallioniemi O; Achour A; Sallinen R; Uhlen M; Nilsson P
• Article: FRONTIERS IN PHYSIOLOGY. 2019;10:730

  Influence of Hyperoxic-Supplemented High-Intensity Interval Training on Hemotological and Muscle Mitochondrial Adaptations in Trained Cyclists

  Cardinale DA; Larsen FJ; Lannerstrom J; Manselini T; Sodergard O; Mijwel S; Lindholm P; Ekblom B; Boushel R
• Article: FRONTIERS IN MICROBIOLOGY. 2019;10:1861

  Whole-Genome Sequencing Redefines Shewanella Taxonomy

  Thorell K; Meier-Kolthoff JP; Sjoling A; Martin-Rodriguez AJ
• Article: CHILD AND ADOLESCENT PSYCHIATRY AND MENTAL HEALTH. 2019;13:9

  Clinicians' attitudes toward standardized assessment and diagnosis within child and adolescent psychiatry

  Danielson M; Mansdotter A; Fransson E; Dalsgaard S; Larsson J-O
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2019;9:216

  Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis

  Lundmark A; Hu YOO; Huss M; Johannsen G; Andersson AF; Yucel-Lindberg T
• Article: PLOS ONE. 2019;14(4):e0214913

  "We also communicate through a book in the diaper bag"-Separated parents' ways to coparent and promote adaptation of their 1-4 year olds in equal joint physical custody

  Bergstrom M; Sarkadi A; Hjern A; Fransson E
• Article: NPJ BIOFILMS AND MICROBIOMES. 2019;5(1):5

  The ketogenic diet influences taxonomic and functional composition of the gut microbiota in children with severe epilepsy

  Lindefeldt M; Eng A; Darban H; Bjerkner A; Zetterstrom CK; Allander T; Andersson B; Borenstein E; Dahlin M; Prast-Nielsen S
• Article: VIRULENCE. 2019;10(1):97-117

  Interleukin 4 induces rapid mucin transport, increases mucus thickness and quality and decreases colitis and Citrobacter rodentium in contact with epithelial cells

  Sharba S; Navabi N; Padra M; Persson JA; Quintana-Hayashi MP; Gustafsson JK; Szeponik L; Venkatakrishnan V; Sjoling A; Nilsson S; Quiding-Jarbrink M; Johansson MEV; Linden SK
• Article: PLOS ONE. 2019;14(1):e0210735

  Diarrheal bacterial pathogens and multi-resistant enterobacteria in the Choqueyapu River in La Paz, Bolivia

  Guzman-Otazo J; Gonzales-Siles L; Poma V; Bengtsson-Palme J; Thorell K; Flach C-F; Iniguez V; Sjoling A
• Article: FEMS MICROBIOLOGY ECOLOGY. 2019;95(1):fiy210

  Multilocus sequence typing of Shewanella algae isolates identifies disease-causing Shewanella chilikensis strain 6I4

  Martin-Rodriguez AJ; Suarez-Mesa A; Artiles-Campelo F; Romling U; Hernandez M
• Article: GENOMICS. 2019;111(1):24-33

  Comparative genomic analysis of Lactobacillus mucosae LM1 identifies potential niche-specific genes and pathways for gastrointestinal adaptation

  Valeriano VDV; Oh JK; Bagon BB; Kim H; Kang D-K
• Article: ALLERGY. 2019;74(1):176-185

  Temporal and long-term gut microbiota variation in allergic disease: A prospective study from infancy to school age

  Sjodin KS; Hammarstrom M-L; Ryden P; Sjodin A; Hernell O; Engstrand L; West CE
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2019;9:59

  Changes in Cervical Human Papillomavirus (HPV) Prevalence at a Youth Clinic in Stockholm, Sweden, a Decade After the Introduction of the HPV Vaccine

  Ahrlund-Richter A; Cheng L; Hu YOO; Svensson M; Pennhag AAL; Ursu RG; Haeggblom L; Grun N; Ramqvist T; Engstrand L; Dalianis T; Du J
• Conference publication: HELICOBACTER. 2019;24

  Study of the impact of Helicobacter pylori eradication treatments on the intestinal microbiota

  McNicholl AG; Prast-Nielsen S; Andersen LP; Machado JC; Leja M; Alarcon T; Gasbarrini A; Megraud F; O'Morain C; Engstrand L; Gisbert JP
• Book chapter: THERANOSTIC BIONANOMATERIALS. 2019;p. 55-73

  3 Nanoparticle Interaction With Immune Cells for Nanoparticle-Mediated (Anticancer) Immunotherapy

  Hydbring P; Du J
• Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2018;20(1):E54-54

  Mutual Expression of ALDH1A1, LOX, and Collagens in Ovarian Cancer Cell Lines as Combined CSCs- and ECM-Related Models of Drug Resistance Development.

  Sterzyńska K; Klejewski A; Wojtowicz K; Świerczewska M; Nowacka M; Kaźmierczak D; Andrzejewska M; Rusek D; Brązert M; Brązert J; Nowicki M; Januchowski R
• Letter: STEM CELLS AND DEVELOPMENT. 2018;27(24):1671-1673

  Author Accountability in Biomedical Research

  Caplan A; Badylak SF; Caplan AI; Davies LC; Stroemblad S; Weiss DJ; Le Blanc K
• Article: JOURNAL OF THE ENDOCRINE SOCIETY. 2018;2(12):1363-1380

  Reproductive and Behavior Dysfunction Induced by Maternal Androgen Exposure and Obesity Is Likely Not Gut Microbiome-Mediated

  Lindheim L; Manti M; Fornes R; Bashir M; Czarnewski P; Diaz OE; Seifert M; Engstrand L; Villablanca EJ; Obermayer-Pietsch B; Stener-Victorin E
• Article: GUT. 2018;67(12):2092-2096

  Helicobacter pylori eradication treatment and the risk of gastric adenocarcinoma in a Western population.

  Doorakkers E; Lagergren J; Engstrand L; Brusselaers N
• Article: JOURNAL OF DIGESTIVE DISEASES. 2018;19(12):745-752

  Differential clustering of fecal and mucosa-associated microbiota in 'healthy' individuals

  Carstens A; Roos A; Andreasson A; Magnuson A; Agreus L; Halfvarson J; Engstrand L
• Article: PROTEOMICS. 2018;18(24):e1800118

  Dynamic Proteomics Reveals High Plasticity of Cellular Proteome: Growth-Related and Drug-Induced Changes in Cancer Cells are Comparable

  Sabatier P; Saei AA; Wang S; Zubarev RA
• Article: NEW PHYTOLOGIST. 2018;220(4):1248-1261

  Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb

  Rasmussen PU; Hugerth LW; Blanchet FG; Andersson AF; Lindahl BD; Tack AJM
• Article: INFECTION AND DRUG RESISTANCE. 2018;11:2335-2344

  Which methods are appropriate for the detection of Staphylococcus argenteus and is it worthwhile to distinguish S. argenteus from S. aureus?

  Kaden R; Engstrand L; Rautelin H; Johansson C
• Article: MSYSTEMS. 2018;3(5):10.1128/msystems.00119-10.1128/msystems.00118

  Bacteriophages Synergize with the Gut Microbial Community To Combat Salmonella

  Hu YOO; Hugerth LW; Bengtsson C; Alisjahbana A; Seifert M; Kamal A; Sjoling A; Midtvedt T; Norin E; Du J; Engstrand L
• Article: BIOCHEMICAL PHARMACOLOGY. 2018;156:291-301

  The deubiquitinase inhibitor b-AP15 induces strong proteotoxic stress and Check for mitochondrial damage

  Zhang X; Pellegrini P; Saei AA; Hillert E-K; Mazurkiewicz M; Olofsson MH; Zubarev RA; D'Arcy P; Linder S
• Article: MICROBIOME. 2018;6(1):173

  Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

  Alneberg J; Karlsson CMG; Divne A-M; Bergin C; Homa F; Lindh MV; Hugerth LW; Ettema TJG; Bertilsson S; Andersson AF; Pinhassi J
• Article: IMMUNOLOGY AND CELL BIOLOGY. 2018;96(8):820-830

  Phenotypic and functional alterations of myeloid-derived suppressor cells during the disease course of multiple sclerosis

  Iacobaeus E; Douagi I; Jitschin R; Marcusson-Stahl M; Andren AT; Gavin C; Lefsihane K; Davies LC; Mougiakakos D; Kadri N; Le Blanc K
• Meeting abstract: ANNALS OF ONCOLOGY. 2018;29:vi31

  Molecular treatment stratification in second-line treatment of pancreatic adenocarcinoma: PePaCaKa-001

  Kordes M; Lohr M; Malgerud L; Kaduthanam S; Frodin J-E; Karimi M; Yachnin J; Moro CF; Ghazi S; Heuchel R; Wirta V; Huelsewig C; Stecker K; Del Chiaro M; Ostman A; Engstrand L; Brock S; Gustafsson-Liljefors M
• Article: SCIENTIFIC REPORTS. 2018;8(1):12557

  Bare surface of gold nanoparticle induces inflammation through unfolding of plasma fibrinogen

  Kharazian B; Lohse SE; Ghasemi F; Raoufi M; Saei AA; Hashemi F; Farvadi F; Alimohamadi R; Jalali SA; Shokrgozar MA; Hadipour NL; Ejtehadi MR; Mahmoudi M
• Article: SCIENTIFIC REPORTS. 2018;8(1):11907

  Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems

  Hu YOO; Ndegwa N; Alneberg J; Johansson S; Logue JB; Huss M; Kaller M; Lundeberg J; Fagerberg J; Andersson AF
• Article: BMC BIOLOGY. 2018;16(1):84

  A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

  Berthenet E; Yahara K; Thorell K; Pascoe B; Meric G; Mikhail JM; Engstrand L; Enroth H; Burette A; Megraud F; Varon C; Atherton JC; Smith S; Wilkinson TS; Hitchings MD; Falush D; Sheppard SK
• Article: FASEB JOURNAL. 2018;32(8):4158-4171

  Maternal androgen excess and obesity induce sexually dimorphic anxiety-like behavior in the offspring

  Manti M; Fornes R; Qi X; Folmerz E; Hirschberg AL; Barbosa TDC; Maliqueo M; Benrick A; Stener-Victorin E
• Article: MICROBIOLOGYOPEN. 2018;7(4):e00583

  Characterization of Swedish Campylobacter coil clade 2 and clade 3 water isolates

  Nilsson A; Skarp A; Johansson C; Kaden R; Engstrand L; Rautelin H
• Article: JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY. 2018;46:268-273

  Formulation, characterization and cytotoxicity evaluation of ketotifen-loaded nanostructured lipid carriers

  Dolatabadi JEN; Azami A; Mohammadi A; Hamishehkar H; Panahi-Azar V; Saadat YR; Saei AA
• Article: SCIENTIFIC DATA. 2018;5:180146

  BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea

  Alneberg J; Sundh J; Bennke C; Beier S; Lundin D; Hugerth LW; Pinhassi J; Kisand V; Riemann L; Juergens K; Labrenz M; Andersson AF
• Article: CURRENT BIOLOGY. 2018;28(14):2348-2355.e9

  The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals

  Maixner F; Turaev D; Cazenave-Gassiot A; Janko M; Krause-Kyora B; Hoopmann MR; Kusebauch U; Sartain M; Guerriero G; O'Sullivan N; Teasdale M; Cipollini G; Paladin A; Mattiangeli V; Samadelli M; Tecchiati U; Putzer A; Palazoglu M; Meissen J; Losch S; Rausch P; Baines JF; Kim BJ; An H-J; Gostner P; Egarter-Vigl E; Malfertheiner P; Keller A; Stark RW; Wenk M; Bishop D; Bradley DG; Fiehn O; Engstrand L; Moritz RL; Doble P; Franke A; Nebel A; Oeggl K; Rattei T; Grimm R; Zink A
• Article: JOURNAL OF INFECTIOUS DISEASES. 2018;218(3):453-465

  Human Immunodeficiency Virus-Infected Women Have High Numbers of CD103^-CD8⁺ T Cells Residing Close to the Basal Membrane of the Ectocervical Epithelium

  Gibbs A; Buggert M; Edfeldt G; Ranefall P; Introini A; Cheuk S; Martini E; Eidsmo L; Ball TB; Kimani J; Kaul R; Karlsson AC; Wahlby C; Broliden K; Tjernlund A
• Article: AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY. 2018;80(1):e12863

  The vaginal microbiome amplifies sex hormone-associated cyclic changes in cervicovaginal inflammation and epithelial barrier disruption

  Bradley F; Birse K; Hasselrot K; Noel-Romas L; Introini A; Wefer H; Seifert M; Engstrand L; Tjernlund A; Broliden K; Burgener AD
• Article: LWT-FOOD SCIENCE AND TECHNOLOGY. 2018;93:420-426

  Comparative exoproteome analyses of Lactobacillus spp. reveals species- and strain-specific proteins involved in their extracellular interaction and probiotic potential

  Bagon BB; Valeriano VDV; Oh JK; Pajarillo EAB; Cho C-S; Kang D-K
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2018;115(25):6452-6457

  Synthetic bottom-up approach reveals the complex interplay of Shigella effectors in regulation of epithelial cell death

  Mou X; Souter S; Du J; Reeves AZ; Lesser CF
• Letter: CANCER EPIDEMIOLOGY. 2018;54:139-140

  PPI use and oesophageal cancer: What if the results are true?

  Brusselaers N; Engstrand L; Lagergren J
• Article: MOLECULAR & CELLULAR PROTEOMICS. 2018;17(6):1144-1155

  Comparative Proteomics of Dying and Surviving Cancer Cells Improves the Identification of Drug Targets and Sheds Light on Cell Life/Death Decisions

  Saei AA; Sabatier P; Tokat UG; Chernobrovkin A; Pirmoradian M; Zubarev RA
• Meeting abstract: JOURNAL OF CLINICAL ONCOLOGY. 2018;36(15):e16214

  Applying evidence-based software for NGS in pancreatic cancer: First results from the PePaCaKa study.

  Loehr M; Kordes M; Malgerud L; Kaduthanam S; Frodin JE; Karimi M; Yachnin J; Moro CF; Ghazi S; Heuchel RL; Wirta V; Huelsewig C; Stecker K; Del Chiaro M; Ostman A; Lars E; Brock S; Gustavsson-Liljefors M
• Article: SCIENTIFIC REPORTS. 2018;8(1):7642

  Expressed repetitive elements are broadly applicable reference targets for normalization of reverse transcription-qPCR data in mice

  Renard M; Vanhauwaert S; Vanhomwegen M; Rihani A; Vandamme N; Goossens S; Berx G; Van Vlierberghe P; Haigh JJ; Decaesteker B; Van Laere J; Lambertz I; Speleman F; Vandesompele J; Willaert A
• Letter: CYTOTHERAPY. 2018;20(5):755-758

  Stromal progenitor cell modulation by thalidomide in the treatment of oral chronic graft-versus-host disease

  Davies LC; Board-Davies E; Shamlou B; Boberg E; Garming-Legert K; Le Blanc K
• Corrigendum: SCIENTIFIC REPORTS. 2018;8(1):6004

  Identification and characterization of the novel colonization factor CS30 based on whole genome sequencing in enterotoxigenic Escherichia coli (ETEC) (vol 7, 2017)

  von Mentzer A; Tobias J; Wiklund G; Nordqvist S; Aslett M; Dougan G; Sjoling A; Svennerholm A-M
• Article: MOLECULES. 2018;23(4):891

  New and Old Genes Associated with Primary and Established Responses to Paclitaxel Treatment in Ovarian Cancer Cell Lines.

  Świerczewska M; Klejewski A; Brązert M; Kaźmierczak D; Iżycki D; Nowicki M; Zabel M; Januchowski R
• Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2018;498(3):502-508

  Interferon γ is a strong, STAT1-dependent direct inducer of BCL6 expression in multiple myeloma cells

  Ujvari D; Nagy N; Madapura HS; Kallas T; Krohnke MCL; Stenke L; Klein E; Salamon D
• Letter: GUT. 2018;67(4):778-779

  Faecal microbiota composition associates with abdominal pain in the general population

  Hadizadeh F; Bonfiglio F; Belheouane M; Vallier M; Sauer S; Bang C; Bujanda L; Andreasson A; Agreus L; Engstrand L; Talley NJ; Rafter J; Baines JF; Walter S; Franke A; D'Amato M
• Article: CANCER EPIDEMIOLOGY. 2018;53:172-177

  Maintenance proton pump inhibition therapy and risk of oesophageal cancer

  Brusselaers N; Engstrand L; Lagergren J
• Article: MOLECULAR ORAL MICROBIOLOGY. 2018;33(2):155-167

  Immune response profiling of primary monocytes and oral keratinocytes to different Tannerella forsythia strains and their cell surface mutants

  Bloch S; Zwicker S; Bostanci N; Sjoling A; Bostrom EA; Belibasakis GN; Schaeffer C
• Article: REVISTA ESPANOLA DE QUIMIOTERAPIA. 2018;31(2):160-163

  First clinical isolation report of Shewanella algae from the stools of a patient with acute enteritis in Spain

  Fernandez-Fernandef E; Martin-Rodriguez AJ; Hernandez M; Maria Navarro-Mari J; Romling U; Gutierrez-Fernandez J
• Preprint: BIORXIV. 2018

  A comprehensive automated pipeline for human microbiome sampling, 16S rRNA gene sequencing and bioinformatics processing

  Hugerth LW; Seifert M; Pennhag AAL; Du J; Hamsten MC; Schuppe-Koistinen I; Engstrand L
• Review: CYTOTHERAPY. 2018;20(3):273-278

  MSCs-cells with many sides

  Le Blanc K; Davies LC
• Article: ACTA OBSTETRICIA ET GYNECOLOGICA SCANDINAVICA. 2018;97(3):349-356

  Low levels of anti-secretory factor in placenta are associated with preterm birth and inflammation

  Gustafsson AM; Fransson E; Dubicke A; Hjelmstedt AK; Ekman-Ordeberg G; Silfverdal S-A; Lange S; Jennische E; Bohlin K
• Article: MSPHERE. 2018;3(1):e00517

  &ITIn Situ&IT Analyses Directly in Diarrheal Stool Reveal Large Variations in Bacterial Load and Active Toxin Expression o Enterotoxigenic &ITEscherichia coli&IT and &ITVibrio cholerae&IT

  Begum YA; Rydberg HA; Thorell K; Kwak Y-K; Sun L; Joffre E; Qadri F; Sjoling A
• Journal article: MICROBIOME. 2018;6(1):28

  Effects of predation stress and food ration on perch gut microbiota

  Zha Y; Eiler A; Johansson F; Svanback R
• Article: GUT. 2018;67(2):263-270

  Functional variants in the sucrase-isomaltase gene associate with increased risk of irritable bowel syndrome

  Henstrom M; Diekmann L; Bonfiglio F; Hadizadeh F; Kuech E-M; von Koeckritz-Blickwede M; Thingholm LB; Zheng T; Assadi G; Dierks C; Heine M; Philipp U; Distl O; Money ME; Belheouane M; Heinsen F-A; Rafter J; Nardone G; Cuomo R; Usai-Satta P; Galeazzi F; Neri M; Walter S; Simren M; Karling P; Ohlsson B; Schmidt PT; Lindberg G; Dlugosz A; Agreus L; Andreasson A; Mayer E; Baines JF; Engstrand L; Portincasa P; Bellini M; Stanghellini V; Barbara G; Chang L; Camilleri M; Franke A; Naim HY; D'Amato M
• Article: ACTA PAEDIATRICA. 2018;107(2):294-300

  Preschool children living in joint physical custody arrangements show less psychological symptoms than those living mostly or only with one parent

  Bergstrom M; Fransson E; Fabian H; Hjern A; Sarkadi A; Salari R
• Journal article: JOURNAL OF CROHNS & COLITIS. 2018;12(supplement_1):s468-s469

  P707 Increasing abundance of faecalibacterium prausnitzii is associated with decreased intestinal inflammation in Crohn’s disease: A longitudinal study

  Björkqvist O; Repsilber D; Seifert M; Engstrand L; Rangel I; Halfvarson J
• Review: CRITICAL REVIEWS IN MICROBIOLOGY. 2018;44(1):1-30

  "It's a gut feeling" - Escherichia coli biofilm formation in the gastrointestinal tract environment

  Rossi E; Cimdins A; Luthje P; Brauner A; Sjoling A; Landini P; Romling U
• Article: CHILD INDICATORS RESEARCH. 2018;11(3):861-883

  The Living Conditions of Children with Shared Residence - the Swedish Example

  Fransson E; Laftman SB; Ostberg V; Hjern A; Bergstrom M
• Article: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. 2018;141(1):382-390.e7

  Exposure to nonmicrobial N-glycolylneuraminic acid protects farmers' children against airway inflammation and colitis

  Frei R; Ferstl R; Roduit C; Ziegler M; Schiavi E; Barcik W; Rodriguez-Perez N; Wirz OF; Wawrzyniak M; Pugin B; Nehrbass D; Jutel M; Smolinska S; Konieczna P; Bieli C; Loeliger S; Waser M; Pershagen G; Riedler J; Depner M; Schaub B; Genuneit J; Renz H; Pekkanen J; Karvonen AM; Dalphin J-C; van Hage M; Doekes G; Akdis M; Braun-Fahrlander C; Akdis CA; von Mutius E; O'Mahony L; Lauener RP
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2018;8:368

  The 9H-Fluoren Vinyl Ether Derivative SAM461 Inhibits Bacterial Luciferase Activity and Protects Artemia franciscana From Luminescent Vibriosis

  Martin-Rodriguez AJ; Alvarez-Mendez SJ; Overa C; Baruah K; Lourenco TM; Norouzitallab P; Bossier P; Martin VS; Fernandez JJ
• Article: JOURNAL OF CELLULAR AND MOLECULAR MEDICINE. 2018;22(1):163-172

  Prokineticin 1 is up-regulated by insulin in decidualizing human endometrial stromal cells

  Ujvari D; Jakson I; Oldmark C; Attarha S; Alkasalias T; Salamon D; Gidlof S; Hirschberg AL
• Journal article: PLOS ONE. 2018;13(12):e0208804

  Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics

  Karlsson R; Gonzales-Siles L; Gomila M; Busquets A; Salva-Serra F; Jaen-Luchoro D; Jakobsson HE; Karlsson A; Boulund F; Kristiansson E; Moore ERB
• Conference publication: JOURNAL OF CROHNS & COLITIS. 2018;12:S468-S469

  Increasing abundance of faecalibacterium prausnitzii is associated with decreased intestinal inflammation in Crohn's disease: A longitudinal study

  Bjorkqvist O; Repsilber D; Seifert M; Engstrand L; Rangel I; Halfvarson J
• Conference publication: HELICOBACTER. 2018;23

  FIT test-systems for mega-scale gut microbiome testing

  Gudra D; Fridmanis D; Klovins J; Skenders G; Silamikelis I; Radovica-Spalvina I; Peculis R; Kalnina I; Elbere I; Hultcrantz R; Leja M; Engstrand L
• Book chapter: METAGENOMICS. 2018;p. 81-102

  Chapter 4 Computational and Statistical Considerations in the Analysis of Metagenomic Data

  Boulund F; Pereira MB; Jonsson V; Kristiansson E
• Other: JMM CASE REP. 2017;4(12):e005131

  Shewanella spp. infections in Gran Canaria, Spain: retrospective analysis of 31 cases and a literature review.

  Martín-Rodríguez AJ; Martín-Pujol O; Artiles-Campelo F; Bolaños-Rivero M; Römling U
• Article: ACTA PAEDIATRICA. 2017;106(12):2048-2054

  National data study showed that adolescents living in poorer households and with one parent were more likely to be bullied

  Laftman SB; Fransson E; Modin B; OEstberg V
• Article: EXPERIMENTAL PARASITOLOGY. 2017;183:167-170

  In vitro interactions of Acanthamoeba castellanii Neff and Vibrio harveyi

  Reyes-Batlle M; Martin-Rodriguez AJ; Lopez-Arencibia A; Sifaoui I; Rizo Liendo A; Bethencourt Estrella CJ; Garcia Mendez AB; Chiboub O; Hajaji S; Valladares B; Martinez-Carretero E; Pinero JE; Lorenzo-Morales J
• Doctoral thesis: 2017

  Polycystic ovary syndrome (PCOS) : role of androgens and obesity on placental function and fetal development

  Fornes R
• Review: BRITISH JOURNAL OF DERMATOLOGY. 2017;177(5):1272-1278

  The role of the skin microbiome in atopic dermatitis: a systematic review

  Bjerre RD; Bandier J; Skov L; Engstrand L; Johansen JD
• Article: BMJ OPEN. 2017;7(10):e017739

  Maintenance therapy with proton pump inhibitors and risk of gastric cancer: a nationwide population-based cohort study in Sweden

  Brusselaers N; Wahlin K; Engstrand L; Lagergren J
• Review: ANTICANCER RESEARCH. 2017;37(10):5319-5328

  Human Papillomavirus and Potentially Relevant Biomarkers in Tonsillar and Base of Tongue Squamous Cell Carcinoma

  Nazsman A; Bersani C; Lindquist D; Du J; Ramqvist T; Dalianis T
• Article: SCIENTIFIC REPORTS. 2017;7(1):12514

  Identification and characterization of the novel colonization factor CS30 based on whole genome sequencing in enterotoxigenic Escherichia coli (ETEC)

  von Mentzer A; Tobias J; Wiklund G; Nordqvist S; Aslett M; Dougan G; Sjoling A; Svennerholm A-M
• Article: FEMS MICROBIOLOGY LETTERS. 2017;364(18):fnx185

  Complete genome analysis of Lactobacillus fermentum SK152 from kimchi reveals genes associated with its antimicrobial activity

  Yoo D; Bagon BB; Valeriano VDV; Oh JK; Kim H; Cho S; Kang D-K
• Article: MOLECULAR ONCOLOGY. 2017;11(10):1413-1429

  Bioinformatory-assisted analysis of next-generation sequencing data for precision medicine in pancreatic cancer

  Malgerud L; Lindberg J; Wirta V; Gustafsson-Liljefors M; Karimi M; Moro CF; Stecker K; Picker A; Huelsewig C; Stein M; Bohnert R; Del Chiaro M; Haas SL; Heuchel RL; Permert J; Maeurer MJ; Brock S; Verbeke CS; Engstrand L; Jackson DB; Gronberg H; Lohr J-M
• Article: INFECTION AND IMMUNITY. 2017;85(10):e00031-e00017

  In Vivo Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis

  Thorell K; Bengtsson-Palme J; Liu OH-F; Gonzales RVP; Nookaew I; Rabeneck L; Paszat L; Graham DY; Nielsen J; Lundin SB; Sjoling A
• Article: INFECTION GENETICS AND EVOLUTION. 2017;54:74-80

  Time to review the gold standard for genotyping vancomycin-resistant enterococci in epidemiology: Comparing whole-genome sequencing with PFGE and MLSTin three suspected outbreaks in Sweden during 2013-2015

  Lytsy B; Engstrand L; Gustafsson A; Kaden R
• Article: MICROBIOLOGYOPEN. 2017;6(5):e00508

  Alterations of c-di-GMP turnover proteins modulate semi-constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli

  Cimdins A; Simm R; Li F; Luthje P; Thorell K; Sjoling A; Brauner A; Romling U
• Journal article: BMC GENOMICS. 2017;18(1):682

  Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets.

  Boulund F; Berglund F; Flach C-F; Bengtsson-Palme J; Marathe NP; Larsson DGJ; Kristiansson E
• Review: DRUG DISCOVERY TODAY. 2017;22(9):1295-1301

  Nanoparticles for immune system targeting

  Du J; Zhang YS; Hobson D; Hydbring P
• Review: CHEMISTRY OF MATERIALS. 2017;29(16):6578-6595

  Nanoparticle Surface Functionality Dictates Cellular and Systemic Toxicity

  Saei AA; Yazdani M; Lohse SE; Bakhtiary Z; Serpooshan V; Ghavami M; Asadian M; Mashaghi S; Dreaden EC; Mashaghi A; Mahmoudi M
• Article: SCIENTIFIC REPORTS. 2017;7(1):8066

  The effect of androgen excess on maternal metabolism, placental function and fetal growth in obese dams

  Fornes R; Maliqueo M; Hu M; Hadi L; Jimenez-Andrade JM; Ebefors K; Nystrom J; Labrie F; Jansson T; Benrick A; Stener-Victorin E
• Article: ONCOGENE. 2017;36(32):4619-4628

  Interferon γ is a STAT1-dependent direct inducer of BCL6 expression in imatinib-treated chronic myeloid leukemia cells

  Madapura HS; Nagy N; Ujvari D; Kallas T; Krohnke MCL; Amu S; Bjorkholm M; Stenke L; Mandal PK; McMurray JS; Keszei M; Westerberg LS; Cheng H; Xue F; Klein G; Klein E; Salamon D
• Article: DRUG DEVELOPMENT AND INDUSTRIAL PHARMACY. 2017;43(8):1244-1253

  Microparticles containing erlotinib-loaded solid lipid nanoparticles for treatment of non-small cell lung cancer

  Bakhtiary Z; Barar J; Aghanejad A; Saei AA; Nemati E; Dolatabadi JEN; Omidi Y
• Article: PUBLIC HEALTH. 2017;149:106-112

  Self-esteem in children in joint physical custody and other living arrangements

  Turunen J; Fransson E; Bergstrom M
• Article: BIOMARKERS. 2017;22(5):461-469

  A longitudinal assessment of miR-122 and GLDH as biomarkers of drug-induced liver injury in the rat

  Thulin P; Hornby RJ; Auli M; Nordahl G; Antoine DJ; Lewis PS; Goldring CE; Park BK; Prats N; Glinghammar B; Schuppe-Koistinen I
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2017;52(6-7):678-685

  Helicobacter pylori eradication in the Swedish population.

  Doorakkers E; Lagergren J; Gajulapuri VK; Callens S; Engstrand L; Brusselaers N
• Article: GEOMICROBIOLOGY JOURNAL. 2017;34(6):538-545

  Mineral Type Structures Soil Microbial Communities

  Ahmed E; Hugerth LW; Logue JB; Bruchert V; Andersson AF; Holmstrom SJM
• Article: MOLECULAR AND CELLULAR ENDOCRINOLOGY. 2017;448(C):66-76

  Exercise Exercise differentially affects metabolic functions and white adipose tissue in female letrozole-and dihydrotestosterone-induced mouse models of polycystic ovary syndrome

  Marcondes RR; Maliqueo M; Fornes R; Benrick A; Hu M; Ivarsson N; Carlstrom M; Cushman SW; Stenkula KG; Maciel GAR; Stener-Victorin E
• Editorial comment: TRANSPLANTATION AND CELLULAR THERAPY. 2017;23(6):861-862

  Commentary: Role of Mesenchymal Stromal Cell-Mediated Crosstalk with Macrophages in Graft-versus-Host Disease and Tissue Repair

  Davies LC; Boberg E; Le Blanc K
• Article: AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY. 2017;216(6):602.e1-602.e21

  The preterm cervix reveals a transcriptomic signature in the presence of premature prelabor rupture of membranes

  Makieva S; Dubicke A; Rinaldi SF; Fransson E; Ekman-Ordeberg G; Norman JE
• Journal article: MOLECULAR & CELLULAR PROTEOMICS. 2017;16(6):1052-1063

  Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics

  Boulund F; Karlsson R; Gonzales-Siles L; Johnning A; Karami N; Al-Bayati O; Ahren C; Moore ERB; Kristiansson E
• Journal article: ANNALS OF ONCOLOGY. 2017;28:iii22

  P-033 FIT test-systems for mega-scale gut microbiome testing

  Gudra D; Fridmanis D; Klovins J; Skenders G; Silamikelis I; Radovica-Spalvina I; Peculis R; Kalnina I; Elbere I; Hultcrantz R; Leja M; Engstrand L
• Article: ZYGOTE. 2017;25(3):331-340

  Morphogenesis-related gene-expression profile in porcine oocytes before and after in vitro maturation.

  Budna J; Chachuła A; Kaźmierczak D; Rybska M; Ciesiółka S; Bryja A; Kranc W; Borys S; Żok A; Bukowska D; Antosik P; Bruska M; Brüssow KP; Nowicki M; Zabel M; Kempisty B
• Editorial comment: CURRENT TOPICS IN MEDICINAL CHEMISTRY. 2017;17(17):1887-1888

  Recent Advances in Anti-biofilm Strategies

  Martin-Rodriguez AJ
• Book chapter: MALDI‐TOF AND TANDEM MS FOR CLINICAL MICROBIOLOGY. 2017;p. 419-450

  Proteotyping

  Karlsson R; Gonzales‐Siles L; Boulund F; Lindgren Å; Svensson‐Stadler L; Karlsson A; Kristiansson E; Moore ERB
• Article: PSYCHONEUROENDOCRINOLOGY. 2017;79:146-159

  Inflammatory markers in late pregnancy in association with postpartum depression-A nested case-control study

  Brann E; Papadopoulos F; Fransson E; White R; Edvinsson A; Hellgren C; Kamali-Moghaddam M; Bostrom A; Schioth HB; Sundstrom-Poromaa I; Skalkidou A
• Article: INTERNATIONAL JOURNAL OF CANCER. 2017;140(8):1727-1735

  Helicobacter pylori infection, chronic corpus atrophic gastritis and pancreatic cancer risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort: A nested case-control study

  Huang J; Zagai U; Hallmans G; Nyren O; Engstrand L; Stolzenberg-Solomon R; Duell EJ; Overvad K; Katzke VA; Kaaks R; Jenab M; Park JY; Murillo R; Trichopoulou A; Lagiou P; Bamia C; Bradbury KE; Riboli E; Aune D; Tsilidis KK; Capella G; Agudo A; Krogh V; Palli D; Panico S; Weiderpass E; Tjonneland A; Olsen A; Martinez B; Redondo-Sanchez D; Chirlaque M-D; Peeters PH; Regner S; Lindkvist B; Naccarati A; Ardanaz E; Larranaga N; Boutron-Ruault M-C; Rebours V; Barre A; Bueno-de-Mesquita HBA; Ye W
• Article: GENOME ANNOUNCEMENTS. 2017;5(14):e00125-e00117

  Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F

  Jakobsson HE; Salva-Serra F; Thorell K; Karlsson R; Gonzales-Siles L; Boulund F; Engstrand L; Kristiansson E; Moore ERB
• Article: OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY. 2017;21(4):207-216

  Genome-Wide Association and Replication Study of Hepatotoxicity Induced by Antiretrovirals Alone or with Concomitant Anti-Tuberculosis Drugs

  Petros Z; Lee MTM; Takahashi A; Zhang Y; Yimer G; Habtewold A; Schuppe-Koistinen I; Mushiroda T; Makonnen E; Kubo M; Aklillu E
• Review: MICROBIOME. 2017;5(1):31

  Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

  Pammi M; Cope J; Tarr PI; Warner BB; Morrow AL; Mai V; Gregory KE; Kroll JS; McMurtry V; Ferris MJ; Engstrand L; Lilja HE; Hollister EB; Versalovic J; Neu J
• Article: CELL HOST & MICROBE. 2017;21(3):376-389

  Helicobacter pylori Adapts to Chronic Infection and Gastric Disease via pH-Responsive BabA-Mediated Adherence

  Bugaytsova JA; Bjornham O; Chernov YA; Gideonsson P; Henriksson S; Mendez M; Sjostrom R; Mahdavi J; Shevtsova A; Ilver D; Moonens K; Quintana-Hayashi MP; Moskalenko R; Aisenbrey C; Bylund G; Schmidt A; Aberg A; Brannstrom K; Koeniger V; Vikstrom S; Rakhimova L; Hofer A; Ogren J; Liu H; Goldman MD; Whitmire JM; Aden J; Younson J; Kelly CG; Gilman RH; Chowdhury A; Mukhopadhyay AK; Nair GB; Papadakos KS; Martinez-Gonzalez B; Sgouras DN; Engstrand L; Unemo M; Danielsson D; Suerbaum S; Oscarson S; Morozova-Roche LA; Olofsson A; Grobner G; Holgersson J; Esberg A; Stromberg N; Landstrom M; Eldridge AM; Chromy BA; Hansen LM; Solnick JV; Linden SK; Haas R; Dubois A; Merrell DS; Schedin S; Remaut H; Arnqvist A; Berg DE; Boren T
• Letter: GUT. 2017;66(3):559-560

  Stool frequency is associated with gut microbiota composition

  Hadizadeh F; Walter S; Belheouane M; Bonfiglio F; Heinsen F-A; Andreasson A; Agreus L; Engstrand L; Baines JF; Rafter J; Franke A; D'Amato M
• Article: ENVIRONMENTAL MICROBIOLOGY. 2017;19(3):1222-1236

  Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers

  Lindh MV; Sjostedt J; Ekstam B; Casini M; Lundin D; Hugerth LW; Hu YOO; Andersson AF; Andersson A; Legrand C; Pinhassi J
• Review: JOURNAL OF APPLIED MICROBIOLOGY. 2017;122(3):554-567

  Probiotic roles of Lactobacillus sp in swine: insights from gut microbiota

  Valeriano VDV; Balolong MP; Kang D-K
• Article: STEM CELLS. 2017;35(3):766-776

  Mesenchymal Stromal Cell Secretion of Programmed Death-1 Ligands Regulates T Cell Mediated Immunosuppression

  Davies LC; Heldring N; Kadri N; Le Blanc K
• Journal article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2017;28(sup1):1281946

  FIBFLO – a study design for comparing the effects of diets on the microbiome and its metabolism: β-glucan or not?

  Norin E; Engstrand L; Hellström P; Marais LM; Midtvedt T; Möllby R; Ernberg I
• Article: SCIENTIFIC REPORTS. 2017;7:42471

  Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins

  Vale FF; Nunes A; Oleastro M; Gomes JP; Sampaio DA; Rocha R; Vitor JMB; Engstrand L; Pascoe B; Berthenet E; Sheppard SK; Hitchings MD; Megraud F; Vadivelu J; Lehours P
• Article: BMC MICROBIOLOGY. 2017;17(1):11

  Proteomic analysis of enterotoxigenic Escherichia coli (ETEC) in neutral and alkaline conditions

  Gonzales-Siles L; Karlsson R; Kenny D; Karlsson A; Sjoling A
• Review: CURRENT TOPICS IN MEDICINAL CHEMISTRY. 2017;17(17):1928-1944

  Nucleotide Second Messenger Signaling as a Target for the Control of Bacterial Biofilm Formation

  Martin-Rodriguez AJ; Romling U
• Article: NEW MICROBES AND NEW INFECTIONS. 2017;15:6-8

  First case of human bacteraemia by Catabacter hongkongensis in Scandinavia.

  Kaden R; Thelander M; Engstrand L; Herrmann B
• Article: PLOS ONE. 2017;12(1):e0171004

  Dysregulation of In Vitro Decidualization of Human Endometrial Stromal Cells by Insulin via Transcriptional Inhibition of Forkhead Box Protein O1

  Ujvari D; Jakson I; Babayeva S; Salamon D; Rethi B; Gidlof S; Hirschberg AL
• Article: FRONTIERS IN MICROBIOLOGY. 2017;8:738

  Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.

  Wampach L; Heintz-Buschart A; Hogan A; Muller EEL; Narayanasamy S; Laczny CC; Hugerth LW; Bindl L; Bottu J; Andersson AF; de Beaufort C; Wilmes P
• Review: FRONTIERS IN MICROBIOLOGY. 2017;8:1561

  Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing

  Hugerth LW; Andersson AF
• Article: FRONTIERS IN MICROBIOLOGY. 2017;8:2459

  Proteomic View of the Crosstalk between Lactobacillus mucosae and Intestinal Epithelial Cells in Co-culture Revealed by Q Exactive-Based Quantitative Proteomics

  Pajarillo EAB; Kim SH; Valeriano VD; Lee JY; Kang D-K
• Article: LIVER INTERNATIONAL. 2017;37(1):132-140

  Elevated levels of circulating CDH5 and FABP1 in association with human drug-induced liver injury

  Mikus M; Drobin K; Gry M; Bachmann J; Lindberg J; Yimer G; Aklillu E; Makonnen E; Aderaye G; Roach J; Fier I; Kampf C; Goepfert J; Perazzo H; Poynard T; Stephens C; Andrade RJ; Isabel Lucena M; Arber N; Uhlen M; Watkins PB; Schwenk JM; Nilsson P; Schuppe-Koistinen I
• Article: PSYCHIATRY RESEARCH. 2017;247:105-112

  Kynurenic acid and psychotic symptoms and personality traits in twins with psychiatric morbidity

  Kegel ME; Johansson V; Wetterberg L; Bhat M; Schwieler L; Cannon TD; Schuppe-Koistinen I; Engberg G; Landen M; Hultman CM; Erhardt S
• Article: PLOS ONE. 2017;12(12):e0189436

  Serum apolipoprotein A1 and haptoglobin, in patients with suspected drug-induced liver injury (DILI) as biomarkers of recovery.

  Peta V; Tse C; Perazzo H; Munteanu M; Ngo Y; Ngo A; Ramanujam N; Verglas L; Mallet M; Ratziu V; Thabut D; Rudler M; Thibault V; Schuppe-Koistinen I; Bonnefont-Rousselot D; Hainque B; Imbert-Bismut F; Merz M; Kullak-Ublick G; Andrade R; van Boemmel F; Schott E; Poynard T; Drug Induced Liver Injury- Groupe Hospitalier Piti; Drug Induced Liver Group of the Injury Safer and F
• Article: PLOS ONE. 2017;12(3):e0174614

  Improvement of identification methods for honeybee specific Lactic Acid Bacteria; future approaches

  Lamei S; Hu YOO; Olofsson TC; Andersson AF; Forsgren E; Vasquez A
• Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2017;7:537

  The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators

  Jers C; Ravikumar V; Lezyk M; Sultan A; Sjoling A; Wai SN; Mijakovic I
• Article: PLOS ONE. 2017;12(12):e0189222

  Genomic and phenotypic characteristics of Swedish C. jejuni water isolates

  Nilsson A; Johansson C; Skarp A; Kaden R; Engstrand L; Rautelin H
• Article: BIOLOGY OF REPRODUCTION. 2017;96(1):24-33

  Comprehensive RNA sequencing of healthy human endometrium at two time points of the menstrual cycle

  Sigurgeirsson B; Amark H; Jemt A; Ujvari D; Westgren M; Lundeberg J; Gidlof S
• Article: GASTRIC CANCER. 2017;20(1):116-125

  CD4⁺ regulatory T cells in gastric cancer mucosa are proliferating and express high levels of IL-10 but little TGF-β

  Kindlund B; Sjoling A; Yakkala C; Adamsson J; Janzon A; Hansson L-E; Hermansson M; Janson P; Winqvist O; Lundin SB
• Conference publication: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2017;86(4):299

  Environmental imprinting on the human immune system early in life

  Olin A; Henckel E; Chen Y; Gustavsson A; Lakshmikanth T; Mikes J; Pou C; Hugerth LW; Engstrand L; Bohlin K; Brodin P
• Book chapter: REFERENCE MODULE IN BIOMEDICAL SCIENCES. 2017;p.

  Infectious Diseases: Helicobacter pylori☆

  Enroth H; Engstrand L
• Book chapter: INTERNATIONAL ENCYCLOPEDIA OF PUBLIC HEALTH. 2017;p. 527-531

  Helicobacter pylori

  Enroth H; Engstrand L
• Journal article: GENOME ANNOUNCEMENTS. 2016;4(6):e01382-e01316

  Draft Genome Sequence of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strain CCUG 62462, Isolated from a Urine Sample.

  Johnning A; Jakobsson HE; Boulund F; Salvà-Serra F; Moore ERB; Åhrén C; Karami N; Kristiansson E
• Article: STEM CELLS TRANSLATIONAL MEDICINE. 2016;5(11):1485-1495

  Type 1 Diabetes Mellitus Donor Mesenchymal. Stromal Cells Exhibit Comparable Potency to Healthy Controls In Vitro

  Davies LC; Alm JJ; Heldring N; Moll G; Gavin C; Batsis I; Qian H; Sigvardsson M; Nilsson B; Kyllonen LE; Salmela KT; Carlsson P-O; Korsgren O; Le Blanc K
• Article: INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY. 2016;306(7):586-594

  Identification of new heat-stable (STa) enterotoxin allele variants produced by human enterotoxigenic Escherichia coli (ETEC)

  Joffe E; von Mentzer A; Svennerholm A-M; Sjoling A
• Article: INTERNATIONAL BIODETERIORATION & BIODEGRADATION. 2016;115:17-25

  Biodegradation mechanism of microcystin-LR by a novel isolate of Rhizobium sp TH and the evolutionary origin of the mlrA gene

  Zhu X; Shen Y; Chen X; Hu YOO; Xiang H; Tao J; Ling Y
• Article: GENOME ANNOUNCEMENTS. 2016;4(5):e01118-e01116

  Complete Genome Sequences of Two Marine Vibrio cholerae Strains Isolated from the South Coast of Sweden

  Thorell K; Collin B; Hernroth B; Sjoling A
• Article: UNITED EUROPEAN GASTROENTEROLOGY JOURNAL. 2016;4(5):686-696

  Towards a healthy stomach? Helicobacter pylori prevalence has dramatically decreased over 23 years in adults in a Swedish community

  Agreus L; Hellstrom PM; Talley NJ; Wallner B; Forsberg A; Vieth M; Veits L; Bjorkegren K; Engstrand L; Andreasson A
• Article: ARCHIVES OF ORAL BIOLOGY. 2016;70:100-110

  Oral mucosal progenitor cell clones resist in vitro myogenic differentiation

  Locke M; Davies LC; Stephens P
• Article: BMC GENOMICS. 2016;17(1):755

  Genome-wide association and replication study of anti-tuberculosis drugs-induced liver toxicity

  Petros Z; Lee M-TM; Takahashi A; Zhang Y; Yimer G; Habtewold A; Amogne W; Aderaye G; Schuppe-Koistinen I; Mushiroda T; Makonnen E; Kubo M; Aklillu E
• Article: MOLECULAR AND CELLULAR ENDOCRINOLOGY. 2016;433(C):1-11

  Maternal testosterone and placental function: Effect of electroacupuncture on placental expression of angiogenic markers and fetal growth

  Fornes R; Hu M; Maliqueo M; Kokosar M; Benrick A; Carr D; Billig H; Jansson T; Manni L; Stener-Victorin E
• Review: JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2016;108(9):djw132

  Eradication of Helicobacter pylori and Gastric Cancer: A Systematic Review and Meta-analysis of Cohort Studies

  Doorakkers E; Lagergren J; Engstrand L; Brusselaers N
• Article: PROTEOMICS. 2016;16(18):2454-2460

  Strategies to improve usability and preserve accuracy in biological sequence databases

  Bengtsson-Palme J; Boulund F; Edstrom R; Feizi A; Johnning A; Jonsson VA; Karlsson FH; Pal C; Pereira MB; Rehammar A; Sanchez J; Sanli K; Thorell K
• Meeting abstract: CANCER RESEARCH. 2016;76:3165

  An evidence-based software tool for personalized cancer medicine to recommend therapeutic options and avoid toxicity

  Lohr M; Stecker K; Huelsewig C; Morandell S; Ertongur I; Luke-Glaser S; Laib A; Malgerud L; Moro CF; Karimi M; Permert J; Heuchel R; Lindberg J; Wirta V; Picker A; Del Chiaro M; Haas SL; Verbek CS; Engstrand L; Siveke J; Jackson D; Gronberg H; Jager D; Brock S
• Editorial comment: MOLECULAR PLANT. 2016;9(7):956-958

  Plant Perceptions of Extracellular DNA and RNA.

  Bhat A; Ryu C-M
• Letter: DIGESTIVE DISEASES AND SCIENCES. 2016;61(7):2140-2141

  A Role for Bacteria in Celiac Disease?

  Tjellstrom B; Hogberg L; Stenhammar L; Magnusson K-E; Midtvedt T; Norin E; Sundqvist T
• Article: JOURNAL OF MICROBIOLOGY. 2016;54(7):510-519

  Carbohydrate-binding specificities of potential probiotic Lactobacillus strains in porcine jejunal (IPEC-J2) cells and porcine mucin

  Valeriano VD; Bagon BB; Balolong MP; Kang D-K
• Article: PSYCHONEUROENDOCRINOLOGY. 2016;69:142-149

  Tandem mass spectrometry determined maternal cortisone to cortisol ratio and psychiatric morbidity during pregnancy-interaction with birth weight

  Hellgren C; Edvinsson A; Olivier JD; Fornes R; Stener-Victorin E; Ubhayasekera SJKA; Skalkidou A; Bergquist J; Sundstrom-Poromaa I
• Article: COLLOIDS AND SURFACES B-BIOINTERFACES. 2016;143:224-232

  Theranostic MUC-1 aptamer targeted gold coated superparamagnetic iron oxide nanoparticles for magnetic resonance imaging and photothermal therapy of colon cancer

  Azhdarzadeh M; Atyabi F; Saei AA; Varnamkhasti BS; Omidi Y; Fateh M; Ghavami M; Shanehsazzadeh S; Dinarvand R
• Article: CHILDREN AND YOUTH SERVICES REVIEW. 2016;66:154-160

  Why should they live more with one of us when they are children to us both? Parents' motives for practicing equal joint physical custody for children aged 0-4

  Fransson E; Sarkadi A; Hjern A; Bergstrom M
• Article: GENOME ANNOUNCEMENTS. 2016;4(3):e00552-e00516

  Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353^T

  Jakobsson HE; Salva-Serra F; Thorell K; Gonzales-Siles L; Boulund F; Karlsson R; Sikora P; Engstrand L; Kristiansson E; Moore ERB
• Article: SCIENTIFIC REPORTS. 2016;6:28168

  Combination therapy with polymyxin B and netropsin against clinical isolates of multidrug-resistant Acinetobacter baumannii.

  Chung J-H; Bhat A; Kim C-J; Yong D; Ryu C-M
• Article: ECOLOGICAL INFORMATICS. 2016;33:45-50

  Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2

  Bengtsson-Palme J; Thorell K; Wurzbacher C; Sjoling A; Nilsson RH
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2016;113(17):4794-4799

  The type III secretion system apparatus determines the intracellular niche of bacterial pathogens

  Du J; Reeves AZ; Klein JA; Twedt DJ; Knodler LA; Lesser CF
• Article: JOURNAL OF INVESTIGATIVE MEDICINE HIGH IMPACT CASE REPORTS. 2016;4(2):2324709616648458

  From IBS to DBS: The Dysbiotic Bowel Syndrome

  Benno P; Dahlgren A-L; Befrits R; Norin E; Hellstrom PM; Midtvedt T
• Journal article: ANAEROBE. 2016;38:138-139

  Missing microbes – A must-read written by an influential pioneer Martin J.BlaserMissing Microbes – How the Overuse of Antibiotics Is Fueling Our Modern Plagues2014Macmillan978-0805098105288

  Engstrand L
• Article: GENOME ANNOUNCEMENTS. 2016;4(2):e00175-e00116

  Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482^T

  Salva-Serra F; Jakobsson HE; Thorell K; Gonzales-Siles L; Hallback ET; Jaen-Luchoro D; Boulund F; Sikora P; Karlsson R; Svensson L; Bennasar A; Engstrand L; Kristiansson E; Moore ERB
• Article: SCIENTIFIC REPORTS. 2016;6:22883

  Epigenetic and Transcriptional Alterations in Human Adipose Tissue of Polycystic Ovary Syndrome

  Kokosar M; Benrick A; Perfilyev A; Fornes R; Nilsson E; Maliqueo M; Behre CJ; Sazonova A; Ohlsson C; Ling C; Stener-Victorin E
• Article: SCANDINAVIAN JOURNAL OF PUBLIC HEALTH. 2016;44(2):177-183

  Psychological complaints among children in joint physical custody and other family types: Considering parental factors

  Fransson E; Turunen J; Hjern A; Ostberg V; Bergstrom M
• Review: ENVIRONMENTAL MICROBIOLOGY. 2016;18(3):741-751

  The different ecological niches of enterotoxigenic Escherichia coli

  Gonzales-Siles L; Sjoling A
• Article: JOURNAL OF NEUROINFLAMMATION. 2016;13(1):51

  Electroconvulsive therapy suppresses the neurotoxic branch of the kynurenine pathway in treatment-resistant depressed patients

  Schwieler L; Samuelsson M; Frye MA; Bhat M; Schuppe-Koistinen I; Jungholm O; Johansson AG; Landen M; Sellgren CM; Erhardt S
• Article: BMC EVOLUTIONARY BIOLOGY. 2016;16:53

  Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

  Thorell K; Hosseini S; Palacios Gonzales RVP; Chaotham C; Graham DY; Paszat L; Rabeneck L; Lundin SB; Nookaew I; Sjoling A
• Review: NANOMEDICINE-NANOTECHNOLOGY BIOLOGY AND MEDICINE. 2016;12(2):287-307

  Targeted superparamagnetic iron oxide nanoparticles for early detection of cancer: Possibilities and challenges

  Bakhtiary Z; Saei AA; Hajipour MJ; Raoufi M; Vermesh O; Mahmoudi M
• Article: BRITISH JOURNAL OF NUTRITION. 2016;115(1):62-67

  Oatmeal porridge: impact on microflora-associated characteristics in healthy subjects

  Valeur J; Puaschitz NG; Midtvedt T; Berstad A
• Article: SCIENCE. 2016;351(6269):162-165

  The 5300-year-old Helicobacter pylori genome of the Iceman

  Maixner F; Krause-Kyora B; Turaev D; Herbig A; Hoopmann MR; Hallows JL; Kusebauch U; Vigl EE; Malfertheiner P; Megraud F; O'Sullivan N; Cipollini G; Coia V; Samadelli M; Engstrand L; Linz B; Moritz RL; Grimm R; Krause J; Nebel A; Moodley Y; Rattei T; Zink A
• Article: GUT MICROBES. 2016;7(1):75-81

  The LT1 and LT2 variants of the enterotoxigenic &ITEscherichia coil &IT(ETEC) heat-labile toxin (LT) are associated with major ETEC lineages

  Joffre E; Sjoling A
• Article: FRONTIERS IN MICROBIOLOGY. 2016;7:1757

  Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics

  Karlsson R; Thorell K; Hosseini S; Kenny D; Sihlbom C; Sjoling A; Karlsson A; Nookaew I
• Article: FRONTIERS IN MICROBIOLOGY. 2016;7:679

  Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea

  Hu YOO; Karlson B; Charvet S; Andersson AF
• Article: PLOS ONE. 2016;11(4):e0152899

  Stability of the Encoding Plasmids and Surface Expression of CS6 Differs in Enterotoxigenic Escherichia coli (ETEC) Encoding Different Heat-Stable (ST) Enterotoxins (STh and STp)

  Tobias J; Von Mentzer A; Frykberg PL; Aslett M; Page AJ; Sjoling A; Svennerholm A-M
• Article: CLINICAL MICROBIOLOGY AND INFECTION. 2016;22(1):61.e1-61.e8

  Composition of human faecal microbiota in resistance to Campylobacter infection

  Kampmann C; Dicksved J; Engstrand L; Rautelin H
• Letter: DIGESTIVE DISEASES AND SCIENCES. 2016;61(7):2140-2141

  Role of Dysbiosis in Celiac Disease: Which Came First, the Chicken or the Egg? Reply

  Tjellstrom B; Hogberg L; Stenhammar L; Magnusson K-E; Midtvedt T; Norin E; Sundqvist T
• Conference publication: HELICOBACTER. 2016;21:86

  Genomes of Helicobacter pylori prophages

  Vale FF; Nunes A; Oleastro M; Gomes JP; Sampaio DA; Rocha R; Vitor J; Engstrand L; Pascoe B; Berthenet E; Sheppard S; Hitchings MD; Megraud F; Vadivedu J; Lehours P
• Conference publication: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2016;83(5):380-381

  Microbe-host interplay in atopic dermatitis and psoriasis

  Fyhrquist N; Andersson B; Kere J; Muirhead G; Prast-Nielsen S; Jeanmougin M; Barker J; Lauerma A; Homey B; Schroeder J; Soumelis V; Nestle F; Alenius H
• Journal article: PLOS ONE. 2016;11(5):e0155239

  Effects of Dispersal and Initial Diversity on the Composition and Functional Performance of Bacterial Communities

  Zha Y; Berga M; Comte J; Langenheder S
• Article: GENOME BIOLOGY. 2015;16:279

  Metagenome-assembled genomes uncover a global brackish microbiome.

  Hugerth LW; Larsson J; Alneberg J; Lindh MV; Legrand C; Pinhassi J; Andersson AF
• Letter: ORAL ONCOLOGY. 2015;51(12):e97-e99

  Enhanced oral healing following local mesenchymal stromal cell therapy

  Garming-Legert K; Tour G; Sugars R; von Bahr L; Davies LC; Le Blanc K
• Review: TRENDS IN BIOTECHNOLOGY. 2015;33(12):735-746

  Possibilities in Germ Cell Research: An Engineering Insight

  Esfandiari F; Mashinchian O; Ashtiani MK; Ghanian MH; Hayashi K; Saei AA; Mahmoudi M; Baharvand H
• Article: IMMUNOLOGY LETTERS. 2015;168(2):140-146

  Mesenchymal stromal cells and the innate immune response

  Le Blanc K; Davies LC
• Journal article: GIGASCIENCE. 2015;4:40

  Tentacle: distributed quantification of genes in metagenomes

  Boulund F; Sjogren A; Kristiansson E
• Article: SCIENTIFIC REPORTS. 2015;5:16423

  Adaptation to acetaminophen exposure elicits major changes in expression and distribution of the hepatic proteome.

  Eakins R; Walsh J; Randle L; Jenkins RE; Schuppe-Koistinen I; Rowe C; Starkey Lewis P; Vasieva O; Prats N; Brillant N; Auli M; Bayliss M; Webb S; Rees JA; Kitteringham NR; Goldring CE; Park BK
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2015;112(46):14348-14353

  Maternal testosterone exposure increases anxiety-like behavior and impacts the limbic system in the offspring

  Hu M; Richard JE; Maliqueo M; Kokosar M; Fornes R; Benrick A; Jansson T; Ohlsson C; Wu X; Skibicka KP; Stener-Victorin E
• Article: STEM CELLS TRANSLATIONAL MEDICINE. 2015;4(11):1283-1293

  Oral Mucosal Lamina Propria-Progenitor Cells Exert Antibacterial Properties via the Secretion of Osteoprotegerin and Haptoglobin

  Board-Davies E; Moses R; Sloan A; Stephens P; Davies LC
• Article: FOOD SCIENCE OF ANIMAL RESOURCES. 2015;35(5):692-702

  Quantitative Proteogenomics and the Reconstruction of the Metabolic Pathway in Lactobacillus mucosae LM1

  Pajarillo EAB; Kim SH; Lee J-Y; Valeriano VDV; Kang D-K
• Article: JOURNAL OF IMMUNOLOGY. 2015;195(7):3472-3481

  Human Mucosa-Associated Invariant T Cells Accumulate in Colon Adenocarcinomas but Produce Reduced Amounts of IFN-γ

  Sundstrom P; Ahlmanner F; Akeus P; Sundquist M; Alsen S; Yrlid U; Borjesson L; Sjoling A; Gustavsson B; Wong SBJ; Quiding-Jarbrink M
• Article: SCIENTIFIC REPORTS. 2015;5:14333

  Dormant phages of Helicobacter pylori reveal distinct populations in Europe

  Vale FF; Vadivelu J; Oleastro M; Breurec S; Engstrand L; Perets TT; Megraud F; Lehours P
• Conference publication: 2015;:539-540

  Application of a systematic exoproteogenomic profiling workflow on lactobacillus mucosae LM1

  Valeriano VD; Lee J; Kang D-K
• Review: CONTRAST MEDIA & MOLECULAR IMAGING. 2015;10(5):329-355

  Superparamagnetic iron oxide nanoparticles for in vivo molecular and cellular imaging

  Sharifi S; Seyednejad H; Laurent S; Atyabi F; Saei AA; Mahmoudi M
• Article: PHYTOCHEMISTRY. 2015;117:98-106

  Flavonoids from Piper delineatum modulate quorum-sensing-regulated phenotypes in Vibrio harveyi

  Martin-Rodriguez AJ; Ticona JC; Jimenez IA; Flores N; Fernandez JJ; Bazzocchi IL
• Article: CLINICAL AND EXPERIMENTAL ALLERGY. 2015;45(9):1419-1429

  Gut microbiome and innate immune response patterns in IgE-associated eczema

  West CE; Ryden P; Lundin D; Engstrand L; Tulic MK; Prescott SL
• Article: CLINICAL GASTROENTEROLOGY AND HEPATOLOGY. 2015;13(9):1592-600.e1

  Increase in the Prevalence of Atrophic Gastritis Among Adults Age 35 to 44 Years Old in Northern Sweden Between 1990 and 2009

  Song H; Held M; Sandin S; Rautelin H; Eliasson M; Soderberg S; Hallmans G; Engstrand L; Nyren O; Ye W
• Article: JOURNAL OF EPIDEMIOLOGY AND COMMUNITY HEALTH. 2015;69(8):769-774

  Fifty moves a year: is there an association between joint physical custody and psychosomatic problems in children?

  Bergstrom M; Fransson E; Modin B; Berlin M; Gustafsson PA; Hjern A
• Letter: JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION. 2015;61(1):e4

  Exclusive Enteral Nutrition Does Not Normalize Gut Microflora Function in Pediatric Perianal Crohn Disease

  Tjellstrom B; Stenhammar L; Magnusson K-E; Midtvedt T; Norin E; Sundqvist T; Hogberg L
• Article: ALIMENTARY PHARMACOLOGY & THERAPEUTICS. 2015;42(1):71-83

  Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD

  Casen C; Vebo HC; Sekelja M; Hegge FT; Karlsson MK; Ciemniejewska E; Dzankovic S; Froyland C; Nestestog R; Engstrand L; Munkholm P; Nielsen OH; Rogler G; Simren M; Ohman L; Vatn MH; Rudi K
• Article: ENVIRONMENTAL MICROBIOLOGY. 2015;17(7):2459-2476

  Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

  Lindh MV; Sjöstedt J; Andersson AF; Baltar F; Hugerth LW; Lundin D; Muthusamy S; Legrand C; Pinhassi J
• Article: CURRENT ORGANIC CHEMISTRY. 2015;19(11):982-990

  Biomedical Applications of Superparamagnetic Nanoparticles in Molecular Scale

  Rahman M; Saei AA; Amiri H; Mahmoudi M
• Article: LAKARTIDNINGEN. 2015;112:DF7I

  [Underlying dysbiosis may be the cause of some forms of IBS. Patients were free of symptoms after the administration of microbiota].

  Benno P; Befrits R; Berstad A; Dahlgren A-L; Norin E; Midtvedt T
• Journal article: SYSTEMATIC AND APPLIED MICROBIOLOGY. 2015;38(4):246-257

  Proteotyping: Proteomic characterization, classification and identification of microorganisms - A prospectus

  Karlsson R; Gonzales-Siles L; Boulund F; Svensson-Stadler L; Skovbjerg S; Karlsson A; Davidson M; Hulth S; Kristiansson E; Moore ERB
• Article: ACS SYNTHETIC BIOLOGY. 2015;4(5):644-654

  Engineering Escherichia coli into a Protein Delivery System for Mammalian Cells

  Reeves AZ; Spears WE; Du J; Tan KY; Wagers AJ; Lesser CF
• Article: JOURNAL OF NATURAL PRODUCTS. 2015;78(4):712-721

  Oxasqualenoids from Laurencia viridis: Combined Spectroscopic-Computational Analysis and Antifouling Potential

  Cen-Pacheco F; Santiago-Benitez AJ; Garcia C; Alvarez-Mendez SJ; Martin-Rodriguez AJ; Norte M; Martin VS; Gavin JA; Fernandez JJ; Hernandez Daranas A
• Review: EXPERT REVIEW OF VACCINES. 2015;14(4):551-560

  Implications of enterotoxigenic Escherichia coli genomics for vaccine development

  Sjoling A; von Mentzer A; Svennerholm A-M
• Article: EXPERIMENTAL DERMATOLOGY. 2015;24(4):241-244

  Psoriasis is not an autoimmune disease?

  Fry L; Baker BS; Powles AV; Engstrand L
• Journal article: GASTROENTEROLOGY. 2015;148(4):s-715

  Mo1802 Intestinal Dysbiosis in Collagenous Colitis

  Carstens A; Dicksved J; Nelson R; Andreasson A; Bohr J; Tysk C; Agreus L; Engstrand L; Halfvarson J
• Article: SCIENTIFIC REPORTS. 2015;5:9027

  Genome wide expression profiling of p53 regulated miRNAs in neuroblastoma

  Rihani A; Van Goethem A; Ongenaert M; De Brouwer S; Volders P-J; Agarwal S; De Preter K; Mestdagh P; Shohet J; Speleman F; Vandesompele J; Van Maerken T
• Article: BIRTH-ISSUES IN PERINATAL CARE. 2015;42(1):78-85

  A Comparison of Maternal Attitudes to Breastfeeding in Public and the Association with Breastfeeding Duration in Four European Countries: Results of a Cohort Study

  Scott JA; Kwok YY; Synnott K; Bogue J; Amarri S; Norin E; Gil A; Edwards CA
• Article: HUMAN REPRODUCTION. 2015;30(3):692-700

  Placental STAT3 signaling is activated in women with polycystic ovary syndrome

  Maliqueo M; Poromaa IS; Vanky E; Fornes R; Benrick A; Akerud H; Stridsklev S; Labrie F; Jansson T; Stener-Victorin E
• Article: JOURNAL OF PSYCHIATRY & NEUROSCIENCE. 2015;40(2):126-133

  Increased levels of IL-6 in the cerebrospinal fluid of patients with chronic schizophrenia - significance for activation of the kynurenine pathway

  Schwieler L; Larsson MK; Skogh E; Kegel ME; Orhan F; Abdelmoaty S; Finn A; Bhat M; Samuelsson M; Lundberg K; Dahl M-L; Sellgren C; Schuppe-Koistinen I; Svensson CI; Erhardt S; Engberg G
• Article: MICROBIOLOGICAL RESEARCH. 2015;172:34-40

  Detection of major diarrheagenic bacterial pathogens by multiplex PCR panels

  Sjoling A; Sadeghipoorjahromi L; Novak D; Tobias J
• Article: SCIENTIFIC REPORTS. 2015;5:8508

  No difference in small bowel microbiota between patients with irritable bowel syndrome and healthy controls

  Dlugosz A; Winckler B; Lundin E; Zakikhany K; Sandstrom G; Ye W; Engstrand L; Lindberg G
• Article: PLATELETS. 2015;26(2):132-137

  In vitro assessment of platelet concentrates with multiple electrode aggregometry

  Hakimi CS; Hesse C; Walllen H; Boulund F; Grahn A; Jeppsson A
• Article: HUMAN PATHOLOGY. 2015;46(2):277-283

  Colonic spirochetosis is associated with colonic eosinophilia and irritable bowel syndrome in a general population in Sweden

  Walker MM; Talley NJ; Inganas L; Engstrand L; Jones MP; Nyhlin H; Agreus L; Kjellstrom L; Ost A; Andreasson A
• Article: SCIENCE. 2015;347(6220):1260419

  Tissue-based map of the human proteome

  Uhlen M; Fagerberg L; Hallstroem BM; Lindskog C; Oksvold P; Mardinoglu A; Sivertsson A; Kampf C; Sjoestedt E; Asplund A; Olsson I; Edlund K; Lundberg E; Navani S; Szigyarto CA-K; Odeberg J; Djureinovic D; Takanen JO; Hober S; Alm T; Edqvist P-H; Berling H; Tegel H; Mulder J; Rockberg J; Nilsson P; Schwenk JM; Hamsten M; von Feilitzen K; Forsberg M; Persson L; Johansson F; Zwahlen M; von Heijne G; Nielsen J; Ponten F
• Article: JOURNAL OF BACTERIOLOGY. 2015;197(2):392-403

  Allele Variants of Enterotoxigenic Escherichia coli Heat-Labile Toxin Are Globally Transmitted and Associated with Colonization Factors

  Joffre E; von Mentzer A; Abd El Ghany M; Oezguen N; Savidge T; Dougan G; Svennerholm A-M; Sjoling A
• Article: GUT PATHOGENS. 2015;7:10

  Draft genomes of four enterotoxigenic Escherichia coli (ETEC) clinical isolates from China and Bangladesh

  Liu F; Yang X; Wang Z; Nicklasson M; Qadri F; Yi Y; Zhu Y; Lv N; Li J; Zhang R; Guo H; Zhu B; Sjoling A; Hu Y
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2015;26:28062

  Factors affecting infant gut microbiota and possible consequences for health.

  Eggesbø M; Mandal S; Midtvedt T
• Editorial comment: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2015;26:27908

  GUT IN FOCUS: CONCLUDING REMARKS What did we learn today?

  Midtvedt T
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2015;26:27638

  Experience with cultivated microbiota transplant: ongoing treatment of Clostridium difficile patients in Sweden.

  Norin E
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2015;26:27637

  Is irritable bowel syndrome a dysbiotic bowel syndrome?

  Benno P; Befrits R; Norin E; Berstad A; Dahlgren A-L; Midtvedt T; Hellström PM
• Article: CLINICAL PROTEOMICS. 2015;12(1):10

  A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers

  Mahboob S; Ahn SB; Cheruku HR; Cantor D; Rennel E; Fredriksson S; Edfeldt G; Breen EJ; Khan A; Mohamedali A; Muktadir MG; Ranganathan S; Tan S-H; Nice E; Baker MS
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2015;26:26878

  Approaches to studying and manipulating the enteric microbiome to improve autism symptoms.

  Frye RE; Slattery J; MacFabe DF; Allen-Vercoe E; Parker W; Rodakis J; Adams JB; Krajmalnik-Brown R; Bolte E; Kahler S; Jennings J; James J; Cerniglia CE; Midtvedt T
• Article: MICROBIOME. 2015;3:18

  Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome

  Lilja HE; Wefer H; Nystrom N; Finkel Y; Engstrand L
• Review: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2015;26:25877

  Manipulating the gut microbiota to maintain health and treat disease

  Scott KP; Antoine J-M; Midtvedt T; van Hemert S
• Corrigendum: PLOS ONE. 2015;10(1):e0117636

  Correction: Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia.

  PLOS ONE Staff
• Article: CANCER CELL INTERNATIONAL. 2015;15:76

  Inhibition of CDK4/6 as a novel therapeutic option for neuroblastoma

  Rihani A; Vandesompele J; Speleman F; Van Maerken T
• Article: FRONTIERS IN HUMAN NEUROSCIENCE. 2015;9:365

  Brain MR spectroscopy in autism spectrum disorder- the GABA excitatory/inhibitory imbalance theory revisited

  Brix MK; Ersland L; Hugdahl K; Gruner R; Posserud M-B; Hammar A; Craven AR; Noeske R; Evans CJ; Walker HB; Midtvedt T; Beyer MK
• Review: NANOMEDICINE. 2015;10(18):2931-2952

  Nanotoxicology: advances and pitfalls in research methodology

  Azhdarzadeh M; Saei AA; Sharifi S; Hajipour MJ; Alkilany AM; Sharifzadeh M; Ramazani F; Laurent S; Mashaghi A; Mahmoudi M
• Article: PLOS ONE. 2015;10(4):e0123652

  From Broad-Spectrum Biocides to Quorum Sensing Disruptors and Mussel Repellents: Antifouling Profile of Alkyl Triphenylphosphonium Salts

  Martin-Rodriguez AJ; Babarro JMF; Lahoz F; Sanson M; Martin VS; Norte M; Fernandez JJ
• Conference publication: GASTROENTEROLOGY. 2015;148(4):S715

  Intestinal Dysbiosis in Collagenous Colitis

  Carstens A; Dicksved J; Nelson R; Andreasson A; Bohr J; Tysk C; Agreus L; Engstrand L; Halfvarson J
• Conference publication: HELICOBACTER. 2015;20:128

  HUMAN FAECAL MICROBIOTA AND RESISTANCE TO CAMPYLOBACTER INFECTION

  Kampmann C; Dicksved J; Engstrand L; Rautelin H
• Corrigendum: CELL. 2015;160(1-2):351

  Skeletal Muscle PGC-1α1 Modulates Kynurenine Metabolism and Mediates Resilience to Stress-Induced Depression (vol 159, pg 33, 2014)

  Agudelo LZ; Femenia T; Orhan F; Porsmyr-Palmertz M; Goiny M; Martinez-Redondo V; Correia JC; Izadi M; Bhat M; Schuppe-Koistinen I; Pettersson A; Ferreira DMS; Krook A; Barres R; Zierath JR; Erhardt S; Lindskog M; Ruas JL
• Article: NATURE GENETICS. 2014;46(12):1321-1326

  Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

  von Mentzer A; Connor TR; Wieler LH; Semmler T; Iguchi A; Thomson NR; Rasko DA; Joffre E; Corander J; Pickard D; Wiklund G; Svennerholm A-M; Sjoling A; Dougan G
• Article: FEMS MICROBIOLOGY ECOLOGY. 2014;90(3):791-801

  Impact of lifestyle on the gut microbiota of healthy infants and their mothers - the ALADDIN birth cohort

  Hesla HM; Stenius F; Jaderlund L; Nelson R; Engstrand L; Alm J; Dicksved J
• Article: MARINE DRUGS. 2014;12(11):5503-5526

  Inhibition of Bacterial Quorum Sensing by Extracts from Aquatic Fungi: First Report from Marine Endophytes

  Martin-Rodriguez AJ; Reyes F; Martin J; Perez-Yepez J; Leon-Barrios M; Couttolenc A; Espinoza C; Trigos A; Martin VS; Norte M; Fernandez JJ
• Article: PEDIATRIC BLOOD & CANCER. 2014;61(10):1867-1870

  Lack of Association between MDM2 Promoter SNP309 and Clinical Outcome in Patients with Neuroblastoma

  Rihani A; Van Maerken T; De Wilde B; Zeka F; Laureys G; Norga K; Tonini GP; Coco S; Versteeg R; Noguera R; Schulte JH; Eggert A; Stallings RL; Speleman F; Vandesompele J
• Article: SCANDINAVIAN JOURNAL OF PSYCHOLOGY. 2014;55(5):433-439

  Mental health in Swedish children living in joint physical custody and their parents' life satisfaction: A cross-sectional study

  Bergstrom M; Fransson E; Hjern A; Kohler L; Wallby T
• Article: CELL. 2014;159(1):33-45

  Skeletal Muscle PGC-1α1 Modulates Kynurenine Metabolism and Mediates Resilience to Stress-Induced Depression

  Agudelo LZ; Femenia T; Orhan F; Porsmyr-Palmertz M; Goiny M; Martinez-Redondo V; Correia JC; Izadi M; Bhat M; Schuppe-Koistinen I; Pettersson AT; Ferreira DMS; Krook A; Barres R; Zierath JR; Erhardt S; Lindskog M; Ruas JL
• Article: MBIO. 2014;5(5):e01212-e01214

  Susceptibility to Campylobacter Infection Is Associated with the Species Composition of the Human Fecal Microbiota

  Dicksved J; Ellstrom P; Engstrand L; Rautelin H
• Article: LAKARTIDNINGEN. 2014;111(37):1518-1520

  [Investigation of dyspepsia in Swedish primary health care can become care more effective. Health economic analysis of two management strategies].

  Agréus L; Lööf L; Norlund A; Engstrand L
• Article: APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY. 2014;174(2):667-681

  Inhibition of Survivin Restores the Sensitivity of Breast Cancer Cells to Docetaxel and Vinblastine

  Ghanbari P; Mohseni M; Tabasinezhad M; Yousefi B; Saei AA; Sharifi S; Rashidi MR; Samadi N
• Review: EXPERT OPINION ON DRUG DELIVERY. 2014;11(9):1449-1470

  Superparamagnetic iron oxide nanoparticles for delivery of therapeutic agents: opportunities and challenges

  Laurent S; Saei AA; Behzadi S; Panahifar A; Mahmoudi M
• Article: STEM CELLS. 2014;32(9):2430-2442

  Do Cryopreserved Mesenchymal Stromal Cells Display Impaired Immunomodulatory and Therapeutic Properties?

  Moll G; Alm JJ; Davies LC; von Bahr L; Heldring N; Stenbeck-Funke L; Hamad OA; Hinsch R; Ignatowicz L; Locke M; Lonnies H; Lambris JD; Teramura Y; Nilsson-Ekdahl K; Nilsson B; Le Blanc K
• Corrigendum: JOURNAL OF APPLIED MICROBIOLOGY. 2014;117(3):919

  In vitro evaluation of the mucin-adhesion ability and probiotic potential of Lactobacillus mucosae LM1 (vol 117, pg 485, 2014)

  Valeriano VD; Parungao-Balolong MM; Kang D-K
• Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2014;80(16):5116-5123

  DegePrime, a Program for Degenerate Primer Design for Broad-Taxonomic-Range PCR in Microbial Ecology Studies

  Hugerth LW; Wefer HA; Lundin S; Jakobsson HE; Lindberg M; Rodin S; Engstrand L; Andersson AF
• Article: JOURNAL OF APPLIED MICROBIOLOGY. 2014;117(2):485-497

  In vitro evaluation of the mucin-adhesion ability and probiotic potential of Lactobacillus mucosae LM1

  Valeriano VD; Parungao-Balolong MM; Kang D-K
• Article: CANCER IMMUNOLOGY IMMUNOTHERAPY. 2014;63(8):807-819

  Altered chemokine production and accumulation of regulatory T cells in intestinal adenomas of APC^Min/+ mice

  Akeus P; Langenes V; von Mentzer A; Yrlid U; Sjoling A; Saksena P; Raghavan S; Quiding-Jarbrink M
• Article: JOURNAL OF NANOPARTICLE RESEARCH. 2014;16(8):2521

  Fe₃O₄ nanoparticles engineered for plasmid DNA delivery to Escherichia coli

  Saei AA; Barzegari A; Majd MH; Asgari D; Omidi Y
• Article: HUMAN REPRODUCTION. 2014;29(7):1526-1535

  Lifestyle intervention up-regulates gene and protein levels of molecules involved in insulin signaling in the endometrium of overweight/obese women with polycystic ovary syndrome

  Ujvari D; Hulchiy M; Calaby A; Nybacka A; Bystrom B; Hirschberg AL
• Article: PLOS PATHOGENS. 2014;10(7):e1004234

  A Repetitive DNA Element Regulates Expression of the Helicobacter pylori Sialic Acid Binding Adhesin by a Rheostat-like Mechanism

  Aberg A; Gideonsson P; Vallstrom A; Olofsson A; Ohman C; Rakhimova L; Boren T; Engstrand L; Brannstrom K; Arnqvist A
• Article: JOURNAL OF MICROBIOLOGY. 2014;52(7):626-629

  Identification of high-specificity H-NS binding site in LEE5 promoter of enteropathogenic Esherichia coli (EPEC).

  Bhat AP; Shin M; Choy HE
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2014;111(25):e2586-e2595

  DNA looping-dependent autorepression of LEE1 P1 promoters by Ler in enteropathogenic Escherichia coli (EPEC).

  Bhat A; Shin M; Jeong J-H; Kim H-J; Lim H-J; Rhee JH; Paik S-Y; Takeyasu K; Tobe T; Yen H; Lee G; Choy HE
• Article: JOURNAL OF EXPERIMENTAL BOTANY. 2014;65(9):2533-2543

  Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis.

  Lindner A-C; Lang D; Seifert M; Podlešáková K; Novák O; Strnad M; Reski R; von Schwartzenberg K
• Article: CLINICAL AND EXPERIMENTAL ALLERGY. 2014;44(6):842-850

  Low gut microbiota diversity in early infancy precedes asthma at school age

  Abrahamsson TR; Jakobsson HE; Andersson AF; Bjorksten B; Engstrand L; Jenmalm MC
• Article: ORAL ONCOLOGY. 2014;50(5):491-497

  Human papillomavirus prevalence is high in oral samples of patients with tonsillar and base of tongue cancer

  Nordfors C; Vlastos A; Du J; Ahrlund-Richter A; Tertipis N; Grun N; Romanitan M; Haeggblom L; Roosaar A; Dahllof G; Dona MG; Benevolo M; Ramqvist T; Munck-Wikland E; Dalianis T
• Article: WOUND REPAIR AND REGENERATION. 2014;22(3):399-405

  Identification of a transcriptional signature for the wound healing continuum

  Peake MA; Caley M; Giles PJ; Wall I; Enoch S; Davies LC; Kipling D; Thomas DW; Stephens P
• Article: ALIMENTARY PHARMACOLOGY & THERAPEUTICS. 2014;39(10):1156-1160

  The effects of oats on the function of gut microflora in children with coeliac disease

  Tjellstrom B; Stenhammar L; Sundqvist T; Falth-Magnusson K; Hollen E; Magnusson K-E; Norin E; Midtvedt T; Hogberg L
• Journal article: GASTROENTEROLOGY. 2014;146(5):s-698

  Mo1944 Eosinophils and Lymphoid Follicles Are Histological Markers for Colonic Spirochaetosis

  Walker MM; Talley NJ; Jones MP; Andreasson A; Engstrand L; Inganas L; Nyhlin H; Kjellstrom L; Agreus L
• Journal article: BMC MICROBIOLOGY. 2014;14:102

  On the influence of the culture conditions in bacterial antifouling bioassays and biofilm properties: Shewanella algae, a case study

  Martin-Rodriguez AJ; Gonzalez-Orive A; Hernandez-Creus A; Morales A; Dorta-Guerra R; Norte M; Martin VS; Fernandez JJ
• Article: GUT. 2014;63(4):559-566

  Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section

  Jakobsson HE; Abrahamsson TR; Jenmalm MC; Harris K; Quince C; Jernberg C; Bjoerksten B; Engstrand L; Andersson AF
• Review: CANCER LETTERS. 2014;344(2):157-165

  Pharmacologic activation of wild-type p53 by nutlin therapy in childhood cancer

  Van Maerken T; Rihani A; Van Goethem A; De Paepe A; Speleman F; Vandesompele J
• Article: LIVER INTERNATIONAL. 2014;34(3):367-378

  Keratin-18 and microRNA-122 complement alanine aminotransferase as novel safety biomarkers for drug-induced liver injury in two human cohorts

  Thulin P; Nordahl G; Gry M; Yimer G; Aklillu E; Makonnen E; Aderaye G; Lindquist L; Mattsson CM; Ekblom B; Antoine DJ; Park BK; Linder S; Harrill AH; Watkins PB; Glinghammar B; Schuppe-Koistinen I
• Article: ANTICANCER RESEARCH. 2014;34(2):893-898

  Molecular Typing of Human Herpesvirus 8 Isolates from Patients with Kaposi's Sarcoma in Hungary

  Oetvoes R; Juhasz A; Szalai E; Ujvari D; Oetvoes K; Szabo K; Remenyik E; Szekely L; Gergely L; Konya J
• Article: BMC PSYCHOLOGY. 2014;2(1):46

  Exploring salivary cortisol and recurrent pain in mid-adolescents living in two homes.

  Fransson E; Folkesson L; Bergström M; Östberg V; Lindfors P
• Article: PLOS ONE. 2014;9(4):e94271

  Evaluation of Patterns of Liver Toxicity in Patients on Antiretroviral and Anti-Tuberculosis Drugs: A Prospective Four Arm Observational Study in Ethiopian Patients

  Yimer G; Gry M; Amogne W; Makonnen E; Habtewold A; Petros Z; Aderaye G; Schuppe-Koistinen I; Lindquist L; Aklillu E
• Article: PLOS ONE. 2014;9(10):e109091

  Expressed Repeat Elements Improve RT-qPCR Normalization across a Wide Range of Zebrafish Gene Expression Studies

  Vanhauwaert S; Van Peer G; Rihani A; Janssens E; Rondou P; Lefever S; De Paepe A; Coucke PJ; Speleman F; Vandesompele J; Willaert A
• Article: INTERNATIONAL JOURNAL OF TRYPTOPHAN RESEARCH. 2014;7:15-22

  Imbalanced kynurenine pathway in schizophrenia.

  Kegel ME; Bhat M; Skogh E; Samuelsson M; Lundberg K; Dahl M-L; Sellgren C; Schwieler L; Engberg G; Schuppe-Koistinen I; Erhardt S
• Review: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2014;25

  Epigenomic programing: a future way to health?

  Shenderov BA; Midtvedt T
• Article: PLOS ONE. 2014;9(12):e114696

  CASP8 SNP D302H (rs1045485) Is Associated with Worse Survival in MYCN-Amplified Neuroblastoma Patients

  Rihani A; De Wilde B; Zeka F; Laureys G; Francotte N; Tonini GP; Coco S; Versteeg R; Noguera R; Schulte JH; Eggert A; Stallings RL; Speleman F; Vandesompele J; Van Maerken T
• Article: PLOS ONE. 2014;9(4):e95192

  Homogenous 96-Plex PEA Immunoassay Exhibiting High Sensitivity, Specificity, and Excellent Scalability

  Assarsson E; Lundberg M; Holmquist G; Bjoerkesten J; Thorsen SB; Ekman D; Eriksson A; Dickens ER; Ohlsson S; Edfeldt G; Andersson A-C; Lindstedt P; Stenvang J; Gullberg M; Fredriksson S
• Review: FUTURE MICROBIOLOGY. 2014;9(5):639-656

  Shrinkage of the human core microbiome and a proposal for launching microbiome biobanks

  Barzegari A; Saeedi N; Saei AA
• Article: PLOS ONE. 2014;9(4):e95567

  Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

  Hugerth LW; Muller EEL; Hu YOO; Lebrun LAM; Roume H; Lundin D; Wilmes P; Andersson AF
• Article: MICROBIAL PATHOGENESIS. 2014;66:5-13

  Cholera toxin expression by El Tor Vibrio cholerae in shallow culture growth conditions

  Cobaxin M; Martinez H; Ayala G; Holmgren J; Sjoling A; Sanchez J
• Article: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2014;2014:bau080

  miRBase Tracker: keeping track of microRNA annotation changes

  Van Peer G; Lefever S; Anckaert J; Beckers A; Rihani A; Van Goethem A; Volders P-J; Zeka F; Ongenaert M; Mestdagh P; Vandesompele J
• Conference publication: PLANTA MEDICA. 2014;80(16):1437

  Flavonoids as quorum sensing inhibitors: A promising strategy to fight against bacteria

  Bazzocchi IL; Martin-Rodriguez AJ; Ticona JC; Gomez IC; Marzaro E; Jimenez IA; Flores N; Benjumea D; Martin VS; Fernandez-Castro J
• Conference publication: GASTROENTEROLOGY. 2014;146(5):S698

  Eosinophils and Lymphoid Follicles Are Histological Markers for Colonic Spirochaetosis

  Walker MM; Talley NJ; Jones MP; Andreasson A; Engstrand L; Inganas L; Nyhlin H; Kjellstrom L; Agreus L
• Journal article: FRONTIERS IN MICROBIOLOGY. 2014;5:648

  Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India.

  Bengtsson-Palme J; Boulund F; Fick J; Kristiansson E; Larsson DGJ
• Journal article: INTERNATIONAL JOURNAL OF TRYPTOPHAN RESEARCH. 2014;7:15-22

  Imbalanced Kynurenine Pathway in Schizophrenia

  Kegel ME; Bhat M; Skogh E; Samuelsson M; Lundberg K; Dahl M-L; Sellgren C; Schwieler L; Engberg G; Schuppe-Koistinen I; Erhardt S
• Letter: AMERICAN JOURNAL OF GASTROENTEROLOGY. 2013;108(12):1931-1932

  Hepatocellular Carcinoma and Smoking: Oblivion or Contempt? Response

  Midtvedt T; Norin E; Benno P; Atti-La D
• Article: CLINICAL MICROBIOLOGY AND INFECTION. 2013;19(12):E559-E567

  Oral bacterial community dynamics in paediatric patients with malignancies in relation to chemotherapy-related oral mucositis: a prospective study

  Ye Y; Carlsson G; Agholme MB; Wilson JAL; Roos A; Henriques-Normark B; Engstrand L; Modeer T; Putsep K
• Journal article: ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS. 2013;12:34

  Functional verification of computationally predicted qnr genes

  Flach C-F; Boulund F; Kristiansson E; Larsson DGJ
• Article: NATURE METHODS. 2013;10(11):1063-1067

  The need for transparency and good practices in the qPCR literature

  Bustin SA; Benes V; Garson J; Hellemans J; Huggett J; Kubista M; Mueller R; Nolan T; Pfaffl MW; Shipley G; Wittwer CT; Schjerling P; Day PJ; Abreu M; Aguado B; Beaulieu J-F; Beckers A; Bogaert S; Browne JA; Carrasco-Ramiro F; Ceelen L; Ciborowski K; Cornillie P; Coulon S; Cuypers A; De Brouwer S; De Ceuninck L; De Craene J; De Naeyer H; De Spiegelaere W; Deckers K; Dheedene A; Durinck K; Ferreira-Teixeira M; Fieuw A; Gallup JM; Gonzalo-Flores S; Goossens K; Heindryckx F; Herring E; Hoenicka H; Icardi L; Jaggi R; Javad F; Karampelias M; Kibenge F; Kibenge M; Kumps C; Lambertz I; Lammens T; Markey A; Messiaen P; Mets E; Morais S; Mudarra-Rubio A; Nakiwala J; Nelis H; Olsvik PA; Perez-Novo C; Plusquin M; Remans T; Rihani A; Rodrigues-Santos P; Rondou P; Sanders R; Schmidt-Bleek K; Skovgaard K; Smeets K; Tabera L; Toegel S; Van Acker T; Van den Broeck W; Van der Meulen J; Van Gele M; Van Peer G; Van Poucke M; Van Roy N; Vergult S; Wauman J; Tshuikina-Wiklander M; Willems E; Zaccara S; Zeka F; Vandesompele J
• Article: CANCER IMMUNOLOGY IMMUNOTHERAPY. 2013;62(11):1687-1695

  Expression of the chemokine decoy receptor D6 is decreased in colon adenocarcinomas

  Langenes V; Svensson H; Borjesson L; Gustavsson B; Bemark M; Sjoling A; Quiding-Jarbrink M
• Article: FEMS MICROBIOLOGY LETTERS. 2013;348(1):74-78

  Vibration and glycerol-mediated plasmid DNA transformation for Escherichia coli

  Shanehbandi D; Saei AA; Zarredar H; Barzegari A
• Article: JOURNAL OF MEDICAL MICROBIOLOGY. 2013;62(Pt 11):1697-1706

  Prevalence, seasonality and severity of disease caused by pathogenic Escherichia coli in children with diarrhoea in Bolivia

  Gonzales L; Joffre E; Rivera R; Sjoling A; Svennerholm A-M; Iniguez V
• Review: JOURNAL OF CANCER RESEARCH AND THERAPEUTICS. 2013;9(4):556-563

  Sphingosin 1-phosphate contributes in tumor progression

  Tabasinezhad M; Samadi N; Ghanbari P; Mohseni M; Saei AA; Sharifi S; Saeedi N; Pourhassan A
• Article: INFLAMMATORY BOWEL DISEASES. 2013;19(11):2433-2439

  Serum IL-17A in Newly Diagnosed Treatment-Naive Patients with Ulcerative Colitis Reflects Clinical Disease Severity and Predicts the Course of Disease

  Ohman L; Dahlen R; Isaksson S; Sjoling A; Wick M-J; Sjovall H; Van Oudenhove L; Simren M; Strid H
• Article: BMC PUBLIC HEALTH. 2013;13:868

  Living in two homes-a Swedish national survey of wellbeing in 12 and 15 year olds with joint physical custody

  Bergstrom M; Modin B; Fransson E; Rajmil L; Berlin M; Gustafsson PA; Hjern A
• Review: JOURNAL OF CHEMOTHERAPY. 2013;25(4):193-212

  Probiotics and clinical effects: is the number what counts?

  Bertazzoni E; Donelli G; Midtvedt T; Nicoli J; Sanz Y
• Article: EUROPEAN JOURNAL OF CANCER. 2013;49(11):2522-2530

  CD8⁺ and CD4⁺ tumour infiltrating lymphocytes in relation to human papillomavirus status and clinical outcome in tonsillar and base of tongue squamous cell carcinoma

  Nordfors C; Grun N; Tertipis N; Ahrlund-Richter A; Haeggblom L; Sivars L; Du J; Nyberg T; Marklund L; Munck-Wikland E; Nasman A; Ramqvist T; Dalianis T
• Review: BRITISH JOURNAL OF DERMATOLOGY. 2013;169(1):47-52

  Is chronic plaque psoriasis triggered by microbiota in the skin?

  Fry L; Baker BS; Powles AV; Fahlen A; Engstrand L
• Letter: GUT. 2013;62(6):952-954

  The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study

  Quince C; Lundin EE; Andreasson AN; Greco D; Rafter J; Talley NJ; Agreus L; Andersson AF; Engstrand L; D'Amato M
• Journal article: GASTROENTEROLOGY. 2013;144(5):s-35

  155 Serum IL-17A in Newly Diagnosed Treatment-Naïve Ulcerative Colitis Patients Reflects Disease Severity and Predicts the Course of Disease

  Ohman L; Dahlen R; Isaksson S; Sjöling A; Wick MJ; Sjovall H; Simren M; Van Oudenhove L; Strid H
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2013;51(4):1219-1225

  Molecular Characterization of Enterotoxigenic Escherichia coli Isolates Recovered from Children with Diarrhea during a 4-Year Period (2007 to 2010) in Bolivia

  Gonzales L; Sanchez S; Zambrana S; Iniguez V; Wiklund G; Svennerholm A-M; Sjoling A
• Article: JOURNAL OF APPLIED MICROBIOLOGY. 2013;114(4):1223-1229

  Presence of enterotoxigenic Escherichia coli in biofilms formed in water containers in poor households coincides with epidemic seasons in Dhaka

  Ahmed D; Islam MS; Begum YA; Janzon A; Qadri F; Sjoling A
• Article: FASEB JOURNAL. 2013;27(4):1394-1403

  Inhibition of bacterial thioredoxin reductase: an antibiotic mechanism targeting bacteria lacking glutathione

  Lu J; Vlamis-Gardikas A; Kandasamy K; Zhao R; Gustafsson TN; Engstrand L; Hoffner S; Engman L; Holmgren A
• Article: JOURNAL OF MEDICINAL FOOD. 2013;16(2):147-154

  Soy Protein, Genistein, and Daidzein Improve Serum Paraoxonase Activity and Lipid Profiles in Rheumatoid Arthritis in Rats

  Mohammadshahi M; Haidari F; Saei AA; Rashidi B; Mahboob S; Rashidi M-R
• Article: BEST PRACTICE & RESEARCH CLINICAL GASTROENTEROLOGY. 2013;27(1):39-45

  Helicobacter pylori and the gastric microbiota

  Engstrand L; Lindberg M
• Article: ACTA PAEDIATRICA. 2013;102(2):129-136

  Intestinal microbial profiles in extremely preterm infants with and without necrotizing enterocolitis

  Normann E; Fahlen A; Engstrand L; Lilja HE
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2013;24

  Faecal short-chain fatty acid pattern in childhood coeliac disease is normalised after more than one year's gluten-free diet.

  Tjellström B; Högberg L; Stenhammar L; Fälth-Magnusson K; Magnusson K-E; Norin E; Sundqvist T; Midtvedt T
• Letter: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. 2013;131(1):248-249

  Gut microbiota diversity and atopic disease: Does breast-feeding play a role? Reply

  Abrahamsson TR; Jakobsson HE; Andersson AF; Bjorksten B; Engstrand L; Jenmalm MC
• Article: TRAC-TRENDS IN ANALYTICAL CHEMISTRY. 2013;42:216-227

  Electrochemical biosensors for glucose based on metal nanoparticles

  Saei AA; Najafi-Marandi P; Abhari A; de la Guardia M; Dolatabadi JEN
• Article: PLOS ONE. 2013;8(8):e71776

  Effective Alu Repeat Based RT-Qpcr Normalization in Cancer Cell Perturbation Experiments

  Rihani A; Van Maerken T; Pattyn F; Van Peer G; Beckers A; De Brouwer S; Kumps C; Mets E; Van der Meulen J; Rondou P; Leonelli C; Mestdagh P; Speleman F; Vandesompele J
• Article: BIOMED RESEARCH INTERNATIONAL. 2013;2013:202497-12

  Prediction of clinically relevant safety signals of nephrotoxicity through plasma metabolite profiling.

  Mattes WB; Kamp HG; Fabian E; Herold M; Krennrich G; Looser R; Mellert W; Prokoudine A; Strauss V; van Ravenzwaay B; Walk T; Naraoka H; Omura K; Schuppe-Koistinen I; Nadanaciva S; Bush ED; Moeller N; Ruiz-Noppinger P; Piccoli SP
• Article: PLOS ONE. 2013;8(9):e74069

  Alkaline pH Is a Signal for Optimal Production and Secretion of the Heat Labile Toxin, LT in Enterotoxigenic Escherichia Coli (ETEC)

  Gonzales L; Ali ZB; Nygren E; Wang Z; Karlsson S; Zhu B; Quiding-Jarbrink M; Sjoling A
• Article: PLOS ONE. 2013;8(6):e66074

  Increase of Faecal Tryptic Activity Relates to Changes in the Intestinal Microbiome: Analysis of Crohn's Disease with a Multidisciplinary Platform

  Midtvedt T; Zabarovsky E; Norin E; Bark J; Gizatullin R; Kashuba V; Ljungqvist O; Zabarovska V; Mollby R; Ernberg I
• Article: PLOS ONE. 2013;8(5):e63027

  Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population

  Guy L; Jernberg C; Norling JA; Ivarsson S; Hedenstrom I; Melefors O; Liljedahl U; Engstrand L; Andersson SGE
• Article: PLOS COMPUTATIONAL BIOLOGY. 2013;9(5):e1003042

  Novel Developmental Analyses Identify Longitudinal Patterns of Early Gut Microbiota that Affect Infant Growth

  White RA; Bjornholt JV; Baird DD; Midtvedt T; Harris JR; Pagano M; Hide W; Rudi K; Moen B; Iszatt N; Peddada SD; Eggesbo M
• Article: PLOS ONE. 2013;8(4):e60670

  Composition of the Vaginal Microbiota in Women of Reproductive Age - Sensitive and Specific Molecular Diagnosis of Bacterial Vaginosis Is Possible?

  Shipitsyna E; Roos A; Datcu R; Hallen A; Fredlund H; Jensen JS; Engstrand L; Unemo M
• Article: JOURNAL OF APPLIED MICROBIOLOGY. 2013;114(1):121-133

  Molecular cloning, characterization and comparison of bile salt hydrolases from Lactobacillus johnsonii PF01

  Chae JP; Valeriano VD; Kim G-B; Kang D-K
• Letter: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2012;109(52):E3627-E3628

  Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4

  Guy L; Jernberg C; Ivarsson S; Hedenstrom I; Engstrand L; Andersson SGE
• Journal article: BMC GENOMICS. 2012;13:695

  A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences

  Boulund F; Johnning A; Pereira MB; Larsson DGJ; Kristiansson E
• Article: INFECTION AND IMMUNITY. 2012;80(12):4364-4373

  In Vivo Sequence Variation in HopZ, a Phase-Variable Outer Membrane Protein of Helicobacter pylori

  Kennemann L; Brenneke B; Andres S; Engstrand L; Meyer TF; Aebischer T; Josenhans C; Suerbaum S
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2012;47(12):1454-1459

  Effect of exclusive enteral nutrition on gut microflora function in children with Crohn's disease

  Tjellstrom B; Hogberg L; Stenhammar L; Magnusson K-E; Midtvedt T; Norin E; Sundqvist T
• Article: INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE. 2012;30(5):1241-1249

  Isoform-specific alanine aminotransferase measurement can distinguish hepatic from extrahepatic injury in humans

  Rafter I; Graberg T; Kotronen A; Strommer L; Mattson CM; Kim RW; Ehrenborg E; Andersson HB; Yki-Jarvinen H; Schuppe-Koistinen I; Ekblom B; Cotgreave I; Glinghammar B
• Article: MOLECULAR BIOLOGY REPORTS. 2012;39(11):9931-9939

  Haematococcus as a promising cell factory to produce recombinant pharmaceutical proteins

  Saei AA; Ghanbari P; Barzegari A
• Article: MOLECULAR MICROBIOLOGY. 2012;86(3):707-719

  Gene silencing by H-NS from distal DNA site.

  Shin M; Lagda AC; Lee JW; Bhat A; Rhee JH; Kim J-S; Takeyasu K; Choy HE
• Editorial comment: TOXICOLOGICAL SCIENCES. 2012;129(2):249-255

  SOT/EUROTOX debate: biomarkers from blood and urine will replace traditional histopathological evaluation to determine adverse responses.

  Boekelheide K; Schuppe-Koistinen I
• Article: EMERGING INFECTIOUS DISEASES. 2012;18(9):1468-1471

  Prevalence of Oral Human Papillomavirus Infection among Youth, Sweden

  Du J; Nordfors C; Ahrlund-Richter A; Sobkowiak M; Romanitan M; Nasman A; Andersson S; Ramqvist T; Dalianis T
• Article: INTERNATIONAL JOURNAL OF CANCER. 2012;131(5):1124-1130

  Survival in patients with human papillomavirus positive tonsillar cancer in relation to treatment

  Attner P; Nasman A; Du J; Hammarstedt L; Ramqvist T; Lindholm J; Munck-Wikland E; Dalianis T; Marklund L
• Article: FUTURE MICROBIOLOGY. 2012;7(9):1037-1046

  The microbiome: the forgotten organ of the astronaut's body - probiotics beyond terrestrial limits

  Saei AA; Barzegari A
• Article: JOURNAL OF BACTERIOLOGY. 2012;194(17):4766

  Genome Sequence of Lactobacillus mucosae LM1, Isolated from Piglet Feces

  Lee JH; Valeriano VD; Shin Y-R; Chae JP; Kim G-B; Ham J-S; Chun J; Kang D-K
• Article: JOURNAL OF ENVIRONMENTAL MANAGEMENT. 2012;105:53-60

  Degradation and detoxification of 4-nitrophenol by advanced oxidation technologies and bench-scale constructed wetlands

  Herrera-Melian JA; Martin-Rodriguez AJ; Ortega-Mendez A; Arana J; Dona-Rodriguez JM; Perez-Pena J
• Doctoral thesis: 2012

  Occurrence of human papillomaviruses (HPV) types in HPV related cancer and in the genital and oral tracts of young adults

  Juan D
• Article: STEM CELLS AND DEVELOPMENT. 2012;21(9):1478-1487

  Oral Mucosal Progenitor Cells Are Potently Immunosuppressive in a Dose-Independent Manner

  Davies LC; Lonnies H; Locke M; Sundberg B; Rosendahl K; Gotherstrom C; Le Blanc K; Stephens P
• Article: BIOLOGICAL TRACE ELEMENT RESEARCH. 2012;147(1-3):217-225

  Aldehyde and Xanthine Oxidase Activities in Tissues of Streptozotocin-Induced Diabetic Rats: Effects of Vitamin E and Selenium Supplementation

  Ghaffari T; Nouri M; Saei AA; Rashidi M-R
• Article: AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY. 2012;67(6):506-514

  Negative Emotions and Cytokines in Maternal and Cord Serum at Preterm Birth

  Fransson E; Dubicke A; Bystrom B; Ekman-Ordeberg G; Hjelmstedt A; Lekander M
• Article: RESEARCH IN VETERINARY SCIENCE. 2012;92(3):501-508

  Manipulation of the gut microbiota in C57BL/6 mice changes glucose tolerance without affecting weight development and gut mucosal immunity

  Bech-Nielsen GV; Hansen CHF; Hufeldt MR; Nielsen DS; Aasted B; Vogensen FK; Midtvedt T; Hansen AK
• Conference publication: TOXICOLOGY LETTERS. 2012;211:S48

  Qualification of new biomarkers for drug-induced liver injury in a human cohort

  Thulin P; Gry M; Nordahl G; Yimer G; Linder S; Aklillu E; Glinghammar B; Schuppe-Koistinen I
• Article: TOXICOLOGICAL SCIENCES. 2012;127(1):150-158

  The Development of In Vitro Culture Methods to Characterize Primary T-Cell Responses to Drugs

  Faulkner L; Martinsson K; Santoyo-Castelazo A; Cederbrant K; Schuppe-Koistinen I; Powell H; Tugwood J; Naisbitt DJ; Park BK
• Article: FUTURE MICROBIOLOGY. 2012;7(5):571-575

  Designing probiotics with respect to the native microbiome

  Barzegari A; Saei AA
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2012;47(5):548-552

  Fecal transplant against relapsing Clostridium difficile-associated diarrhea in 32 patients

  Jorup-Ronstrom C; Hakanson A; Sandell S; Edvinsson O; Midtvedt T; Persson A-K; Norin E
• Article: EUROPEAN JOURNAL OF HUMAN GENETICS. 2012;20(5):534-539

  17q24.2 microdeletions: a new syndromal entity with intellectual disability, truncal obesity, mood swings and hallucinations

  Vergult S; Dauber A; Delle Chiaie B; Van Oudenhove E; Simon M; Rihani A; Loeys B; Hirschhorn J; Pfotenhauer J; Phillips JAIII; Mohammed S; Ogilvie C; Crolla J; Mortier G; Menten B
• Article: JOURNAL OF VIROLOGY. 2012;86(8):4701-4707

  Latency Type-Dependent Modulation of Epstein-Barr Virus-Encoded Latent Membrane Protein 1 Expression by Type I Interferons in B Cells

  Salamon D; Adori M; Ujvari D; Wu L; Kis LL; Madapura HS; Nagy N; Klein G; Klein E
• Article: CYTOKINE. 2012;57(3):360-371

  Type I interferons directly down-regulate BCL-6 in primary and transformed germinal center B cells: Differential regulation in B cell lines derived from endemic or sporadic Burkitt's lymphoma

  Salmon D; Adori M; He M; Bonelt P; Severinson E; Kis LL; Wu L; Ujvari D; Leveau B; Nagy N; Klein G; Klein E
• Doctoral thesis: 2012

  Preterm birth : parents' experiences, affect, stress and inflammatory markers

  Fransson E
• Letter: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2012;47(2):251-252

  Major alterations in metabolic activity of intestinal microflora in Crohn's disease

  Benno P; Bark J; Collinder E; Hellstrom PM; Midtvedt T; Norin E
• Article: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. 2012;129(2):434-440.e2

  Low diversity of the gut microbiota in infants with atopic eczema

  Abrahamsson TR; Jakobsson HE; Andersson AF; Bjorksten B; Engstrand L; Jenmalm MC
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2012;109(5):1512-1517

  Soluble factors produced by activated CD4⁺ T cells modulate EBV latency

  Nagy N; Adori M; Rasul A; Heuts F; Salamon D; Ujvari D; Madapura HS; Leveau B; Klein G; Klein E
• Article: PLOS ONE. 2012;7(10):e46538

  Prevalence of Human Papillomavirus (HPV) in Oesophageal Squamous Cell Carcinoma in Relation to Anatomical Site of the Tumour

  Lofdahl HE; Du J; Nasman A; Andersson E; Rubio CA; Lu Y; Ramqvist T; Dalianis T; Lagergren J; Dahlstrand H
• Article: PLOS ONE. 2012;7(4):e36239

  Human Papillomavirus (HPV) 16 E6 Variants in Tonsillar Cancer in Comparison to Those in Cervical Cancer in Stockholm, Sweden

  Du J; Nordfors C; Nasman A; Sobkowiak M; Romanitan M; Dalianis T; Ramqvist T
• Article: PLOS ONE. 2012;7(8):e42418

  Real time identification of drug-induced liver injury (DILI) through daily screening of ALT results: a prospective pilot cohort study.

  M'Kada H; Perazzo H; Munteanu M; Ngo Y; Ramanujam N; Fautrel B; Imbert-Bismut F; Ratziu V; Schuppe-Koistinen I; Leblond V; Delattre JY; Samson Y; Caen OL; Bricaire F; Khayat D; Pierrot-Deseilligny C; Herson S; Amoura Z; Tilleul P; Deckmyn O; Coriat P; Delpech VN; Boulogne P; Bonnefont-Rousselot D; Poynard T; Drug Induced Liver Injury Groupe Hospitalier Pitié; Safer and Faster Evidence-based Translation Consor
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2012;23

  The gut: a triggering place for autism - possibilities and challenges.

  Midtvedt T
• Article: PLOS ONE. 2012;7(5):e36378

  Human Gastric Mucins Differently Regulate Helicobacter pylori Proliferation, Gene Expression and Interactions with Host Cells

  Skoog EC; Sjoling A; Navabi N; Holgersson J; Lundin SB; Linden SK
• Article: PLOS ONE. 2012;7(4):e35827

  Expression of Colonization Factor CS5 of Enterotoxigenic Escherichia coli (ETEC) Is Enhanced In Vivo and by the Bile Component Na Glycocholate Hydrate

  Nicklasson M; Sjoling A; von Mentzer A; Qadri F; Svennerholm A-M
• Article: ARCHIVES OF DERMATOLOGICAL RESEARCH. 2012;304(1):15-22

  Comparison of bacterial microbiota in skin biopsies from normal and psoriatic skin

  Fahlen A; Engstrand L; Baker BS; Powles A; Fry L
• Conference publication: INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY. 2012;302:28-29

  In vivo sequence variation in HopZ, a phase variable outer membrane protein of Helicobacter pylori

  Kennemann L; Brenneke B; Andres S; Engstrand L; Meyer TF; Aebischer T; Josenhans C; Suerbaum S
• Article: MBIO. 2011;2(6):e00239-e00211

  Genome Sequencing Reveals a Phage in Helicobacter pylori

  Lehours P; Vale FF; Bjursell MK; Melefors O; Advani R; Glavas S; Guegueniat J; Gontier E; Lacomme S; Matos AA; Menard A; Megraud F; Engstrand L; Andersson AF
• Article: JOURNAL OF CLINICAL IMMUNOLOGY. 2011;31(6):936-945

  Mutations in the ELANE Gene are Associated with Development of Periodontitis in Patients with Severe Congenital Neutropenia

  Ye Y; Carlsson G; Wondimu B; Fahlen A; Karlsson-Sjoberg J; Andersson M; Engstrand L; Yucel-Lindberg T; Modeer T; Putsep K
• Review: BIOCHIMICA ET BIOPHYSICA ACTA: INTERNATIONAL JOURNAL OF BIOCHEMISTRY AND BIOPHYSICS. 2011;1810(12):1262-1271

  Thioredoxin glutathione reductase: Its role in redox biology and potential as a target for drugs against neglected diseases

  Prast-Nielsen S; Huang H-H; Williams DL
• Article: ANAEROBE. 2011;17(6):431-432

  How normal is a "normal" flora in animal or man?

  Norin E
• Article: JOURNAL OF GASTROINTESTINAL AND LIVER DISEASES. 2011;20(4):349-354

  Performance of routine Helicobacter pylori tests in patients with atrophic gastritis.

  Sudraba A; Daugule I; Rudzite D; Funka K; Tolmanis I; Engstrand L; Janciauskas D; Jonaitis L; Kiudelis G; Kupcinskas L; Ivanauskas A; Leja M
• Article: JOURNAL OF PROTEOME RESEARCH. 2011;10(11):4925-4934

  Plasma profiling reveals human fibulin-1 as candidate marker for renal impairment.

  Neiman M; Hedberg JJ; Dönnes PR; Schuppe-Koistinen I; Hanschke S; Schindler R; Uhlén M; Schwenk JM; Nilsson P
• Article: LAKARTIDNINGEN. 2011;108(44):2232

  [Helicobacter pylori--a friend in need].

  Benno P; Dahlgren A-L; Midtvedt T
• Article: ACTA ONCOLOGICA. 2011;50(8):1215-1219

  Prevalence of Human Papillomavirus (HPV) types in cervical cancer 2003-2008 in Stockholm, Sweden, before public HPV vaccination

  Du J; Nasman A; Carlson JW; Ramqvist T; Dalianis T
• Article: PRENATAL DIAGNOSIS. 2011;31(11):1082-1085

  Free fetal DNA levels in patients at risk of preterm labour.

  Illanes S; Gomez R; Fornes R; Figueroa-Diesel H; Schepeler M; Searovic P; Serra R; Perez A; Nien JK
• Article: GASTROENTEROLOGY. 2011;141(3):918-928

  The Complement Regulator CD46 Is Bactericidal to Helicobacter pylori and Blocks Urease Activity

  Basmarke-Wehelie R; Sjolinder H; Jurkowski W; Elofsson A; Arnqvist A; Engstrand L; Hagner M; Wallin E; Guan N; Kuranasekera H; Aro H; Jonsson A-B
• Article: NATURE PROTOCOLS. 2011;6(9):1367-1376

  Titration-free 454 sequencing using Y adapters

  Zheng Z; Advani A; Melefors O; Glavas S; Nordstrom H; Ye W; Engstrand L; Andersson AF
• Article: REGULATORY TOXICOLOGY AND PHARMACOLOGY. 2011;60(3):290-295

  What are the best reference values for a normal serum alanine transaminase activity (ALT)? Impact on the presumed prevalence of drug induced liver injury (DILI).

  M'Kada H; Munteanu M; Perazzo H; Ngo Y; Ramanujam N; Imbert-Bismut F; Ratziu V; Bonnefont-Rousselot D; Souberbielle B; Schuppe-Koistinen I; Poynard T; DILI group of the SAFE-T consortium
• Conference publication: 2011;:525-527

  A molecular systems analysis of HOX PPI networks in hematopoiesis and leukemogenesis

  Capiroso MR; Endriga MA; Valeriano VDV; Deocaris CC
• Article: JOURNAL OF IMMUNOLOGICAL METHODS. 2011;370(1-2):14-23

  Novel antigen design for the generation of antibodies to G-protein-coupled receptors

  Larsson K; Hofstrom C; Lindskog C; Hansson M; Angelidou P; Hokfelt T; Uhlen M; Wernerus H; Graslund T; Hober S
• Review: DRUG DISCOVERY TODAY. 2011;16(13-14):600-608

  A generic operational strategy to qualify translational safety biomarkers.

  Matheis K; Laurie D; Andriamandroso C; Arber N; Badimon L; Benain X; Bendjama K; Clavier I; Colman P; Firat H; Goepfert J; Hall S; Joos T; Kraus S; Kretschmer A; Merz M; Padro T; Planatscher H; Rossi A; Schneiderhan-Marra N; Schuppe-Koistinen I; Thomann P; Vidal J-M; Molac B
• Article: RESEARCH ON AGING. 2011;33(4):444-464

  Social Support Networks and Expectations for Aging in Place and Moving

  Tang F; Lee Y
• Conference publication: SEXUALLY TRANSMITTED INFECTIONS. 2011;87:A302

  COMPOSITION OF VAGINAL MICROBIOTA IN BACTERIAL VAGINOSIS PATIENTS AND HEALTHY WOMEN: BASIS FOR GENETIC DIAGNOSIS OF BACTERIAL VAGINOSIS?

  Unemo M; Fahlen A; Datcu R; Hallen A; Fredlund H; Jensen J; Engstrand L
• Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2011;410(2):276-281

  The TCP4 transcription factor of Arabidopsis blocks cell division in yeast at G1→S transition.

  Aggarwal P; Padmanabhan B; Bhat A; Sarvepalli K; Sadhale PP; Nath U
• Article: INTERNATIONAL JOURNAL OF CANCER. 2011;128(12):2892-2897

  Human papillomavirus and survival in patients with base of tongue cancer

  Attner P; Du J; Nasman A; Hammarstedt L; Ramqvist T; Lindholm J; Marklund L; Dalianis T; Munck-Wikland E
• Article: MOLECULAR CANCER THERAPEUTICS. 2011;10(6):983-993

  Functional Analysis of the p53 Pathway in Neuroblastoma Cells Using the Small-Molecule MDM2 Antagonist Nutlin-3

  Van Maerken T; Rihani A; Dreidax D; De Clercq S; Yigit N; Marine J-C; Westermann F; De Paepe A; Vandesompele J; Speleman F
• Article: MICROBIOLOGY-SGM. 2011;157(Pt 5):1385-1392

  Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres

  Fallani M; Amarri S; Uusijarvi A; Adam R; Khanna S; Aguilera M; Gil A; Vieites JM; Norin E; Young D; Scott JA; Dore J; Edwards CA
• Article: FREE RADICAL BIOLOGY AND MEDICINE. 2011;50(9):1114-1123

  Inhibition of thioredoxin reductase 1 by porphyrins and other small molecules identified by a high-throughput screening assay

  Prast-Nielsen S; Dexheimer TS; Schultz L; Stafford WC; Cheng Q; Xu J; Jadhav A; Arner ESJ; Simeonov A
• Article: EXPERIMENTAL CELL RESEARCH. 2011;317(6):849-858

  Impaired IFN-γ production after stimulation with bacterial components by natural killer cells from gastric cancer patients

  Lindgren A; Yun C-H; Sjoling A; Berggren C; Sun J-B; Jonsson E; Holmgren J; Svennerholm A-M; Lundin SB
• Article: INNATE IMMUNITY. 2011;17(2):191-203

  Interferon-gamma secretion is induced in IL-12 stimulated human NK cells by recognition of Helicobacter pylori or TLR2 ligands

  Lindgren A; Pavlovic V; Flach C-F; Sjoling A; Lundin S
• Journal article: BRAZILIAN JOURNAL OF INFECTIOUS DISEASES. 2011;15(2):132-137

  Enterotoxins, colonization factors, serotypes and antimicrobial resistance of enterotoxigenic Escherichia coli (ETEC) strains isolated from hospitalized children with diarrhea in Bolivia

  Rodas C; Mamani R; Blanco J; Blanco JE; Wiklund G; Svennerholm A-M; Sjöling Å; Iniguez V
• Article: BIRTH-ISSUES IN PERINATAL CARE. 2011;38(1):10-16

  Antenatal Depressive Symptoms and Preterm Birth: A Prospective Study of a Swedish National Sample

  Fransson E; Ortenstrand A; Hjelmstedt A
• Article: BRAZILIAN JOURNAL OF INFECTIOUS DISEASES. 2011;15(2):132-137

  Enterotoxins, colonization factors, serotypes and antimicrobial resistance of enterotoxigenic Escherichia coli (ETEC) strains isolated from hospitalized children with diarrhea in Bolivia

  Rodas C; Mamani R; Blanco J; Blanco JE; Wiklund G; Svennerholm A-M; Sjoling A; Iniguez V
• Article: FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY. 2011;61(2):168-178

  Helicobacter pylori defines local immune response through interaction with dendritic cells

  Andres S; Schmidt H-MA; Mitchell H; Rhen M; Maeurer M; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 2011;43(2):115-121

  Pre-vaccination prevalence of human papillomavirus types in the genital tract of 15-23-year-old women attending a youth health clinic in Stockholm, Sweden

  Ramqvist T; Du J; Lunden M; Ahrlund-Richter S; Ferreira J; Marions L; Sparen P; Andersson S; Dalianis T
• Article: ENVIRONMENTAL MICROBIOLOGY REPORTS. 2011;3(1):112-117

  Flagella mediate attachment of enterotoxigenic Escherichia coli to fresh salad leaves

  Shaw RK; Berger CN; Pallen MJ; Sjoeling A; Frankel G
• Article: APMIS. 2011;119(1):17-35

  Development of gut microbiota in infants not exposed to medical interventions

  Eggesbo M; Moen B; Peddada S; Baird D; Rugtveit J; Midtvedt T; Bushel PR; Sekelja M; Rudi K
• Article: PLOS ONE. 2011;6(5):e19723

  Rapid Screening of Complex DNA Samples by Single-Molecule Amplification and Sequencing

  Huang J; Zheng Z; Andersson AF; Engstrand L; Ye W
• Article: FRONTIERS IN MICROBIOLOGY. 2011;2:166

  Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila

  Derrien M; Van Baarlen P; Hooiveld G; Norin E; Muller M; de Vos WM
• Article: PLOS ONE. 2011;6(11):e18313

  Clonal Relatedness of Enterotoxigenic Escherichia coli (ETEC) Strains Expressing LT and CS17 Isolated from Children with Diarrhoea in La Paz, Bolivia

  Rodas C; Klena JD; Nicklasson M; Iniguez V; Sjoling A
• Article: PLOS ONE. 2011;6(10):e26957

  Accuracy and Cut-Off Values of Pepsinogens I, II and Gastrin 17 for Diagnosis of Gastric Fundic Atrophy: Influence of Gastritis

  Nasrollahzadeh D; Aghcheli K; Sotoudeh M; Shakeri R; Persson EC; Islami F; Kamangar F; Abnet CC; Boffetta P; Engstrand L; Dawsey SM; Malekzadeh R; Ye W
• Article: PLOS ONE. 2011;6(10):e26442

  A Method for Metagenomics of Helicobacter pylori from Archived Formalin-Fixed Gastric Biopsies Permitting Longitudinal Studies of Carcinogenic Risk

  Zheng Z; Andersson AF; Ye W; Nyren O; Normark S; Engstrand L
• Editorial comment: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 2011;22:8225

  Helicobacter pylori - a friend in times of need?

  Dahlgren A-L; Benno P; Midtvedt T
• Article: BIOIMPACTS. 2011;1(3):161-170

  Comparison of the Effects of Genistein and Daidzein with Dexamethasone and Soy Protein on Rheumatoid Arthritis in Rats

  Mohammad-Shahi M; Haidari F; Rashidi B; Saei AA; Mahboob S; Rashidi M-R
• Article: JOURNAL OF DENTAL RESEARCH. 2010;89(12):1407-1413

  'Young' Oral Fibroblasts Are Geno/Phenotypically Distinct

  Enoch S; Peake MA; Wall I; Davies L; Farrier J; Giles P; Kipling D; Price P; Moseley R; Thomas D; Stephens P
• Article: FREE RADICAL BIOLOGY AND MEDICINE. 2010;49(11):1765-1778

  Noble metal targeting of thioredoxin reductase - covalent complexes with thioredoxin and thioredoxin-related protein of 14 kDa triggered by cisplatin

  Prast-Nielsen S; Cebula M; Pader I; Arner ESJ
• Article: GASTROENTEROLOGY. 2010;139(6):1844-1854.e1

  A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes

  Willing BP; Dicksved J; Halfvarson J; Andersson AF; Lucio M; Zheng Z; Jarnerot G; Tysk C; Jansson JK; Engstrand L
• Article: HELICOBACTER. 2010;15(5):430-437

  Expression of Helicobacter pylori TonB protein in transgenic Arabidopsis thaliana: toward production of vaccine antigens in plants.

  Kalbina I; Engstrand L; Andersson S; Strid A
• Article: COMPARATIVE MEDICINE. 2010;60(5):336-342

  Variation in the Gut Microbiota of Laboratory Mice Is Related to Both Genetic and Environmental Factors

  Hufeldt MR; Nielsen DS; Vogensen FK; Midtvedt T; Hansen AK
• Letter: NEUROGASTROENTEROLOGY AND MOTILITY. 2010;22(10):1147

  Assessment of microbial fermentation products in fecal samples

  Valeur J; Norin E; Midtvedt T; Berstad A
• Article: LABORATORY ANIMALS. 2010;44(4):283-289

  Family relationship of female breeders reduce the systematic inter-individual variation in the gut microbiota of inbred laboratory mice

  Hufeldt MR; Nielsen DS; Vogensen FK; Midtvedt T; Hansen AK
• Article: EUROPEAN JOURNAL OF EPIDEMIOLOGY. 2010;25(10):741-750

  Use of tobacco products and gastrointestinal morbidity: an endoscopic population-based study (the Kalixanda study)

  Aro P; Ronkainen J; Storskrubb T; Vieth M; Engstrand L; Johansson S-E; Bolling-Sternevald E; Bolinder G; Alving K; Talley NJ; Agreus L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2010;45(9):1059-1062

  Screening-detected and symptomatic untreated celiac children show similar gut microflora-associated characteristics

  Tjellstrom B; Stenhammar L; Hogberg L; Falth-Magnusson K; Magnusson K-E; Midtvedt T; Sundqvist T; Norin E
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2010;45(9):1048-1058

  Twelve-month endoscopic and histological analysis following proton-pump inhibitor-based triple therapy in Helicobacter pylori-positive patients with gastric ulcers.

  Tulassay Z; Stolte M; Engstrand L; Butruk E; Malfertheiner P; Dítê P; Tchernev K; Wong BCY; Gottlow M; Eklund S; Wrangstadh M; Herszényi L; Nagy P; HELIX Study Investigators
• Article: CLINICAL PHARMACOLOGY & THERAPEUTICS. 2010;88(2):260-262

  A systematic approach to preclinical and clinical safety biomarker qualification incorporating Bradford Hill's principles of causality association.

  Chetty RK; Ozer JS; Lanevschi A; Schuppe-Koistinen I; McHale D; Pears JS; Vonderscher J; Sistare FD; Dieterle F
• Article: BIOMARKERS. 2010;15(5):424-435

  Application of Dolichos biflorus in immunoassay detection of kidney collecting duct biomarkers.

  Sourial S; Searchfield L; Schuppe-Koistinen I; Betton GR; Riccardi D; Price SA
• Article: JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION. 2010;51(1):77-84

  Intestinal Microbiota of 6-week-old Infants Across Europe: Geographic Influence Beyond Delivery Mode, Breast-feeding, and Antibiotics

  Fallani M; Young D; Scott J; Norin E; Amarri S; Adam R; Aguilera M; Khanna S; Gil A; Edwards CA; Dore J
• Article: NUCLEIC ACIDS RESEARCH. 2010;38(13):e137

  Titration-free massively parallel pyrosequencing using trace amounts of starting material

  Zheng Z; Advani A; Melefors O; Glavas S; Nordstrom H; Ye W; Engstrand L; Andersson AF
• Article: ECOLOGICAL ENGINEERING. 2010;36(7):891-899

  Hybrid constructed wetlands for wastewater treatment and reuse in the Canary Islands

  Herrera Melian JA; Martin Rodriguez AJ; Arana J; Gonzalez Diaz O; Gonzalez Henriquez JJ
• Article: ONCOGENE. 2010;29(24):3583-3592

  An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours

  Mestdagh P; Fredlund E; Pattyn F; Rihani A; Van Maerken T; Vermeulen J; Kumps C; Menten B; De Preter K; Schramm A; Schulte J; Noguera R; Schleiermacher G; Janoueix-Lerosey I; Laureys G; Powel R; Nittner D; Marine J-C; Ringner M; Speleman F; Vandesompele J
• Article: INTERNATIONAL JOURNAL OF CANCER. 2010;126(12):2879-2884

  The role of human papillomavirus in the increased incidence of base of tongue cancer

  Attner P; Du J; Nasman A; Hammarstedt L; Ramqvist T; Lindholm J; Marklund L; Dalianis T; Munck-Wikland E
• Article: JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY. 2010;136(6):839-846

  Expression of IL-13Rα2 in liver cancer cells and its effect on targeted therapy of liver cancer

  Hou L; Du J; Wang J; Liu Y; Sun W; Zheng Y; Zhang L; Hu H; Dai X; Guan W; Ma Y; Hong T
• Article: ANAEROBE. 2010;16(3):311-313

  Intestinal microflora functions in laboratory mice claimed to harbor a "normal" intestinal microflora. Is the SPF concept running out of date?

  Norio E; Midtvedt T
• Article: STEM CELLS AND DEVELOPMENT. 2010;19(6):819-830

  A Multipotent Neural Crest-Derived Progenitor Cell Population Is Resident Within the Oral Mucosa Lamina Propria

  Davies LC; Locke M; Webb RDJ; Roberts JT; Langley M; Thomas DW; Archer CW; Stephens P
• Article: EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES. 2010;29(4):439-451

  The cag PAI is intact and functional but HP0521 varies significantly in Helicobacter pylori isolates from Malaysia and Singapore

  Schmidt H-MA; Andres S; Nilsson C; Kovach Z; Kaakoush NO; Engstrand L; Goh K-L; Fock KM; Forman D; Mitchell H
• Article: HELICOBACTER. 2010;15(2):114-125

  Type I Restriction-Modification Loci Reveal High Allelic Diversity in Clinical Helicobacter pylori Isolates

  Andres S; Skoglund A; Nilsson C; Krabbe M; Bjorkholm B; Engstrand L
• Article: JOURNAL OF APPLIED MICROBIOLOGY. 2010;108(4):1441-1449

  Survival and gene expression of enterotoxigenic Escherichia coli during long-term incubation in sea water and freshwater

  Lothigius A; Sjoling A; Svennerholm A-M; Bolin I
• Review: LAKARTIDNINGEN. 2010;107(13-14):904-906

  [Prebiotics is food for the intestinal flora--for good and bad].

  Benno P; Midtvedt T; Norin E; Zachrisson K
• Review: LAKARTIDNINGEN. 2010;107(13-14):900-903

  [Intestinal flora--the biggest organ of the body. Unstable ecosystem which can easily topple].

  Benno P; Blomquist L; Ernberg I; Midtvedt T; Möllby R; Norin E
• Article: PLOS ONE. 2010;5(3):e9836

  Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome

  Jakobsson HE; Jernberg C; Andersson AF; Sjolund-Karlsson M; Jansson JK; Engstrand L
• Article: MOLECULAR MEDICINE. 2010;16(3-4):129-136

  Changes in the expression of insulin signaling pathway molecules in endometria from polycystic ovary syndrome women with or without hyperinsulinemia.

  Fornes R; Ormazabal P; Rosas C; Gabler F; Vantman D; Romero C; Vega M
• Article: JOURNAL OF REPRODUCTIVE IMMUNOLOGY. 2010;84(2):176-185

  Pro-inflammatory and anti-inflammatory cytokines in human preterm and term cervical ripening

  Dubicke A; Fransson E; Centini G; Andersson E; Bystrom B; Malmstrom A; Petraglia F; Sverremark-Ekstrom E; Ekman-Ordeberg G
• Article: ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2010;396(5):1681-1689

  Time-resolved biomarker discovery in 1H-NMR data using generalized fuzzy Hough transform alignment and parallel factor analysis.

  Alm E; Torgrip RJO; Aberg KM; Schuppe-Koistinen I; Lindberg J
• Article: EMERGING INFECTIOUS DISEASES. 2010;16(1):143-146

  Enterotoxigenic Escherichia coli Multilocus Sequence Types in Guatemala and Mexico

  Nicklasson M; Klena J; Rodas C; Bourgeois AL; Torres O; Svennerholim A-M; Sjoeling A
• Article: JOURNAL OF REPRODUCTIVE IMMUNOLOGY. 2010;84(1):86-94

  High-mobility group box protein 1 and its signalling receptors in human preterm and term cervix

  Dubicke A; Andersson P; Fransson E; Andersson E; Sioutas A; Malmstrom A; Sverremark-Ekstrom E; Ekman-Ordeberg G
• Article: JOURNAL OF INNATE IMMUNITY. 2010;2(3):294-302

  CD8^- Natural Killer Cells Are Greatly Enriched in the Human Gastrointestinal Tract and Have the Capacity to Respond to Bacteria

  Lindgren A; Yun CH; Lundgren A; Sjoling A; Ohman L; Svennerholm A-M; Holmgren J; Lundin SB
• Review: SCANDINAVIAN JOURNAL OF LABORATORY ANIMAL SCIENCE. 2010;37(1):43-54

  The Impact of a Germ Free Perinatal Period on the Variation in Animal Models of Human Inflammatory Diseases - A Review

  Lauritsen LFS; Hufeldt MR; Aasted B; Hansen CHF; Midtvedt T; Buschard K; Hansen AK
• Meeting abstract: GENOME BIOLOGY. 2010;11:p42

  Metagenomic study of Helicobacter pylori microdissected from archived formalin-fixed paraffin-embedded biopsy sections

  Zheng Z; Andersson AF; Ye W; Nyren O; Normark S; Engstrand L
• Conference publication: HELICOBACTER. 2010;15(4):357

  H. pylori as a live vaccine vector: screening and characterisation of clinical isolates

  Fulurija A; Sehnal M; Nilsson HO; Lu W; Himbeck R; Middleton M; Engstrand L; Marshall BJ; Benghezal M
• Article: VACCINE. 2009;28(1):270-278

  Local cytokine and inflammatory responses to candidate vaginal adjuvants in mice

  Lindqvist M; Navabi N; Jansson M; Samuelson E; Sjoling A; Orndal C; Harandi AM
• Article: BIOMARKERS. 2009;14(8):572-586

  A systems biology approach to understanding elevated serum alanine transaminase levels in a clinical trial with ximelagatran

  Andersson U; Lindberg J; Wang S; Balasubramanian R; Marcusson-Stahl M; Hannula M; Zeng C; Juhasz PJ; Kolmert J; Backstrom J; Nord L; Nilsson K; Martin S; Glinghammar B; Cederbrant K; Schuppe-Koistinen I
• Review: CELL DEATH AND DIFFERENTIATION. 2009;16(12):1563-1572

  Escape from p53-mediated tumor surveillance in neuroblastoma: switching off the p14^ARF-MDM2-p53 axis

  Van Maerken T; Vandesompele J; Rihani A; De Paepe A; Speleman F
• Article: FREE RADICAL BIOLOGY AND MEDICINE. 2009;47(11):1661-1671

  High levels of thioredoxin reductase 1 modulate drug-specific cytotoxic efficacy

  Eriksson SE; Prast-Nielsen S; Flaberg E; Szekely L; Arner ESJ
• Article: JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2009;101(22):1562-1574

  Antitumor Activity of the Selective MDM2 Antagonist Nutlin-3 Against Chemoresistant Neuroblastoma With Wild-Type p53

  Van Maerken T; Ferdinande L; Taildeman J; Lambertz I; Yigit N; Vercruysse L; Rihani A; Michaelis M; Cinatl JJ; Cuvelier CA; Marine J-C; De Paepe A; Bracke M; Speleman F; Vandesompele J
• Article: MOLECULAR & CELLULAR PROTEOMICS. 2009;8(11):2544-2554

  Recombinant Surface Proteomics as a Tool to Analyze Humoral Immune Responses in Bovines Infected by Mycoplasma mycoides Subsp mycoides Small Colony Type

  Hamsten C; Neiman M; Schwenk JM; Hamsten M; March JB; Persson A
• Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2009;284(44):30383-30394

  Response of Gastric Epithelial Progenitors to Helicobacter pylori Isolates Obtained from Swedish Patients with Chronic Atrophic Gastritis

  Giannakis M; Backhed HK; Chen SL; Faith JJ; Wu M; Guruge JL; Engstrand L; Gordon JI
• Article: JOURNAL OF MEDICINAL CHEMISTRY. 2009;52(20):6474-6483

  Structure Mechanism Insights and the Role of Nitric Oxide Donation Guide the Development of Oxadiazole-2-Oxides as Therapeutic Agents against Schistosomiasis

  Rai G; Sayed AA; Lea WA; Luecke HF; Chakrapani H; Prast-Nielsen S; Jadhav A; Leister W; Shen M; Inglese J; Austin CP; Keefer L; Arner ESJ; Simeonov A; Maloney DJ; Williams DL; Thomas CJ
• Article: PLOS ONE. 2009;4(10):e7297

  Is There a Link between the Lipopolysaccharide of Helicobacter pylori Gastric MALT Lymphoma Associated Strains and Lymphoma Pathogenesis?

  Lehours P; Zheng Z; Skoglund A; Megraud F; Engstrand L
• Article: JOURNAL OF DENTAL RESEARCH. 2009;88(10):916-921

  Increased Oral Fibroblast Lifespan Is Telomerase-independent

  Enoch S; Wall I; Peake M; Davies L; Farrier J; Giles P; Baird D; Kipling D; Price P; Moseley R; Thomas D; Stephens P
• Meeting abstract: RETROVIROLOGY. 2009;6:p16

  Correlate of local adjuvanticity and inflammation for experimental vaginal adjuvants in mice

  Lindqvist M; Navabi N; Jansson M; Sjoling A; Orndal C; Harandi AM
• Doctoral thesis: 2009

  Exploring thioredoxin reductase as an anticancer drug target

  Prast-Nielsen S
• Review: CLINICAL MICROBIOLOGY AND INFECTION. 2009;15(9):823-828

  How will next-generation sequencing contribute to the knowledge concerning Helicobacter pylori?

  Engstrand L
• Article: ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2009;395(1):213-223

  A solution to the 1D NMR alignment problem using an extended generalized fuzzy Hough transform and mode support.

  Alm E; Torgrip RJO; Aberg KM; Schuppe-Koistinen I; Lindberg J
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2009;47(8):2616-2619

  Risk factors for campylobacteriosis: an epidemiological surveillance study of patients and retail poultry.

  Lindmark H; Boqvist S; Ljungström M; Agren P; Björkholm B; Engstrand L
• Article: HELICOBACTER. 2009;14(4):237-247

  Presence of High Numbers of Transcriptionally Active Helicobacter pylori in Vomitus from Bangladeshi Patients Suffering from Acute Gastroenteritis

  Janzon A; Bhuiyan T; Lundgren A; Qadri F; Svennerholm A-M; Sjoling A
• Article: JOURNAL OF INFECTIOUS DISEASES. 2009;200(2):181-190

  DNA Vaccination with a Single-Plasmid Construct Coding for Viruslike Particles Protects Mice against Infection with a Highly Pathogenic Avian Influenza A Virus

  Szecsi J; Gabriel G; Edfeldt G; Michelet M; Klenk HD; Cosset F-L
• Article: INTERNATIONAL JOURNAL OF CANCER. 2009;125(2):362-366

  Incidence of human papillomavirus (HPV) positive tonsillar carcinoma in Stockholm, Sweden: An epidemic of viral-induced carcinoma?

  Nasman A; Attner P; Hammarstedt L; Do J; Eriksson M; Giraud G; Ahrlund-Richter S; Marklund L; Romanitan M; Lindquist D; Ramqvist T; Lindholm J; Sparen P; Ye W; Dahistrand H; Munck-Wikland E; Dalianis T
• Article: EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES. 2009;28(7):767-773

  Evidence of intra-familial transmission of Helicobacter pylori by PCR-based RAPD fingerprinting in Bangladesh.

  Nahar S; Kibria KMK; Hossain ME; Sultana J; Sarker SA; Engstrand L; Bardhan PK; Rahman M; Endtz HP
• Article: REPRODUCTIVE BIOLOGY AND ENDOCRINOLOGY. 2009;7:64

  Increases in norepinephrine release and ovarian cyst formation during ageing in the rat.

  Acuña E; Fornes R; Fernandois D; Garrido MP; Greiner M; Lara HE; Paredes AH
• Article: PLOS ONE. 2009;4(6):e5885

  A Changing Gastric Environment Leads to Adaptation of Lipopolysaccharide Variants in Helicobacter pylori Populations during Colonization

  Skoglund A; Backhed HK; Nilsson C; Bjorkholm B; Normark S; Engstrand L
• Article: HELICOBACTER. 2009;14(3):192-201

  FOXP3-expressing CD4⁺ T-cell Numbers Increase in Areas of Duodenal Gastric Metaplasia and are Associated to CD4⁺ T-cell Aggregates in the Duodenum of Helicobacter pylori-infected Duodenal Ulcer Patients

  Kindlund B; Sjoling A; Hansson M; Edebo A; Hansson L-E; Sjovall H; Svennerholm A-M; Lundin BS
• Published conference paper: VACCINE. 2009;27(25-26):3251-3259

  Composition of the ANTIGENome of Helicobacter pylori defined by human serum antibodies.

  Meinke A; Storm M; Henics T; Gelbmann D; Prustomersky S; Kovács Z; Minh DB; Noiges B; Stierschneider U; Berger M; von Gabain A; Engstrand L; Nagy E
• Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2009;75(10):3039-3044

  Failure To Detect Helicobacter pylori DNA in Drinking and Environmental Water in Dhaka, Bangladesh, Using Highly Sensitive Real-Time PCR Assays

  Janzon A; Sjoling A; Lothigius A; Ahmed D; Qadri F; Svennerholm A-M
• Article: ACTA PAEDIATRICA. 2009;98(5):823-827

  Faecal short chain fatty acid pattern and allergy in early childhood

  Sandin A; Braback L; Norin E; Bjorksten B
• Article: INFLAMMATORY BOWEL DISEASES. 2009;15(5):653-660

  Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease.

  Willing B; Halfvarson J; Dicksved J; Rosenquist M; Järnerot G; Engstrand L; Tysk C; Jansson JK
• Article: JOVE-JOURNAL OF VISUALIZED EXPERIMENTS. 2009;(26):1191

  Cellular toxicity of nanogenomedicine in MCF-7 cell line: MTT assay.

  Ahmadian S; Barar J; Saei AA; Fakhree MAA; Omidi Y
• Article: JOURNAL OF MEDICAL MICROBIOLOGY. 2009;58(4):509-516

  Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls

  Dicksved J; Lindberg M; Rosenquist M; Enroth H; Jansson JK; Engstrand L
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2009;47(4):1218-1220

  Development of Multiplex PCR Assays for Detection of Enterotoxigenic Escherichia coli Colonization Factors and Toxins

  Rodas C; Iniguez V; Qadri F; Wiklund G; Svennerholm A-M; Sjoeling A
• Article: GUT PATHOGENS. 2009;1(1):5

  The prevalence of the duodenal ulcer promoting gene (dupA) in Helicobacter pylori isolates varies by ethnic group and is not universally associated with disease development: a case-control study

  Schmidt H-MA; Andres S; Kaakoush NO; Engstrand L; Eriksson L; Goh K-L; Fock KM; Hilmi I; Dhamodaran S; Forman D; Mitchell H
• Article: INFECTION AND IMMUNITY. 2009;77(3):935-942

  Role of Melanin Pigment in Expression of Vibrio cholerae Virulence Factors

  Valeru SP; Rompikuntal PK; Ishikawa T; Vaitkevicius K; Sjoling A; Dolganov N; Zhu J; Schoolnik G; Wai SN
• Article: JOURNAL OF HEPATOLOGY. 2009;50(3):572-583

  The impact of CYP2E1 on the development of alcoholic liver disease as studied in a transgenic mouse model

  Butura A; Nilsson K; Morgan K; Morgan TR; French SW; Johansson I; Schuppe-Koistinen I; Ingelman-Sundberg M
• Article: WORLD JOURNAL OF GASTROENTEROLOGY. 2009;15(2):219-225

  Acute effects of Helicobacter pylori extracts on gastric mucosal blood flow in the mouse.

  Henriksnäs J; Atuma C; Phillipson M; Sandler S; Engstrand L; Holm L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2009;44(12):1416-1423

  Carbohydrate intolerance in patients with self-reported food hypersensitivity: Comparison of lactulose and glucose

  Valeur J; Morken MH; Norin E; Midtvedt T; Berstad A
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2009;44(3):339-345

  Interleukin 1-gene polymorphisms and risk of gastric cancer in Sweden

  Persson C; Engstrand L; Nyren O; Hansson L-E; Enroth H; Ekstrom A-M; Ye W
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2009;44(11):1296-1303

  Antibiotic or bacterial therapy in post-giardiasis irritable bowel syndrome

  Morken MH; Valeur J; Norin E; Midtvedt T; Nysaeter G; Berstad A
• Conference publication: CANCER RESEARCH. 2009;69

  Evaluation of plain platinum, palladium and gold salts as inhibitors of mammalian thioredoxin reductase: Implications for clinically used drugs and the development of new anticancer agents

  Prast-Nielsen S; Arner E
• Conference publication: HELICOBACTER. 2009;14(4):372

  Study of the Lipopolysaccharide of H. pylori Gastric MALT Lymphoma-Associated Strains: A Link with Lymphoma Pathogenesis?

  Lehours P; Cheng Z; Skoglund A; Megraud F; Engstrand L
• Conference publication: CANCER RESEARCH. 2009;69

  Extensive upregulation of proinflammatory cytokines in the gastric mucosa of stomach cancer patients

  Lundin S; Adamsson J; Wang S; Kindlund B; Sjoling A; Sjovall H; Hansson L-E; Pettersson S; Svennerholm A-M
• Conference publication: FREE RADICAL RESEARCH. 2009;43:63

  Drug-specific responses to cytotoxic agents mediated by high levels of thioredoxin reductase 1 in human A549 cancer cells

  Eriksson S; Prast-Nielsen S; Flaberg E; Szekely L; Arner E
• Conference publication: HELICOBACTER. 2009;14(4):335

  H-pylori Genome Sequencing Using the Roche FLX Titanium Platform; Identification of MALT Strain-Specific Markers

  Lehours P; Bjursell M; Advani R; Melefors O; Anderson A; Glavas S; Megraud F; Engstrand L
• Article: OSTEOARTHRITIS AND CARTILAGE. 2008;16(8):855-864

  Chondroitin sulphate impedes the migration of a sub-population of articular cartilage chondrocytes

  Davies LC; Blain EJ; Caterson B; Duance VC
• Article: PLOS ONE. 2008;3(7):e2836

  Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

  Andersson AF; Lindberg M; Jakobsson H; Backhed F; Nyren P; Engstrand L
• Article: INFECTION AND IMMUNITY. 2008;76(7):3304-3311

  CCL28 is increased in human Helicobacter pylori-induced gastritis and mediates recruitment of gastric immunoglobulin A-secreting cells

  Hansson M; Hermansson M; Svensson H; Elfvin A; Hansson L-E; Johnsson E; Sjoling A; Quiding-Jarbrink M
• Article: ISME JOURNAL. 2008;2(7):716-727

  Molecular analysis of the gut microbiota of identical twins with Crohn's disease.

  Dicksved J; Halfvarson J; Rosenquist M; Järnerot G; Tysk C; Apajalahti J; Engstrand L; Jansson JK
• Article: TISSUE ENGINEERING PART A. 2008;14(7):1251-1261

  The potential of IGF-1 and TGFβ1 for promoting "Adult'' articular cartilage repair:: An in vitro study

  Davies LC; Blain EJ; Gilbert SJ; Caterson B; Duance VC
• Article: EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY. 2008;20(6):526-536

  Effect of esomeprazole triple therapy on eradication rates of Helicobacter pylori, gastric ulcer healing and prevention of relapse in gastric ulcer patients.

  Tulassay Z; Stolte M; Sjölund M; Engstrand L; Butruk E; Malfertheiner P; Dite P; Tchernev K; Wong BCY; Gottlow M; Eklund S; Wrangstadh M; Nagy P
• Article: GUT. 2008;57(6):764-771

  Secreted enteric antimicrobial activity localises to the mucus surface layer

  Meyer-Hoffert U; Hornef MW; Henriques-Normark B; Axelsson L-G; Midtvedt T; Putsep K; Andersson M
• Article: METABOLOMICS. 2008;4(2):114-121

  A note on normalization of biofluid 1D ¹H-NMR data

  Torgrip RJO; Aberg KM; Alm E; Schuppe-Koistinen I; Lindberg J
• Article: JOURNAL OF CHROMATOGRAPHY A. 2008;1192(1):139-146

  Feature detection and alignment of hyphenated chromatographic-mass spectrometric data. Extraction of pure ion chromatograms using Kalman tracking.

  Aberg KM; Torgrip RJO; Kolmert J; Schuppe-Koistinen I; Lindberg J
• Article: BMC MICROBIOLOGY. 2008;8:73

  Performance of a 70-mer oligonucleotide microarray for genotyping of Campylobacter jejuni

  Rodin S; Andersson AF; Wirta V; Eriksson L; Ljungstrom M; Bjorkholm B; Lindmark H; Engstrand L
• Article: PLOS ONE. 2008;3(4):e1846

  Cell Death by SecTRAPs: Thioredoxin Reductase as a Prooxidant Killer of Cells

  Anestal K; Prast-Nielsen S; Cenas N; Arner ESJ
• Article: JOURNAL OF APPLIED MICROBIOLOGY. 2008;104(4):1128-1136

  Enterotoxigenic Escherichia coli is detectable in water samples from an endemic area by real-time PCR

  Lothigius A; Janzon A; Begum Y; Sjoling A; Qadri F; Svennerholm A-M; Bolin I
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008;105(11):4358-4363

  Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells

  Giannakis M; Chen SL; Karam SM; Engstrand L; Gordon JI
• Article: MOLECULAR BIOSYSTEMS. 2008;4(3):249-259

  Correlation network analysis for data integration and biomarker selection.

  Adourian A; Jennings E; Balasubramanian R; Hines WM; Damian D; Plasterer TN; Clish CB; Stroobant P; McBurney R; Verheij ER; Bobeldijk I; van der Greef J; Lindberg J; Kenne K; Andersson U; Hellmold H; Nilsson K; Salter H; Schuppe-Koistinen I
• Article: MICROBIAL PATHOGENESIS. 2008;44(3):246-254

  Mutations in the periplasmic chaperone leading to loss of surface expression of the colonization factor CS6 in enterotoxigenic Escherichia coli (ETEC) clinical isolates

  Nicklasson M; Sjoling A; Lebens M; Tobias J; Janzon A; Brive L; Svennerholm A-M
• Article: PHARMAZIE. 2008;63(2):113-121

  Deviations of drug solubility in water-cosolvent mixtures from the Jouyban-Acree model - effect of solute structure

  Jouyban A; Fakhree MAA; Ghafourian T; Saei AA; Acree WEJ
• Article: PLOS ONE. 2008;3(11):e3811

  Lipopolysaccharide Diversity Evolving in Helicobacter pylori Communities through Genetic Modifications in Fucosyltransferases

  Nilsson C; Skoglund A; Moran AP; Annuk H; Engstrand L; Normark S
• Article: ANNALS OF NUTRITION AND METABOLISM. 2008;52:12-14

  Intestinal cholesterol conversion in adults and elderly from four different European countries

  Norin E
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2008;43(12):1448-1455

  Serum biomarkers provide an accurate method for diagnosis of atrophic gastritis in a general population: The Kalixanda study

  Storskrubb T; Aro P; Ronkainen J; Sipponen P; Nyhlin H; Talley NJ; Engstrand L; Stolte M; Vieth M; Walker M; Agreus L
• Review: NESTLE NUTRITION WORKSHOP SERIES: PEDIATRIC PROGRAM. 2008;61:123-134

  Growth and nutrition: the first six months.

  Hanson LA; Zaman S; Werner B; Håversen L; Motas C; Moisei M; Mattsby-Baltzer I; Lange S; Banasaz M; Midtvedt T; Norin E; Silfverdal S-A
• Article: SCANDINAVIAN JOURNAL OF LABORATORY ANIMAL SCIENCE. 2008;35(3):199-201

  Probiotic Biotherapy for Eradication of a Potential Pathogen in a Commercial Rat Breeding Facility

  Collinder E; Bergstedt J; Persson A-K; Norin E; Midtvedt T
• Article: JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY. 2008;18(2):149-151

  Solubility of sodium diclofenac in binary water plus alcohol solvent mixtures at 25°C

  Saei AA; Jabbaribar F; Fakhree MAA; Acree WEJ; Jouyban A
• Conference publication: HELICOBACTER. 2008;13(5):393

  Extensive up-regulation of proinflammatory cytokines in the gastric mucosa of stomach cancer patients

  Lundin S; Adamsson J; Wang S; Kindlund B; Sjoling A; Sjovall H; Hansson L; Pettersson S; Svennerholm A
• Conference publication: HELICOBACTER. 2008;13(5):472-473

  New specific H-pylori IgG ELISA test

  Myllyniemi M; Hendolin P; Telaranta-Keerie A; Nikulin M; Paloheimo LI; Engstrand L; Sipponen P
• Conference publication: HELICOBACTER. 2008;13(5):423

  CagE not dupA plays an important role in IL-8 secretion in vitro

  Schmidt HA; Andres S; Engstrand L; Goh K; Fock K; Forman D; Mitchell H
• Article: JOURNAL OF BACTERIOLOGY. 2007;189(24):8914-8921

  Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori

  Skoglund A; Bjorkholm B; Nilsson C; Andersson AF; Jernberg C; Schirwitz K; Enroth C; Krabbe M; Engstrand L
• Article: JOURNAL OF PROTEOME RESEARCH. 2007;6(12):4572-4581

  Analysis of time-related metabolic fluctuations induced by ethionine in the rat.

  Skordi E; Yap IKS; Claus SP; Martin F-PJ; Cloarec O; Lindberg J; Schuppe-Koistinen I; Holmes E; Nicholson JK
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2007;42(10):1204-1208

  Gut microflora associated characteristics in first-degree relatives of children with celiac disease

  Tjellstroem B; Stenhammar L; Hoegberg L; Faelth-Magnusson K; Magnusson K-E; Midtvedt T; Sundqvist T; Houlston R; Popat S; Norin E
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2007;45(10):3295-3301

  Comparative analyses of phenotypic and genotypic methods for detection of enterotoxigenic Escherichia coli toxins and colonization factors

  Sjoling A; Wiklund G; Savarino SJ; Cohen DI; Svennerholm A-M
• Article: ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2007;389(3):875-885

  Proof of principle of a generalized fuzzy Hough transform approach to peak alignment of one-dimensional 1H NMR data.

  Csenki L; Alm E; Torgrip RJO; Aberg KM; Nord LI; Schuppe-Koistinen I; Lindberg J
• Article: METABOLOMICS. 2007;3(3):179-188

  Standard reporting requirements for biological samples in metabolomics experiments: mammalian/in vivo experiments

  Griffin JL; Nicholls AW; Daykin CA; Heald S; Keun HC; Schuppe-Koistinen I; Griffiths JR; Cheng LL; Rocca-Serra P; Rubtsov DV; Robertson D
• Article: JOURNAL OF CLINICAL PATHOLOGY. 2007;60(9):1029-1034

  Alteration in human defensin-5 expression following gastric bypass surgery

  Sundbom M; Elphick DA; Mahida YR; Cunliffe RN; Midtvedt T; Engstrand L; Rubio C; Axelsson LG
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2007;42(8):933-940

  Helicobacter pylori and CagA seropositivity and its association with gastric and oesophageal carcinoma

  Siman JH; Engstrand L; Berglund G; Forsgren A; Floren C-H
• Article: EUROPEAN JOURNAL OF CLINICAL NUTRITION. 2007;61(8):946-956

  Parental perceptions of feeding practices in five European countries: an exploratory study

  Synnott K; Bogue J; Edwards CA; Scott JA; Higgins S; Norin E; Frias D; Amarri S; Adam R
• Article: BMC MICROBIOLOGY. 2007;7:54

  Helicobacter pylori genome variability in a framework of familial transmission

  Kivi M; Rodin S; Kupershmidt I; Lundin A; Tindberg Y; Granstrom M; Engstrand L
• Article: NUTRITION AND CANCER-AN INTERNATIONAL JOURNAL. 2007;57(1):59-65

  Effect of fecal water on an in vitro model of colonic mucosal barrier function

  Gill CIR; Heavey P; McConville E; Bradbury I; Faessler C; Mueller S; Cresci A; Dore J; Norin E; Rowland I
• Other: APMIS. 2007;115(5):592-601

  Bile acid transformations by microbial strains belonging to genera found in intestinal contents. 1967.

  Midvedt T; Norman A
• Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2007;73(8):2727-2734

  Alignment-independent comparisons of human gastrointestinal tract microbial communities in a multidimensional 16S rRNA gene evolutionary space

  Rudi K; Zimonja M; Kvenshagen B; Rugtveit J; Midtvedt T; Eggesbo M
• Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2007;73(7):2284-2289

  Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles

  Dicksved J; Floistrup H; Bergstrom A; Rosenquist M; Pershagen G; Scheynius A; Roos S; Alm JS; Engstrand L; Braun-Fahrlander C; von Mutius E; Jansson JK
• Article: INTERNATIONAL JOURNAL OF CANCER. 2007;120(7):1472-1481

  Analysis of chromosome 10 aberrations in rat endometrial cancer -: Evidence for a tumor suppressor locus distal to Tp53

  Nordlander C; Karlsson S; Karlsson A; Sjoling A; Winnes M; Klinga-Levan K; Behboudi A
• Article: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 2007;59(3):478-486

  Transfer of plasmid and chromosomal glycopeptide resistance determinants occurs more readily in the digestive tract of mice than in vitro and exconjugants can persist stably in vivo in the absence of glycopeptide selection

  Dahl KH; Mater DDG; Flores MJ; Johnsen PJ; Midtvedt T; Corthier G; Sundsfjord A
• Article: METABOLOMICS. 2007;2(4):257-268

  Statistical multivariate metabolite profiling for aiding biomarker pattern detection and mechanistic interpretations in GC/MS based metabolomics

  Pohjanen E; Thysell E; Lindberg J; Schuppe-Koistinen I; Moritz T; Jonsson P; Antti H
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 2007;39(9):757-763

  Macrolide resistance in the normal microbiota after Helicobacter pylori treatment

  Jakobsson H; Wreiber K; Fall K; Fjelstad B; Nyren O; Engstrand L
• Article: OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY. 2007;11(2):209-224

  Reliable profile detection in comparative metabolomics.

  Thysell E; Pohjanen E; Lindberg J; Schuppe-Koistinen I; Moritz T; Jonsson P; Antti H
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2007;42(1):94-102

  Inflammatory response in patients with malignant obstructive jaundice.

  Ljungdahl M; Osterberg J; Ransjö U; Engstrand L; Haglund U
• Conference publication: HELICOBACTER. 2007;12(4):447

  Improved specificity of Helicobacter pylori IgA/IgG ELISA over other H-pylori tests

  Myllyniemi M; Linnala A; Paloheimo LI; Hendolin P; Engstrand L; Perez GP; Sipponen P
• Letter: HISTOPATHOLOGY. 2006;49(6):658-659

  Intestinal spirochaetosis.

  Willén R; Wanders A; Engstrand L
• Article: JOURNAL OF IMMUNOLOGY. 2006;177(11):7634-7644

  Oral tolerance induction with antigen conjugated to cholera toxin B subunit generates both Foxp3⁺CD25⁺ and Foxp3^-CD25^- CD4⁺ regulatory T cells

  Sun J-B; Raghavan S; Sjoling A; Lundin S; Holmgren J
• Article: LAKARTIDNINGEN. 2006;103(46):3603-3605

  [Feces culture successful therapy in Clostridium difficile diarrhea].

  Jorup-Rönström C; Håkanson A; Persson A-K; Midtvedt T; Norin E
• Article: PLOS PATHOGENS. 2006;2(10):e110

  SabA is the H. pylori hemagglutinin and is polymorphic in binding to sialylated glycans.

  Aspholm M; Olfat FO; Nordén J; Sondén B; Lundberg C; Sjöström R; Altraja S; Odenbreit S; Haas R; Wadström T; Engstrand L; Semino-Mora C; Liu H; Dubois A; Teneberg S; Arnqvist A; Borén T
• Article: MICROBES AND INFECTION. 2006;8(12-13):2797-2802

  In vivo expression of the heat stable (estA) and heat labile (eltB) toxin genes of enterotoxigenic Escherichia coli (ETEC)

  Sjoling A; Qadri F; Nicklasson M; Begum YA; Wiklund G; Svennerholm A-M
• Article: METABOLOMICS. 2006;2(3):135-143

  A strategy for modelling dynamic responses in metabolic samples characterized by GC/MS

  Jonsson P; Stenlund H; Moritz T; Trygg J; Sjostrom M; Verheij ER; Lindberg J; Schuppe-Koistinen I; Antti H
• Article: TIDSSKRIFT FOR DEN NORSKE LAEGEFORENING. 2006;126(18):2383-2384

  [Daptomycin--a new antibiotic for the treatment of skin and soft tissue infections].

  Mathiesen L; Midtvedt T; Solberg CO
• Article: FREE RADICAL BIOLOGY AND MEDICINE. 2006;41(6):985-991

  Generation of NO by probiotic bacteria in the gastrointestinal tract

  Sobko T; Huang L; Midtvedt T; Norin E; Gustafsson LE; Norman M; Jansson EA; Lundberg JO
• Article: VIRUS RESEARCH. 2006;120(1-2):36-48

  Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications.

  Czeglédi A; Ujvári D; Somogyi E; Wehmann E; Werner O; Lomniczi B
• Article: AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY. 2006;291(3):G396-G403

  Impaired mucus-bicarbonate barrier in Helicobacter pylori-infected mice.

  Henriksnäs J; Phillipson M; Storm M; Engstrand L; Soleimani M; Holm L
• Article: HELICOBACTER. 2006;11(4):224-230

  Antimicrobial susceptibility of Helicobacter pylori strains in a random adult Swedish population

  Storskrubb T; Aro P; Ronkainen J; Wreiber K; Nyhlin H; Bolling-Sternevald E; Talley NJ; Engstrand L; Agreus L
• Journal article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006;103(26):9999-10004

  The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain:: Evolution during disease progression

  Oh JD; Kling-Backhed H; Giannakis M; Xu J; Fulton RS; Fulton LA; Cordum HS; Wang C; Elliott G; Edwards J; Mardis ER; Engstrand LG; Gordon JI
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2006;44(6):1925-1929

  Rapid detection of rifampin resistance in Mycobacterium tuberculosis by Pyrosequencing technology

  Jureen P; Engstrand L; Eriksson S; Alderborn A; Krabbe M; Hoffner SE
• Article: JOURNAL OF PROTEOME RESEARCH. 2006;5(6):1407-1414

  Predictive metabolite profiling applying hierarchical multivariate curve resolution to GC-MS data--a potential tool for multi-parametric diagnosis.

  Jonsson P; Johansson ES; Wuolikainen A; Lindberg J; Schuppe-Koistinen I; Kusano M; Sjöström M; Trygg J; Moritz T; Antti H
• Article: AMERICAN JOURNAL OF EPIDEMIOLOGY. 2006;163(11):1025-1034

  Peptic ulcer disease in a general adult population -: The Kalixanda study:: A random population-based study

  Aro P; Storskrubb T; Ronkainen J; Bolling-Sternevald E; Engstrand L; Vieth M; Stolte M; Talley NJ; Agreus L
• Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2006;281(9):5593-5603

  Interactions of nitroaromatic compounds with the mammalian selenoprotein thioredoxin reductase and the relation to induction of apoptosis in human cancer cells

  Cenas N; Prast S; Nivinskas H; Sarlauskas J; Arnér ESJ
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006;103(8):2863-2868

  An enzymatic ruler modulates Lewis antigen glycosylation of Helicobacter pylori LPS during persistent infection

  Nilsson C; Skoglund A; Moran AP; Annuk H; Engstrand L; Normark S
• Article: ANALYTICAL CHEMISTRY. 2006;78(4):975-983

  Second-order peak detection for multicomponent high-resolution LC/MS data.

  Stolt R; Torgrip RJO; Lindberg J; Csenki L; Kolmert J; Schuppe-Koistinen I; Jacobsson SP
• Article: VIRUS GENES. 2006;32(1):49-57

  Complete nucleotide sequence of IT-227/82, an avian paramyxovirus type-1 strain of pigeons (Columba livia).

  Ujvári D
• Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2006;72(2):1027-1033

  Differences in fecal microbiota in different European study populations in relation to age, gender, and country:: A cross-sectional study

  Mueller S; Saunier K; Hanisch C; Norin E; Alm L; Midtvedt T; Cresci A; Silvi S; Orpianesi C; Verdenelli MC; Clavel T; Koebnick C; Zunft HJF; Doré J; Blaut M
• Article: JOURNAL OF VIROLOGICAL METHODS. 2006;131(2):115-121

  Identification and subgrouping of pigeon type Newcastle disease virus strains by restriction enzyme cleavage site analysis.

  Ujvári D; Wehmann E; Herczeg J; Lomniczi B
• Journal article: CURRENT OPINION IN MICROBIOLOGY. 2006;9(1):21-27

  Interactions between gastric epithelial stem cells and Helicobacter pylori in the setting of chronic atrophic gastritis.

  Oh JD; Kling-Bäckhed H; Giannakis M; Engstrand LG; Gordon JI
• Article: METABOLOMICS. 2006;2(1):1-19

  New modes of data partitioning based on PARS peak alignment for improved multivariate biomarker/biopattern detection in ¹H-NMR spectroscopic metabolic profiling of urine

  Torgrip RJO; Lindberg J; Linder M; Karlberg B; Jacobsson SP; Kolmert J; Gustafsson I; Schuppe-Koistinen I
• Article: GEOMICROBIOLOGY JOURNAL. 2006;23(1):45-58

  Indicators of petroleum hydrocarbon biodegradation in anaerobic granitic groundwater

  Eriksson S; Hallbeck L; Ankner T; Abrahamsson K; Sjöling Å
• Conference publication: GUT. 2006;55:A97

  Alterations in human defensin-5 (HD-5) expression following gastric bypass surgery

  Elphick DA; Sundbom M; Mahida YR; Cunliffe RN; Midtvedt T; Engstrand L; Gustavsson S; Axelsson LG
• Article: JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2005;828(1-2):14-20

  Metabolic fingerprinting of rat urine by LC/MS Part 2. Data pretreatment methods for handling of complex data

  Idborg H; Zamani L; Edlund PO; Schuppe-Koistinen I; Jacobsson SP
• Article: JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2005;828(1-2):9-13

  Metabolic fingerprinting of rat urine by LC/MS Part 1. Analysis by hydrophilic interaction liquid chromatography-electrospray ionization mass spectrometry

  Idborg H; Zamani L; Edlund PO; Schuppe-Koistinen I; Jacobsson SP
• Article: LAKARTIDNINGEN. 2005;102(49):3779-3786

  [From a controversial minor finding to the Nobel Prize. The discovery of Helicobacter pylori--an unlikely tale of success].

  Engstrand L; Enroth H
• Published conference paper: AMERICAN JOURNAL OF GASTROENTEROLOGY. 2005;100(12):2784-2788

  Gut microflora associated characteristics in children with celiac disease

  Tjellström B; Stenhammar L; Högberg L; Fälth-Magnusson K; Magnusson KE; Midtvedt T; Sundqvist T; Norin E
• Article: NITRIC OXIDE-BIOLOGY AND CHEMISTRY. 2005;13(4):272-278

  Gastrointestinal bacteria generate nitric oxide from nitrate and nitrite

  Sobko T; Reinders CI; Jansson E; Norin E; Midtvedt T; Lundberg JO
• Article: MOLECULAR & CELLULAR PROTEOMICS. 2005;4(12):1920-1932

  A human protein atlas for normal and cancer tissues based on antibody proteomics

  Uhlén M; Björling E; Agaton C; Szigyarto CA; Amini B; Andersen E; Andersson AC; Angelidou P; Asplund A; Asplund C; Berglund L; Bergström K; Brumer H; Cerjan D; Ekström M; Elobeid A; Eriksson C; Fagerberg L; Falk R; Fall J; Forsberg M; Björklund MG; Gumbel K; Halimi A; Hallin I; Hamsten C; Hansson M; Hedhammar M; Hercules G; Kampf C; Larsson K; Linskog M; Lodewyckx W; Lund J; Lundeberg J; Magnusson K; Malm E; Nilsson P; Ödling J; Oksvold P; Olsson I; Öster E; Ottosson J; Paavilainen L; Persson A; Rimini R; Rockberg J; Runeson M; Sivertsson Å; Sköllermo A; Steen J; Stenvall M; Sterky F; Strömberg S; Sundberg M; Tegel H; Tourle S; Wahlund E; Waldén A; Wan JH; Wernérus H; Westberg J; Wester K; Wrethagen U; Xu LL; Hober S; Pontén F
• Article: HISTOCHEMISTRY AND CELL BIOLOGY. 2005;124(5):423-433

  Indigenous microbes and their soluble factors differentially modulate intestinal glycosylation steps in vivo - Use of a "lectin assay'' to survey in vivo glycosylation changes

  Freitas M; Axelsson LG; Cayuela C; Midtvedt T; Trugnan G
• Article: EMERGING INFECTIOUS DISEASES. 2005;11(10):1527-1531

  Pyrosequencing Bacillus anthracis.

  Wahab T; Hjalmarsson S; Wollin R; Engstrand L
• Article: LABORATORY ANIMALS. 2005;39(4):421-427

  Germfree status of mice obtained by embryo transfer in an isolator environment

  Inzunza J; Midtvedt T; Fartoo M; Norin E; Österlund E; Persson AK; Ährlund-Richter L
• Article: EMERGING INFECTIOUS DISEASES. 2005;11(9):1389-1393

  Persistence of resistant Staphylococcus epidermidis after single course of clarithromycin.

  Sjölund M; Tano E; Blaser MJ; Andersson DI; Engstrand L
• Article: INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY. 2005;295(4):201-212

  Salmonella enterica SpvB-mediated ADP-ribosylation as an activator for host cell actin degradation

  Tezcan-Merdol D; Engstrand L; Rhen M
• Article: INFECTION AND IMMUNITY. 2005;73(8):4818-4822

  Slow genetic divergence of Helicobacter pylori strains during long-term colonization

  Lundin A; Björkholm B; Kupershmidt I; Unemo M; Nilsson P; Andersson DI; Engstrand L
• Editorial comment: NATURE BIOTECHNOLOGY. 2005;23(7):833-838

  Summary recommendations for standardization and reporting of metabolic analyses.

  Lindon JC; Nicholson JK; Holmes E; Keun HC; Craig A; Pearce JTM; Bruce SJ; Hardy N; Sansone S-A; Antti H; Jonsson P; Daykin C; Navarange M; Beger RD; Verheij ER; Amberg A; Baunsgaard D; Cantor GH; Lehman-McKeeman L; Earll M; Wold S; Johansson E; Haselden JN; Kramer K; Thomas C; Lindberg J; Schuppe-Koistinen I; Wilson ID; Reily MD; Robertson DG; Senn H; Krotzky A; Kochhar S; Powell J; van der Ouderaa F; Plumb R; Schaefer H; Spraul M; Standard Metabolic Reporting Structures working gr
• Article: TIDSSKRIFT FOR DEN NORSKE LAEGEFORENING. 2005;125(11):1519-1521

  [Microbiology on Kjolen's both sides].

  Midtvedt T
• Article: ACTA PHYSIOLOGICA. 2005;184(2):151-159

  An in vivo model for gastric physiological and pathophysiological studies in the mouse.

  Henriksnäs J; Phillipson M; Petersson J; Engstrand L; Holm L
• Article: JOURNAL OF MICROBIOLOGICAL METHODS. 2005;61(3):361-367

  Real-time PCR for pharmacodynamic studies of Chlamydia trachomatis.

  Storm M; Gustafsson I; Herrmann B; Engstrand L
• Published conference paper: FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY. 2005;44(2):151-156

  Correlation of the Helicobacter pylori adherence factor BabA with duodenal ulcer disease in four European countries.

  Olfat FO; Zheng Q; Oleastro M; Voland P; Borén T; Karttunen R; Engstrand L; Rad R; Prinz C; Gerhard M
• Article: NUTRITION RESEARCH. 2005;25(5):429-442

  Fermented, ropy, oat-based products reduce cholesterol levels and stimulate the bifidobacteria flora in humans

  Mårtensson O; Biörklund M; Lambo AM; Dueñas-Chasco M; Irastorza A; Holst O; Norin E; Welling G; Öste R; Önning G
• Article: TRANSBOUNDARY AND EMERGING DISEASES. 2005;52(3):109-113

  Biochemical intestinal parameters in germ-free minipigs and rats and in ex-germ-free minipigs and rats monoassociated with Escherichia coli

  Cardona ME; Kozakova H; Collinder E; Persson AK; Midtvedt T; Norin E
• Article: INFECTION AND IMMUNITY. 2005;73(3):1482-1490

  Natural killer cells and Helicobacter pylori infection:: Bacterial antigens and interleukin-12 act synergistically to induce gamma interferon production

  Yun CH; Lundgren A; Azem J; Sjöling Å; Holmgren J; Svennerholm AM; Lundin BS
• Article: CANCER GENETICS. 2005;157(2):97-103

  Assessment of allele dosage at polymorphic microsatellite loci displaying allelic imbalance in tumors by means of quantitative competitive-polymerase chain reaction

  Sjöling Å; Walentinsson A; Nordlander C; Karlsson Å; Behboudi A; Samuelson E; Levan G; Röhme D
• Article: ALLERGY. 2005;60(3):396-400

  Birth-related increase in intracolonic hydrogen gas and nitric oxide as indicator of host-microbial interactions

  Sobko T; Norman M; Norin E; Gustafsson LE; Lundberg JO
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2005;40(3):312-318

  Histology and culture results among subjects with antibodies to CagA but no evidence of Helicobacter pylori infection with IgG ELISA

  Ye WM; Held M; Enroth H; Kraaz W; Engstrand L; Nyrén O
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2005;40(3):302-311

  A negative Helicobacter pylori serology test is more reliable for exclusion of premalignant gastric conditions than a negative test for current H-pylori infection:: A report on histology and H-pylori detection in the general adult population

  Storskrubb T; Aro P; Ronkainen J; Vieth M; Stolte M; Wreiber K; Engstrand L; Nyhlin H; Bolling-Sternevald E; Talley NJ; Agréus L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2005;40(3):275-285

  High prevalence of gastroesophageal reflux symptoms and esophagitis with or without symptoms in the general adult Swedish population:: A Kalixanda study report

  Ronkainen J; Aro P; Storskrubb T; Johansson SE; Lind T; Bolling-Sternevald E; Graffner H; Vieth M; Stolte M; Engstrand L; Talley NJ; Agréus L
• Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2005;327(3):774-779

  Overexpression of glutaredoxin 2 attenuates apoptosis by preventing cytochrome c release

  Enoksson M; Fernandes AP; Prast S; Lillig CH; Hohngren A; Orrenius S
• Article: CLINICAL AND VACCINE IMMUNOLOGY. 2005;12(2):304-309

  Evaluation of western blot CagA seropositivity in Helicobacter pylori-seropositive and -seronegative subjects

  Simán FH; Engstrand L; Berglund G; Florén CH; Forsgren A
• Article: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2005;55(Pt 1):77-82

  Lactobacillus gastricus sp. nov., Lactobacillus antri sp. nov., Lactobacillus kalixensis sp. nov. and Lactobacillus ultunensis sp. nov., isolated from human stomach mucosa.

  Roos S; Engstrand L; Jonsson H
• Article: CLINICAL MICROBIOLOGY AND INFECTION. 2005;11(1):66-68

  Assessment of the cag pathogenicity island status of Helicobacter pylori infections with serology and PCR

  Kivi M; Tindberg Y; Bengtsson C; Engstrand L; Granström M
• Article: INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS. 2005;25(1):68-74

  Clarithromycin treatment selects for persistent macrolide-resistant bacteria in throat commensal flora.

  Jönsson M; Qvarnström Y; Engstrand L; Swedberg G
• Article: INFECTION AND IMMUNITY. 2005;73(1):523-531

  Mucosal FOXP3-expressing CD4⁺ CD25^high regulatory T cells in Helicobacter pylori-infected patients

  Lundgren A; Strömberg E; Sjöling Å; Lindholm C; Enarsson K; Edebo A; Johnsson E; Suri-Payer E; Larsson P; Rudin A; Svennerholm AM; Lundin BS
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 2005;37(4):262-268

  Antimicrobial resistance in urinary bacterial isolates from pregnant women in rural Tanzania:: Implications for public health

  Blomberg B; Olsen BE; Hinderaker SG; Langeland N; Gasheka P; Jureen R; Kvåle G; Midtvedt T
• Conference publication: HELICOBACTER. 2005;10(5):541

  Antimicrobial susceptibility of Helicobacter pylori in a Swedish random adult population

  Engstrand L; Storskrubb T; Ronkainen J; Aro P; Wreiber K; Cars O; Talley N; Agreus L
• Article: EUROPEAN JOURNAL OF IMMUNOLOGY. 2004;34(12):3389-3400

  Microbial colonization induces oligoclonal expansions of intraepithelial CD8 T cells in the gut

  Helgeland L; Dissen E; Dai KZ; Midtvedt T; Brandtzaeg P; Vaage JT
• Article: AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY. 2004;31(6):657-662

  Immune response to Mycoplasma pulmonis in nasal mucosa is modulated by the normal microbiota

  Henriksson G; Helgeland L; Midtvedt T; Stierna P; Brandtzaeg P
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2004;39(12):1280-1288

  Valid symptom reporting at upper endoscopy in a random sample of the Swedish adult general population:: the Kalixanda study

  Aro P; Ronkainen J; Storskrubb T; Bolling-Sternevald E; Carlsson R; Johansson SE; Vieth M; Stolte M; Engstrand L; Talley NJ; Agréus L
• Article: AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY. 2004;287(5):G993-G997

  Gastrointestinal nitric oxide generation in germ-free and conventional rats

  Sobko T; Reinders C; Norin E; Midtvedt T; Gustafsson LE; Lundberg JO
• Review: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2004;39(10):913-918

  Management issues in dyspepsia:: Current consensus and controversies

  Talley NJ; Vakil N; Delaney B; Marshall B; Bytzer P; Engstrand L; de Boer W; Jones R; Malfertheiner P; Agréus L
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2004;42(10):4856-4858

  Antimicrobial susceptibility of Helicobacter pylori strains isolated in Bangladesh.

  Nahar S; Mukhopadhyay AK; Khan R; Ahmad MM; Datta S; Chattopadhyay S; Dhar SC; Sarker SA; Engstrand L; Berg DE; Nair GB; Rahman M
• Published conference paper: FOOD AND CHEMICAL TOXICOLOGY. 2004;42(7):1127-1156

  The relevance of gene transfer to the safety of food and feed derived from genetically modified (GM) plants

  van den Eede G; Aarts HJ; Buhk HJ; Corthier G; Flint HJ; Hammes W; Jacobsen B; Midtvedt T; van der Vossen J; von Wright A; Wackernagel W; Wilcks A
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2004;39(7):657-664

  Microbial translocation and inflammatory response in patients with acute peritonitis.

  Osterberg J; Ljungdahl M; Lundholm M; Engstrand L; Haglund U
• Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2004;70(6):3706-3714

  Uptake and replication of Salmonella enterica in Acanthamoeba rhysodes

  Tezcan-Merdol D; Ljungström M; Winiecka-Krusnell J; Linder E; Engstrand L; Rhen M
• Article: HELICOBACTER. 2004;9(3):271-277

  Is the association between Helicobacter pylori and gastric cancer confined to CagA-positive strains?

  Held M; Engstrand L; Hansson LE; Bergström R; Wadström T; Nyrén O
• Article: HELICOBACTER. 2004;9(2):138-145

  Rapid combined characterization of microorganism and host genotypes using a single technology.

  Hjalmarsson S; Alderborn A; Fock C; Muldin I; Kling H; Uhlén M; Engstrand L
• Article: BIOCHEMICAL PHARMACOLOGY. 2004;67(7):1249-1258

  Differentiation of human hepatoma cells during confluence as revealed by gene expression profiling

  Butura A; Johansson I; Nilsson K; Wärngård L; Ingelman-Sundberg M; Schuppe-Koistinen I
• Article: GENE. 2004;328:85-93

  Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates

  Blomstergren A; Lundin A; Nilsson C; Engstrand L; Lundeberg J
• Article: JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2004;96(5):388-396

  Helicobacter pylori infection and gastric atrophy:: Risk of adenocarcinoma and squamous-cell carcinoma of the esophagus and adenocarcinoma of the gastric cardia

  Ye WM; Held M; Lagergren J; Engstrand L; Blot WJ; McLaughlin JK; Nyrén O
• Article: MICROBES AND INFECTION. 2004;6(2):213-220

  Gnotobiotic transgenic mice reveal that transmission of Helicobacter pylori is facilitated by loss of acid-producing parietal cells in donors and recipients

  Björkholm B; Guruge J; Karlsson M; O'Donnell D; Engstrand L; Falk P; Gordon J
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2003;41(12):5604-5608

  Concordance of Helicobacter pylori strains within families

  Kivi M; Tindberg Y; Sörberg M; Casswall TH; Befrits R; Hellström PM; Bengtsson C; Engstrand L; Granström M
• Article: INFECTION AND IMMUNITY. 2003;71(11):6573-6581

  Correlation between cag pathogenicity island composition and Helicobacter pylori-associated gastroduodenal disease

  Nilsson C; Sillén A; Eriksson L; Strand ML; Enroth H; Normark S; Falk P; Engstrand L
• Article: VETERINARY RESEARCH COMMUNICATIONS. 2003;27(7):513-526

  Influence of zinc bacitracin and Bacillus licheniformis on microbial intestinal functions in weaned piglets

  Collinder E; Cardona ME; Berge GN; Norin E; Stern S; Midtvedt T
• Article: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 2003;52(4):645-650

  Bacteria with increased mutation frequency and antibiotic resistance are enriched in the commensal flora of patients with high antibiotic usage.

  Gustafsson I; Sjölund M; Torell E; Johannesson M; Engstrand L; Cars O; Andersson DI
• Article: VIRUS RESEARCH. 2003;96(1-2):63-73

  Phylogenetic analysis reveals extensive evolution of avian paramyxovirus type 1 strains of pigeons (Columba livia) and suggests multiple species transmission.

  Ujvári D; Wehmann E; Kaleta EF; Werner O; Savić V; Nagy E; Czifra G; Lomniczi B
• Article: ANNALS OF INTERNAL MEDICINE. 2003;139(6):483-487

  Long-term persistence of resistant Enterococcus species after antibiotics to eradicate Helicobacter pylori.

  Sjölund M; Wreiber K; Andersson DI; Blaser MJ; Engstrand L
• Article: ANALYTICAL CHEMISTRY. 2003;75(18):4784-4792

  Screening of biomarkers in rat urine using LC/electrospray ionization-MS and two-way data analysis

  Idborg-Björkman H; Edlund PO; Kvalheim OM; Schuppe-Koistinen I; Jacobsson SP
• Article: NUCLEIC ACIDS RESEARCH. 2003;31(16):e95-95

  Restriction site tagged (RST) microarrays:: a novel technique to study the species composition of complex microbial systems -: art. no. e95

  Zabarovsky ER; Petrenko L; Protopopov A; Vorontsova O; Kutsenko AS; Zhao YY; Kilosanidze G; Zabarovska V; Rakhmanaliev E; Pettersson B; Kashuba VI; Ljungqvist O; Norin E; Midtvedt T; Möllby R; Winberg G; Ernberg I
• Article: JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION. 2003;37(2):168-177

  A human flora-associated rat model of the breast-fed infant gut

  Edwards CA; Rumney C; Davies T; Parrett AM; Dore T; Martin T; Schmitt J; Stahl B; Norin E; Midtvedt T; Rowland IR; Heavey P; Köhler H; Stocks B; Schroten H
• Article: VETERINARY MICROBIOLOGY. 2003;94(4):269-281

  Genetic analysis of Newcastle disease virus strains isolated in Bosnia-Herzegovina, Croatia, Slovenia and Yugoslavia, reveals the presence of only a single genotype, V, between 1979 and 2002.

  Wehmann E; Ujvári D; Mazija H; Velhner M; Ciglar-Grozdanić I; Savić V; Jermolenko G; Cac Z; Prukner-Radovcić E; Lomniczi B
• Article: BRAIN RESEARCH. 2003;115(2):130-146

  Gene and protein expression profiling of human cerebral endothelial cells activated with tumor necrosis factor-α

  Franzén B; Duvefelt K; Jonsson C; Engelhardt B; Ottervald J; Wickman M; Yang Y; Schuppe-Koistinen I
• Corrigendum: JOURNAL OF CLINICAL MICROBIOLOGY. 2003;41(7):3465

  DNA-Level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh (vol 41, pg 2008, 2003)

  Rahman M; Mukhopadhyay AK; Nahar S; Datta S; Ahmad MM; Sarker S; Masud IM; Engstrand L; Albert MJ; Nair GB; Berg DE
• Article: ANALYTICA CHIMICA ACTA. 2003;487(2):189-199

  Peak alignment of NMR signals by means of a genetic algorithm

  Forshed J; Schuppe-Koistinen I; Jacobsson SP
• Article: EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES. 2003;22(10):622-624

  Infection with cagA-positive and cagA-negative types of Helicobacter pylori among children and adolescents with gastrointestinal symptoms in Latvia

  Daugule I; Rumba I; Engstrand L; Ejderhamn J
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2003;41(5):2008-2014

  DNA-level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh.

  Rahman M; Mukhopadhyay AK; Nahar S; Datta S; Ahmad MM; Sarker S; Masud IM; Engstrand L; Albert MJ; Nair GB; Berg DE
• Article: TOXICOLOGY AND APPLIED PHARMACOLOGY. 2003;188(3):176-184

  Etiology of cecal and hepatic lesions in mice after administration of gas-carrier contrast agents used in ultrasound imaging

  Rasmussen H; Dirven HAAM; Grant D; Johnsen H; Midtvedt T
• Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2003;278(14):12574-12578

  The NudA protein in the gastric pathogen Helicobacter pylori is an ubiquitous and constitutively expressed dinucleoside polyphosphate hydrolase

  Lundin A; Nilsson C; Gerhard M; Andersson DI; Krabbe M; Engstrand L
• Article: EUROPEAN JOURNAL OF CANCER PREVENTION. 2003;12(2):101-107

  Probiotic mixture decreases DNA adduct formation in colonic epithelium induced by the food mutagen 2-amino-9H-pyrido[2,3-b]indole in a human-flora associated mouse model

  Horie H; Zeisig M; Hirayama K; Midtvedt T; Möller L; Rafter J
• Article: ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY. 2003;59(Pt 4):719-720

  Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of HP1352, a putative DNA methyltransferase in Helicobacter pylori.

  Schirwitz K; Lundin A; Skoglund A; Krabbe M; Engstrand L; Enroth C
• Article: INFECTION AND IMMUNITY. 2003;71(4):1784-1793

  Expression of Clostridium difficile toxins A and B and their sigma factor TcdD is controlled by temperature

  Karlsson S; Dupuy B; Mukherjee K; Norin E; Burman LG; Åkerlund T
• Article: LANGENBECKS ARCHIVES OF SURGERY. 2003;388(2):112-115

  Orally delivered antibiotics which lower bacterial numbers decrease experimental intra-abdominal adhesions

  Bothin C; Midtvedt T; Perbeck L
• Article: LARYNGOSCOPE. 2003;113(2):270-275

  Bacteria detected by culture and 16S rRNA sequencing in maxillary sinus samples from intensive care unit patients.

  Westergren V; Bassiri M; Engstrand L
• Review: JOURNAL OF INTERNAL MEDICINE. 2003;253(2):102-119

  Helicobacter pylori:: resurrection of the cancer link

  Björkholm B; Falk P; Engstrand L; Nyrén O
• Article: NUCLEIC ACIDS RESEARCH. 2003;31(2):E5

  NotI passporting to identify species composition of complex microbial systems -: art. no. e5

  Zabarovska V; Kutsenko AS; Petrenko L; Kilosanidze G; Ljungqvist O; Norin E; Midtvedt T; Winberg G; Möllby R; Kashuba VI; Ernberg I; Zabarovsky ER
• Article: JOURNAL OF IMMUNOLOGY. 2003;170(2):816-822

  Microbial colonization drives lymphocyte accumulation and differentiation in the follicle-associated epithelium of Peyer's patches

  Yamanaka T; Helgeland L; Farstad IN; Fukushima H; Midtvedt T; Brandtzaeg P
• Article: GENES CHROMOSOMES & CANCER. 2003;36(1):70-79

  Recurrent allelic imbalance at the rat Pten locus in DMBA-induced fibrosarcomas

  Sjöling Å; Samuelson E; Adamovic T; Behboudi A; Röhme D; Levan G
• Published conference paper: SCANDINAVIAN JOURNAL OF CLINICAL & LABORATORY INVESTIGATION. 2003;63:47-52

  The usefulness of nucleic aid tests for the determination of antimicrobial resistance

  Engstrand L
• Conference publication: FASEB JOURNAL. 2003;17(5):A989

  Recombinant fusion proteins carrying Sialyl-Lewis X as inhibitors of Helicobacter pylori adhesion

  Löfling J; Wreiber K; Engstrand L; Holgersson J
• Article: PEDIATRIC ALLERGY AND IMMUNOLOGY. 2002;13(6):402-411

  An anthroposophic lifestyle and intestinal microflora in infancy

  Alm JS; Swartz J; Björkstén B; Engstrand L; Engström J; Kühn I; Lilja G; Möllby R; Norin E; Pershagen G; Reinders C; Wreiber K; Scheynius A
• Article: NUTRITION RESEARCH. 2002;22(12):1461-1473

  Effects of fermented, ropy, non-dairy, oat-based products on serum lipids and the faecal excretion of cholesterol and short chain fatty acids in germfree and conventional rats

  Mårtensson O; Dueñas-Chasco M; Irastorza A; Holst O; Rudling M; Norin E; Midtvedt T; Öste R
• Article: ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. 2002;406(2):229-240

  Identification of S-glutathionylated cellular proteins during oxidative stress and constitutive metabolism by affinity purification and proteomic analysis

  Lind C; Gerdes R; Hamnell Y; Schuppe-Koistinen I; von Löwenhielm HB; Holmgren A; Cotgreave IA
• Article: TOXICOLOGY. 2002;179(3):197-219

  Molecular profiling of hepatotoxicity induced by a aminoguanidine carboxylate in the rat: gene expression profiling.

  Schuppe-Koistinen I; Frisk A-L; Janzon L
• Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2002;277(37):34191-34197

  Colonization of germ-free transgenic mice with genotyped Helicobacter pylori strains from a case-control study of gastric cancer reveals a correlation between host responses and HsdS components of type I restriction-modification systems

  Björkholm BM; Guruge JL; Oh JD; Syder AJ; Salama N; Guillemin K; Falkow S; Nilsson C; Falk PG; Engstrand L; Gordon JI
• Article: JOURNAL OF MICROBIOLOGICAL METHODS. 2002;50(3):283-289

  Limitations in the use of 3-hydroxy fatty acid analysis to determine endotoxin in mammalian samples

  Szponar B; Norin E; Midtvedt T; Larsson L
• Article: IMMUNOLOGICAL INVESTIGATIONS. 2002;31(3-4):191-204

  Expression of tumor-associated Thomsen-Friedenreich antigen (T Ag) in Helicobacter pylori and modulation of T Ag specific immune response in infected individuals.

  Klaamas K; Kurtenkov O; Rittenhouse-Olson K; Brjalin V; Miljukhina L; Shljapnikova L; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2002;37(8):884-890

  Does the method of Helicobacter pylori detection influence the association with gastric cancer risk?

  Enroth H; Kraaz W; Rohan T; Nyrén O; Engstrand L
• Article: HISTOCHEMISTRY AND CELL BIOLOGY. 2002;118(2):149-161

  Microbial-host interactions specifically control the glycosylation pattern in intestinal mouse mucosa

  Freitas M; Axelsson LG; Cayuela C; Midtvedt T; Trugnan G
• Published conference paper: JOURNAL OF INFECTIOUS DISEASES. 2002;186(3):423-427

  Cultured human gastric explants:: A model for studies of bacteria-host interaction during conditions of experimental Helicobacter pylori infection

  Olfat FO; Näslund E; Freedman J; Borén T; Engstrand L
• Article: INTERNATIONAL JOURNAL OF COLORECTAL DISEASE. 2002;17(4):223-232

  Abrogated lymphocyte infiltration and lowered CD14 in dextran sulfate induced colitis in mice treated with p65 antisense oligonucleotides

  Spiik AK; Ridderstad A; Axelsson LG; Midtvedt T; Björk L; Pettersson S
• Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2002;68(6):3031-3034

  Increased enterocyte production in gnotobiotic rats mono-associated with Lactobacillus rhamnosus GG

  Banasaz M; Norin E; Holma R; Midtvedt T
• Review: EXPERT REVIEW OF MOLECULAR DIAGNOSTICS. 2002;2(3):267-272

  Determining antibiotic resistance in Helicobacter pylori.

  Hjalmarsson S; Sjölund M; Engstrand L
• Article: TRANSBOUNDARY AND EMERGING DISEASES. 2002;49(4):203-209

  Biochemical intestinal parameters in pigs reared outdoors and indoors, and in germ-free pigs

  Collinder E; Cardona ME; Kozakova H; Norin E; Stern S; Midtvedt T
• Published conference paper: TOXICOLOGY LETTERS. 2002;127(1-3):239-243

  Identification of end points relevant to detection of potentially adverse drug reactions.

  Hellmold H; Nilsson CB; Schuppe-Koistinen I; Kenne K; Wärngård L
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2002;40(1):227-232

  Phenotypic variation of Helicobacter pylori isolates from geographically distinct regions detected by lectin typing.

  Hynes SO; Broutet N; Wadström T; Mikelsaar M; O'Toole PW; Telford J; Engstrand L; Kamiya S; Mentis AF; Moran AP; Eurohepygast Study Group
• Article: JOURNAL OF APPLIED PHYSIOLOGY. 2002;92(1):219-224

  PCO₂ in the large intestine of mice, rats, guinea pigs, and dogs and effects of the dietary substrate

  Rasmussen H; Mirtaheri P; Dirven H; Johnsen H; Kvarstein G; Tonnessen TI; Midtvedt T
• Review: RECOMBINANT PROTEIN EXPRESSION: PROKARYOTIC HOSTS AND CELL-FREE SYSTEMS. 2002;348:175-182

  S-glutathionylation of glyceraldehyde-3-phosphate dehydrogenase: Role of thiol oxidation and catalysis by glutaredoxin

  Cotgreave IA; Gerdes R; Schuppe-Koistinen I; Lind C
• Article: CYTOGENETIC AND GENOME RESEARCH. 2002;96(1-4):52-59

  Evolutionary aspects of the genomic organization of rat chromosome 10

  Behboudi A; Sjöstrand E; Gómez-Fabre P; Sjöling A; Taib Z; Klinga-Levan K; Ståhl F; Levan G
• Article: EXPERIMENTAL ONCOLOGY. 2002;24(1):38-44

  Enhanced humoral immune response to tumor-associated T glycotope (Galβ1,3-gaINAc) in Helicobacter pylori-infected patients with gastric cancer and non-tumor gastric diseases

  Klaamas K; Kurtenkov O; Brjalin V; Miljukhina L; Shljapnikova L; Engstrand L
• Article: MICROBIAL DRUG RESISTANCE. 2002;8(3):161-170

  Stability, persistence, and evolution of plasmid-encoded VanA glycopeptide resistance in enterococci in the absence of antibiotic selection in vitro and in gnotobiotic mice

  Johnsen PJ; Simonsen GS; Olsvik O; Midtvedt T; Sundsfjord A
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 2002;34(4):253-256

  Free-living amoebae promote growth and survival of helicobacter pylori

  Winiecka-Krusnell J; Wreiber K; Von Euler A; Engstrand L; Linder E
• Review: ANNUAL REVIEW OF NUTRITION. 2002;22:283-307

  How host-microbial interactions shape the nutrient environment of the mammalian intestine

  Hooper LV; Midtvedt T; Gordon JI
• Meeting abstract: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. 2002;109(1):S50-S51

  An anthroposophic life style and intestinal microflora in infancy

  Alm J; Swartz J; Bjorksten B; Ensgtrand L; Lilja G; Möllby R; Pershagen G; Scheynius A
• Conference publication: GLYCOBIOLOGY. 2002;12(10):663

  Recombinant fusion proteins carrying sialyl-Lewis x as inhibitors of Helicobacter pylori adhesion

  Löfling J; Wreiber K; Falk P; Engstrand L; Holgersson J
• Conference publication: GUT. 2002;51:A65

  Helicobacter pylori CagA seropositivity reduces the risk of developing adenocarcinoma and squamous cell carcinoma in the oesophagus

  Simán H; Held M; Engstrand L; Forsgren A; Berglund G; Florén C
• Article: CLINICAL AND EXPERIMENTAL IMMUNOLOGY. 2001;116(2):283-290

  Immunomodulatory effects of Lactobacillus plantarum colonizing the intestine of gnotobiotic rats

  Herías MV; Hessle C; Telemo E; Midtvedt T; Hanson L; Wold AE
• Article: LAKARTIDNINGEN. 2001;98(50):5742-5745

  [Anthrax--the Swedish perspective].

  Tegnell A; Hellers M; Wollin R; Eriksson U; Forsman M; Engstrand L; Elgh F
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001;98(25):14607-14612

  Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori

  Björkholm B; Sjölund M; Falk PG; Berg OG; Engstrand L; Andersson DI
• Article: NITRIC OXIDE-BIOLOGY AND CHEMISTRY. 2001;5(6):580-586

  Effects of pH, nitrite, and ascorbic acid on nonenzymatic nitric oxide generation and bacterial growth in urine

  Carlsson S; Wiklund NP; Engstrand L; Weitzberg E; Lundberg JON
• Article: INFECTION AND IMMUNITY. 2001;69(12):7832-7838

  Comparison of genetic divergence and fitness between two subclones of Helicobacter pylori

  Björkholm B; Lundin A; Sillén A; Guillemin K; Salama N; Rubio C; Gordon JI; Falk P; Engstrand L
• Article: GASTROENTEROLOGY. 2001;121(4):784-791

  Helicobacter pylori in gastric cancer established by CagA immunoblot as a marker of past infection

  Ekström AM; Held M; Hansson L; Engstrand L; Nyrén O
• Article: MICROBIAL PATHOGENESIS. 2001;31(2):103-107

  Escherichia coli S fimbriae do not contribute to intestinal colonization or translocation in the gnotobiotic rat

  Herías MV; Robertson AK; Midtvedt T; Wold AE
• Journal article: CURRENT OPINION IN MICROBIOLOGY. 2001;4(3):237-245

  Genomics and proteomics converge on Helicobacter pylori.

  Björkholm BM; Oh JD; Falk PG; Engstrand LG; Gordon JI
• Published conference paper: ATLA-ALTERNATIVES TO LABORATORY ANIMALS. 2001;29(3):287-289

  Molecular profiling and prediction of toxicity

  Schuppe-Koistinen I
• Article: JOURNAL OF PERIODONTOLOGY. 2001;72(4):454-460

  The characteristic cellular organization and CEACAM1 expression in the junctional epithelium of rats and mice are genetically programmed and not influenced by the bacterial microflora

  Heymann R; Wroblewski J; Terling C; Midtvedt T; Öbrink B
• Review: JOURNAL OF VIROLOGY. 2001;75(6):2584-2596

  Protein-DNA binding and CpG methylation at nucleotide resolution of latency-associated promoters Qp, Cp, and LMP1p of Epstein-Barr virus

  Salamon D; Takacs M; Ujvari D; Uhlig J; Wolf H; Minarovits J; Niller HH
• Article: CANCER RESEARCH. 2001;61(6):2684-2689

  Gastric cancer and human leukocyte antigen:: Distinct DQ and DR alleles are associated with development of gastric cancer and infection by Helicobacter pylori

  Magnusson PKE; Enroth H; Eriksson I; Held M; Nyrén O; Engstrand L; Hansson LE; Gyllensten UB
• Article: AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY. 2001;280(3):G368-G380

  Influence of microbial species on small intestinal myoelectric activity and transit in germ-free rats

  Husebye E; Hellström PM; Sundler F; Chen J; Midtvedt T
• Article: BIOLOGICAL CHEMISTRY. 2001;382(4):699-705

  Epigenetics of latent Epstein-Barr virus genomes:: High resolution methylation analysis of the bidirectional promoter region of latent membrane protein 1 and 2B genes

  Takacs M; Salamon D; Myöhänen S; Li H; Segesdi J; Ujvari D; Uhlig J; Niller HH; Wolf H; Berencsi G; Minarovits J
• Article: HEREDITAS. 2001;134(1):23-34

  Mouse chromosome 19 and distal rat chromosome 1:: a chromosome segment conserved in evolution

  Yamasaki Y; Helou K; Watanabe TK; Sjöling Å; Suzuki M; Okuno S; Ono T; Takagi T; Nakamura Y; Stahl F; Tanigami A
• Article: ACTA PAEDIATRICA. 2001;90(1):7-8

  Establishment of intestinal microbial functions at birth: bilirubin and bacteria

  Midtvedt T
• Article: BRITISH JOURNAL OF SURGERY. 2001;88(1):143-145

  The intestinal flora influences adhesion formation around surgical anastomoses

  Bothin C; Okada M; Midtvedt T; Perbeck L
• Article: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 2001;45(1):353-355

  In vitro pharmacodynamic studies of activities of ketolides HMR 3647 (Telithromycin) and HMR 3004 against extracellular or intracellular Helicobacter pylori.

  Gustafsson I; Engstrand L; Cars O
• Article: CANADIAN JOURNAL OF MICROBIOLOGY. 2001;47(1):86-90

  Chemostat modeling of Escherichia coli persistence in conventionalized mono-associated and streptomycin-treated mice

  Rang C; Midtvedt T; Molin S; Chao L
• Article: SCANDINAVIAN JOURNAL OF LABORATORY ANIMAL SCIENCE. 2001;28(2):75-84

  Probiotics in gnotobiotic mice:: Short-chain fatty acids production in vitro and in vivo

  Cardona ME; Midtvedt T; Norin E
• Editorial comment: SYMPOSIUM SERIES (SOCIETY FOR APPLIED MICROBIOLOGY). 2001;(30):80S-84S

  Helicobacter in water and waterborne routes of transmission.

  Engstrand L
• Review: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 2001;33(3):163-174

  An update on Helicobacter pylori microbiology and infection for the new millennium

  Enroth H; Engstrand L
• Article: CYTOGENETIC AND GENOME RESEARCH. 2001;95(3-4):202-209

  Analysis of chromosomal aberrations involving chromosome 1q31→q53 in a DMBA-induced rat fibrosarcoma cell line:: amplification and overexpression of Jak2

  Sjöling Å; Lindholm H; Samuelson E; Yamasaki Y; Watanabe TK; Tanigami A; Levan G
• Conference publication: GUT. 2001;49:A80

  A high prevalence of cagA+ Helicobacter pylori strains and association with histology among symptomatic children in Latvia

  Daugule I; Ejderhamn J; Rumba I; Engstrand L
• Conference publication: GUT. 2001;49:A77

  A high percentage of mixed infections with cagA+ and cagA- Helicobacter pylori strains among symptomatic children in Latvia

  Daugule I; Ejderhamn J; Rumba I; Engstrand L
• Conference publication: GASTROENTEROLOGY. 2001;120(5):A738

  Helicobacter pylori and symptoms in a random adult population evaluated by endoscopy. A report from the Kalixanda study.

  Storskrubb T; Aro P; Ronkainen J; Vieth MWR; Engstrand L; Talley NJ; Agrzus L
• Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2000;275(51):40478-40482

  Germ-free and colonized mice generate the same products from enteric prodefensins

  Pütsep K; Axelsson LG; Boman A; Midtvedt T; Normark S; Boman HG; Andersson M
• Journal article: JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY. 2000;15(12):h13

  HUMAN GASTRIC BIOPSIES CULTURED IN VITRO, AN USEFUL MODEL FOR STUDIES OF HELICOBACTER PYLORI INFLAMMATORY RESPONSES

  Olfat FO; Noslund E; Fredman J; Borén T; Engstrand L
• Journal article: JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY. 2000;15(12):h13

  IDENTIFICATION OF HELICOBACTER PYLORI PROTEINS, UPREGULATED UPON ADHERENCE TO EPITHELIAL CELLS

  Nilsson C; Akerlund T; Engstrand L; Normark S
• Journal article: JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY. 2000;15(12):h15

  GENOTYPING OF VIRULENCE FACTORS IN H. PYLORI USING A MICROARRAY WITH FOCUS ON THE CAG PATHOGENICITY ISLAND

  Sillèn A; Eriksson L; Engstrand L
• Article: CANCER RESEARCH. 2000;60(22):6376-6380

  Risk for gastric cancer after antibiotic prophylaxis in patients undergoing hip replacement

  Akre K; Signorello LB; Engstrand L; Bergström R; Larsson S; Eriksson BI; Nyrén O
• Article: CLINICAL AND EXPERIMENTAL ALLERGY. 2000;30(11):1590-1596

  Microflora-associated characteristics in faeces from allergic and nonallergic infants

  Böttcher MF; Nordin EK; Sandin A; Midtvedt T; Björkstén B
• Article: CARCINOGENESIS. 2000;21(11):2105-2111

  Effects of human intestinal flora on mutagenicity of and DNA adduct formation from food and environmental mutagens

  Hirayama K; Baranczewski P; Åkerlund JE; Midtvedt T; Möller L; Rafter J
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 2000;38(10):3555-3560

  Brachyspira aalborgi infection diagnosed by culture and 16S ribosomal DNA sequencing using human colonic biopsy specimens.

  Kraaz W; Pettersson B; Thunberg U; Engstrand L; Fellström C
• Article: INFECTION AND IMMUNITY. 2000;68(10):5881-5888

  Toxins, butyric acid, and other short-chain fatty acids are coordinately expressed and down-regulated by cysteine in Clostridium difficile

  Karlsson S; Lindberg A; Norin E; Burman LG; Åkerlund T
• Article: CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION. 2000;9(9):981-985

  Helicobacter pylori strain types and risk of gastric cancer:: A case-control study

  Enroth H; Kraaz W; Engstrand L; Nyrén O; Rohan T
• Article: HELICOBACTER. 2000;5(3):148-154

  Helicobacter pylori entry into human gastric epithelial cells:: A potential determinant of virulence, persistence, and treatment failures

  Björkholm N; Zhukhovitsky B; Löfman V; Hultén L; Enroth H; Block M; Rigo T; Falk P; Engstrand L
• Article: EQUINE VETERINARY JOURNAL. 2000;32(4):345-350

  Influence of bacitracin on microbial functions in the gastrointestinal tract of horses

  Collinder E; Berge GN; Gronvold B; Lindholm A; Midtvedt T; Norin E
• Letter: TIDSSKRIFT FOR DEN NORSKE LAEGEFORENING. 2000;120(17):2047-2049

  [Norwegian health services as seen from Stockholm].

  Midtvedt T
• Article: GENES CHROMOSOMES & CANCER. 2000;28(2):184-195

  Genomewide assessment of genetic alterations in DMBA-induced rat sarcomas:: Cytogenetic, CGH, and allelotype analyses reveal recurrent DNA copy number changes in rat chromosomes 1, 2, 4, and 7

  Walentinsson A; Sjöling A; Helou K; Klinga-Levan K; Levan G
• Article: JOURNAL OF BACTERIOLOGY. 2000;182(11):3210-3218

  Differences in genotypes of Helicobacter pylori from different human populations.

  Kersulyte D; Mukhopadhyay AK; Velapatiño B; Su W; Pan Z; Garcia C; Hernandez V; Valdez Y; Mistry RS; Gilman RH; Yuan Y; Gao H; Alarcón T; López-Brea M; Balakrish Nair G; Chowdhury A; Datta S; Shirai M; Nakazawa T; Ally R; Segal I; Wong BC; Lam SK; Olfat FO; Borén T; Engstrand L; Torres O; Schneider R; Thomas JE; Czinn S; Berg DE
• Article: EQUINE VETERINARY JOURNAL. 2000;32(3):222-227

  Six intestinal microflora-associated characteristics in sport horses

  Collinder E; Lindholm A; Midtvedt T; Norin E
• Article: CLINICAL MICROBIOLOGY AND INFECTION. 2000;6(5):265-267

  The use of AP-PCR and flaA-RFLP typing to investigate treatment failure in Helicobacter pylori infection

  Adamsson I; Edlund C; Seensalu R; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 2000;35(4):389-397

  Bacterial translocation in experimental shock is dependent on the strains in the intestinal flora

  Ljungdahl M; Lundholm M; Katouli M; Rasmussen I; Engstrand L; Haglund U
• Article: CLINICAL AND VACCINE IMMUNOLOGY. 2000;7(2):301-306

  Clustering of clinical strains of Helicobacter pylori analyzed by two-dimensional gel electrophoresis

  Enroth H; Åkerlund T; Sillén A; Engstrand L
• Article: JOURNAL OF EXPERIMENTAL ANIMAL SCIENCE. 2000;41(1-2):27-31

  Microsatellite marker analysis of allelic imbalance in a rat fibrosarcoma model

  Sjöling Å; Walentinsson A; Levan G; Klinga-Levan K
• Review: LAKARTIDNINGEN. 2000;97(3):150-153

  [Helicobacter pylori--the discovery still of current interest in the new millenium. Both good and bad bacteria in the stomach?].

  Enroth H; Engstrand L
• Article: ARCHIVES OF INTERNAL MEDICINE (CHICAGO, ILL. : 1908). 2000;160(1):105-109

  Are genetic influences on peptic ulcer dependent or independent of genetic influences for Helicobacter pylori infection?

  Malaty HM; Graham DY; Isaksson I; Engstrand L; Pedersen NL
• Article: DIGESTION. 2000;61(1):22-29

  40-to 100-kD protein(s) of Helicobacter pylori stimulate DNA synthesis in epithelial cell lines without affecting apoptosis

  Neopikhanov V; Samali A; Wreiber K; Engstrand L; Uribe A
• Editorial comment: SCANDINAVIAN JOURNAL OF LABORATORY ANIMAL SCIENCE. 2000;27(3):183-184

  Why use germfree or gnotobiotic animals in biomedical research?

  Norin E
• Conference publication: GUT. 2000;47:A65

  Prophylactic treatment of H-pylori infection with anti-H-pylori IgG-antibodies.

  Xu L; Olfat FO; Boren T; Engstrand L; Hammarström L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 1999;34(12):1183-1189

  Helicobacter pylori extracts reduce gastric mucosal blood flow by a nitric oxide-independent but mast cell- and platelet-activating factor receptor-dependent pathway in rats.

  Atuma C; Engstrand L; Holm L
• Article: CHEMICAL RESEARCH IN TOXICOLOGY. 1999;12(12):1182-1189

  Characterization of conjugated metabolites of benzo[a]pyrene in germ-free rat urine by liquid chromatography/electrospray tandem mass spectrometry

  Yang Y; Griffiths WJ; Midtvedt T; Sjövall J; Rafter J; Gustafsson J
• Article: JOURNAL OF INVESTIGATIVE SURGERY. 1999;12(6):319-325

  Vitamin A deficiency impairs colonic healing but not adhesion formation in germ-free and conventional rats

  Okada M; Bothin C; Blomhoff R; Kanazawa K; Midtvedt T
• Article: EUROPEAN JOURNAL OF IMMUNOLOGY. 1999;29(10):3285-3294

  CD1^high B cells:: a population of mixed origin

  Makowska A; Faizunnessa NN; Anderson P; Midtvedt T; Cardell S
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1999;96(17):9833-9838

  A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem

  Hooper LV; Xu J; Falk PG; Midtvedt T; Gordon JI
• Article: AMERICAN JOURNAL OF PHYSIOLOGY. 1999;277(2):G375-G382

  Adherent surface mucus gel restricts diffusion of macromolecules in rat duodenum in vivo.

  Flemström G; Hällgren A; Nylander O; Engstrand L; Wilander E; Allen A
• Article: INTERNATIONAL JOURNAL OF CANCER. 1999;82(1):1-5

  Epstein-Barr virus and cytomegalovirus in relation to testicular-cancer risk: A nested case-control study

  Akre O; Lipworth L; Tretli S; Linde A; Engstrand L; Adami HO; Melbye M; Andersen A; Ekbom A
• Article: BRITISH JOURNAL OF SURGERY. 1999;86(7):961-965

  Experimental study of the influence of intestinal flora on the healing of intestinal anastamoses

  Okada M; Bothin C; Kanazawa K; Midtvedt T
• Article: JOURNAL OF BACTERIOLOGY. 1999;181(12):3710-3715

  The morphological transition of Helicobacter pylori cells from spiral to coccoid is preceded by a substantial modification of the cell wall

  Costa K; Bacher G; Allmaier G; Dominguez-Bello MG; Engstrand L; Falk P; de Pedro MA; García-del Portillo F
• Article: CLINICAL INFECTIOUS DISEASES. 1999;28(6):1305-1307

  Occurrence of resistance mutation and clonal expansion in Helicobacter pylori multiple-strain infection:: A potential risk in clarithromycin-based therapy

  Enroth H; Björkholm B; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 1999;34(6):580-586

  The effect of faecal enema on five microflora-associated characteristics in patients with antibiotic-associated diarrhoea

  Gustafsson A; Berstad A; Lund-Tonnesen S; Midtvedt T; Norin E
• Article: FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY. 1999;24(2):175-181

  pH-dependent binding of Helicobacter pylori to pig gastric mucins

  Nordman H; Borén T; Davies JR; Engstrand L; Carlstedt I
• Article: JOURNAL OF INVESTIGATIVE SURGERY. 1999;12(3):147-150

  Postsurgical adhesion formation in germfree and ex-germfree rats - A study using three scoring scales

  Bothin CG; Okada M; Midtvedt T
• Article: CLINICAL AND VACCINE IMMUNOLOGY. 1999;6(3):434-436

  Estimation of growth rates of Escherichia coli BJ4 in streptomycin-treated and previously germfree mice by in situ rRNA hybridization

  Rang CU; Licht TR; Midtvedt T; Conway PL; Chao L; Krogfelt KA; Cohen PS; Molin S
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 1999;37(5):1381-1384

  Evaluation of human seroreactivity to Bartonella species in Sweden.

  Holmberg M; McGill S; Ehrenborg C; Wesslén L; Hjelm E; Darelid J; Blad L; Engstrand L; Regnery R; Friman G
• Article: JOURNAL OF APPLIED PHYSIOLOGY. 1999;86(4):1311-1318

  Gas supersaturation in the cecal wall of mice due to bacterial CO₂ production

  Rasmussen H; Kvarstein G; Johnsen H; Dirven H; Midtvedt T; Mirtaheri P; Tonnessen TI
• Article: HELICOBACTER. 1999;4(1):7-16

  In vitro aging of Helicobacter pylori:: Changes in morphology, intracellular composition and surface properties

  Enroth H; Wreiber K; Rigo R; Risberg D; Uribe A; Engstrand L
• Article: FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY. 1999;23(3):253-257

  13C-urea breath test results in pigs challenged with Helicobacter pylori or other urease producing bacteria.

  Enroth H; Berglund H; Bergström M; Kraaz W; Tracz P; Gustafsson S; Engstrand L
• Review: LAKARTIDNINGEN. 1999;96(6):582-584

  [Development of resistant Helicobacter pylori in Sweden. Tendency toward increasing resistance to clarithromycin].

  Wreiber K; Olsson-Liljequist B; Engstrand L
• Article: DIGESTIVE DISEASES AND SCIENCES. 1999;44(1):102-107

  One stomach one strain -: Does Helicobacter pylori strain variation influence disease outcome?

  Enroth H; Nyrén O; Engstrand L
• Conference publication: GUT. 1999;45:A28

  Cag PAI negative Helicobacter pylori isolates only colonize Lewis B-producing mice in the absence of a normal microflora

  Björkholm B; Engstrand L; Midtvedt T; Falk P
• Conference publication: GUT. 1999;45:A27-A28

  Reduced fitness of clarithromycin resistant Helicobacter pylori in competitive infection with an isogenic isolate in a transgenic mouse model

  Björkholm B; Strand ML; Nygård M; Andersson D; Engstrand L
• Conference publication: GUT. 1999;45:A21

  Microarray for genetic analysis of the Cag pathogenicity island in H-pylori

  Sillén A; Dieckmann A; Alzhanov D; Engstrand L
• Conference publication: GUT. 1999;45:A71-A72

  Conventional elisa serotesting underestimates the association between H. pylori infection and gastric cancer risk in case-control studies

  Held M; Ekström AM; Granath F; Engstrand L; Hansson LE; Nyrén O
• Conference publication: GUT. 1999;45:A6

  Search for disease-specific marker proteins in Helicobacter pylori by 2-D gel electrophoresis

  Enroth H; Sillén A; Åkerlund T; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 1998;33(12):1256-1261

  Extracts of Helicobacter pylori reduce gastric mucosal blood flow through a VacA- and CagA-independent pathway in rats.

  Atuma C; Engstrand L; Holm L
• Review: MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. 1998;62(4):1157-1170

  Creating and maintaining the gastrointestinal ecosystem: What we know and need to know from gnotobiology

  Falk PG; Hooper LV; Midtvedt T; Gordon JI
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 1998;36(12):3689-3690

  Rapid PCR detection of Helicobacter pylori-associated virulence and resistance genes directly from gastric biopsy material

  Björkholm B; Befrits R; Jaup B; Engstrand L
• Article: AMERICAN JOURNAL OF EPIDEMIOLOGY. 1998;148(8):793-797

  Co-twin study of the effect of environment and dietary elements on acquisition of Helicobacter pylori infection

  Malaty HM; Graham DY; Isaksson I; Engstrand L; Pedersen NL
• Article: EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY. 1998;10(10):837-841

  Cancer-associated strains of Helicobacter pylori stimulate DNA synthesis in IEC-6 cells

  Bark J; Enroth H; Engstrand L; Uribe A
• Article: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 1998;48(3):277-282

  Increased antibody production against gut-colonizing Escherichia coli in the presence of the anaerobic bacterium Peptostreptococcus

  Herías MV; Midtvedt T; Hanson L; Wold AE
• Article: JOURNAL OF APPLIED MICROBIOLOGY. 1998;85(2):282-286

  Presence of Helicobacter species DNA in Swedish water

  Hultén K; Enroth H; Nyström T; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 1998;33(7):721-727

  Faecal short-chain fatty acids in patients with antibiotic-associated diarrhoea, before and after faecal enema treatment

  Gustafsson A; Lund-Tonnesen S; Berstad A; Midtvedt T; Norin E
• Other: NEPHROLOGY DIALYSIS TRANSPLANTATION. 1998;13(7):1637-1641

  Routine perioperative antibiotic prophylaxis in renal transplantation

  Midtvedt K; Hartmann A; Midtvedt T; Brekke IB
• Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 1998;247(2):481-486

  Studies on the mechanism of oxidative modification of human glyceraldehyde-3-phosphate dehydrogenase by glutathione: Catalysis by glutaredoxin

  Lind C; Gerdes R; Schuppe-Koistinen I; Cotgreave IA
• Editorial comment: TRANSFUSION MEDICINE. 1998;8(1):1-3

  Serious bacterial complications from blood components--how do they occur?

  Högman CF; Engstrand L
• Article: MEDICAL HYPOTHESES. 1998;50(2):135-137

  Biological strategies expressed by different Streptococcus pyogenes strains: an explanation of the epidemiology.

  Osterlund A; Engstrand L
• Article: JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY. 1998;13(1):11-29

  The mechanism of binding of low-molecular-weight active site inhibitors to human α-thrombin

  Nilsson T; Sjoling-Ericksson A; Deinum J
• Article: SCIENCE. 1998;279(5349):373-377

  Helicobacter pylori adhesin binding fucosylated histo-blood group antigens revealed by retagging.

  Ilver D; Arnqvist A; Ogren J; Frick IM; Kersulyte D; Incecik ET; Berg DE; Covacci A; Engstrand L; Borén T
• Article: DIGESTION. 1998;59(1):33-39

  Helicobacter pylori stimulates DNA synthesis in a small intestinal cell line in vitro

  Brännström J; Zachrisson K; Hultén K; Engstrand L; Uribe A
• Article: JOURNAL OF INFECTIOUS DISEASES. 1998;177(1):247-252

  Virulence and colonization-associated properties of Helicobacter pylori isolated from children and adolescents

  Çelik J; Su B; Tirén U; Finkel Y; Thoresson AC; Engstrand L; Sandstedt B; Bernander S; Normark S
• Article: CLINICAL MICROBIOLOGY AND INFECTION. 1998;4(10):594-598

  Effect of clindamycin given alone or with Lactobacillus delbrueckii and Streptococcus thermophilus on 7alpha-dehydroxylation of bile acids in rats.

  Gustafsson A; Norin E; Midtvedt T
• Article: APMIS. 1997;105(12):951-955

  Rapid detection of Helicobacter pylori infection in serum and whole-blood samples.

  Enroth H; Engstrand L
• Article: HELICOBACTER. 1997;2(4):188-193

  Combination treatment with ranitidine is highly efficient against Helicobacter pylori despite negative impact of macrolide resistance.

  Hultén K; Jaup B; Stenquist B; Engstrand L
• Article: ACTA OTO-LARYNGOLOGICA. 1997;117(6):883-888

  An intracellular sanctuary for Streptococcus pyogenes in human tonsillar epithelium--studies of asymptomatic carriers and in vitro cultured biopsies.

  Osterlund A; Engstrand L
• Article: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 1997;41(11):2550-2553

  Macrolide resistance in Helicobacter pylori: mechanism and stability in strains from clarithromycin-treated patients.

  Hultén K; Gibreel A; Sköld O; Engstrand L
• Article: AMERICAN JOURNAL OF CLINICAL PATHOLOGY. 1997;108(5):504-509

  Is the sanctuary where Helicobacter pylori avoids antibacterial treatment intracellular?

  Engstrand L; Graham D; Scheynius A; Genta RM; ElZaatari F
• Article: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 1997;46(4):349-357

  Regional phenotypic specialization of intraepithelial lymphocytes in the rat intestine does not depend on microbial colonization

  Helgeland L; Vaage JT; Rolstad B; Halstensen TS; Midtvedt T; Brandtzaeg P
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 1997;35(10):2695-2697

  Diagnostic accuracy of a rapid whole-blood test for detection of Helicobacter pylori.

  Enroth H; Rigo R; Hultén K; Engstrand L
• Article: APMIS. 1997;105(9):717-722

  Sulphasalazine, olsalazine and sulphapyridine induce mitogenic actions in the rat intestinal epithelium

  Benno P; Alam M; Midtvedt T; Uribe A
• Article: NATURE MEDICINE. 1997;3(8):930-931

  Bacterium-host interactions monitored by time-lapse photography

  Lofman C; Rigo R; Block M; Hulten K; Enroth H; Engstrand L
• Article: UROLOGY. 1997;50(2):189-191

  Urinary nitrite: More than a marker of infection

  Lundberg JON; Carlsson S; Engstrand L; Morcos E; Wiklund NP; Weitzberg E
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 1997;32(7):691-699

  Endogenous prostaglandins and microflora modulate DNA synthesis and neuroendocrine peptides in the rat gastrointestinal tract

  Uribe A; Alam M; Midtvedt T; Smedfors B; Theodorsson E
• Article: LARYNGOSCOPE. 1997;107(5):640-647

  Intracellular reservoir of Streptococcus pyogenes in vivo: A possible explanation for recurrent pharyngotonsillitis

  Osterlund A; Popa R; Nikkila T; Scheynius A; Engstrand L
• Article: INFECTION AND IMMUNITY. 1997;65(2):531-536

  Escherichia coli K5 capsule expression enhances colonization of the large intestine in the gnotobiotic rat

  Herias MV; Midtvedt T; Hanson LA; Wold AE
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 1997;29(2):202-204

  Detection of Mycobacterium avium complex in cerebrospinal fluid of a sarcoid patient by specific polymerase chain reaction assays.

  el-Zaatari FA; Graham DY; Samuelsson K; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 1997;29(2):147-151

  The diagnostic value of enzyme immunoassay and immunoblot in monitoring eradication of Helicobacter pylori

  Sorberg M; Engstrand L; Strom M; Jonsson KA; Jorbeck H; Granstrom M
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY, SUPPLEMENT. 1997;32:25-27

  Germ-free and conventional animal models for intestinal carbohydrate disposition

  Midtvedt T
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 1997;29(5):513-516

  Susceptibility of Chlamydia pneumoniae to azithromycin and doxycycline: methodological aspects on the determination of minimal inhibitory and minimal bactericidal concentrations.

  Nyström-Rosander C; Hultén K; Gustavsson I; Cars O; Engstrand L; Hjelm E
• Published conference paper: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES, SUPPLEMENT. 1997;104:13-14

  Assay of antibiotic susceptibility of Chlamydia pneumoniae.

  Hjelm E; Hultén K; Nyström-Rosander C; Gustafsson I; Engstrand L; Cars O
• Article: SCIENCE. 1997;276(5314):965

  Interactions between epithelial cells and bacteria, normal and pathogenic - Response

  Gordon JI; Hooper LV; Bry L; Midtvedt T; Falk PG
• Conference publication: AMERICAN JOURNAL OF EPIDEMIOLOGY. 1997;145(11):168

  Are there genes for peptic ulcer disease in common with genes for Helicobacter pylori infection: A twin study

  Malaty HM; Isaksson I; Engstrand L; Graham DY; Pedersen NL
• Conference publication: GASTROENTEROLOGY. 1997;112(4):A206

  Are the genes for peptic ulcer disease and the genes for susceptibility to H-pylori infection the same? - A twin study.

  Malaty HM; Graham DY; Isaksson I; Engstrand L; Pedersen NL
• Conference publication: GASTROENTEROLOGY. 1997;112(4):A207

  Associations of peptic ulcer disease and H-pylori infection with chronic lung disease, rheumatoid arthritis, liver disease, myocardial disease, and diabetes mellitus - A twin study.

  Malaty HM; Graham DY; Isaksson I; Engstrand L; Pedersen NL
• Article: IMMUNOLOGY. 1996;89(4):494-501

  Microbial colonization influences composition and T-cell receptor VP repertoire of intraepithelial lymphocytes in rat intestine

  Helgeland L; Vaage JT; Rolstad B; Midtvedt T; Brandtzaeg P
• Article: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 1996;40(12):2727-2731

  New pharmacokinetic in vitro model for studies of antibiotic activity against intracellular microorganisms.

  Hultén K; Rigo R; Gustafsson I; Engstrand L
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 1996;9(6):271-277

  Effect of bacterial infection and administration of a probiotic on faecal short-chain fatty acids

  Siigur U; Tamm E; Torm S; Lutsar I; Salminen S; Midtvedt T
• Article: SCANDINAVIAN JOURNAL OF WORK ENVIRONMENT & HEALTH. 1996;22(5):364-368

  Prevalence of Helicobacter pylori infection among sewage workers.

  Friis L; Engstrand L; Edling C
• Article: TRANSFUSION MEDICINE REVIEWS. 1996;10(4):259-275

  Factors affecting growth of Yersinia enterocolitica in cellular blood products.

  Högman CF; Engstrand L
• Article: SCIENCE. 1996;273(5280):1380-1383

  A model of host-microbial interactions in an open mammalian ecosystem

  Bry L; Falk PG; Midtvedt T; Gordon JI
• Article: MAMMALIAN GENOME. 1996;7(9):710-711

  Sublocalization of the rat brown gene (B=Tyrp1) by linkage mapping

  Sjoling A; KlingaLevan K; Levan G
• Article: HELICOBACTER. 1996;1(3):183-186

  Egg passage of rodshaped and coccoid forms of Helicobacter pylori: preliminary studies.

  Enroth H; Engstrand L
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 1996;9(5):225-237

  The role of intestinal bacteria, bacterial translocation and endotoxin in dextran sodium sulphate-induced colitis in the mouse

  Axelsson LG; Midtvedt T; BylundFellenius AC
• Article: EUROPEAN HEART JOURNAL. 1996;17(6):902-910

  An increase in sudden unexpected cardiac deaths among young Swedish orienteers during 1979-1992

  Wesslen L; Pahlson C; Lindquist O; Hjelm E; Gnarpe J; Larsson E; Baandrup U; Eriksson L; Fohlman J; Engstrand L; Linglof T; NystromRosander C; Gnarpe H; Magnius L; Rolf C; Friman G
• Article: GASTROENTEROLOGY. 1996;110(4):1031-1035

  Helicobacter pylori in the drinking water in Peru.

  Hulten K; Han SW; Enroth H; Klein PD; Opekun AR; Gilman RH; Evans DG; Engstrand L; Graham DY; El-Zaatari FA
• Article: JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 1996;37(3):483-489

  In-vitro activity of azithromycin in against intracellular Helicobacter pylori.

  Hulten K; Cars O; Hjelm E; Engstrand L
• Article: FEMS MICROBIOLOGY ECOLOGY. 1996;19(2):133-140

  Transfer of the plasmid RP1 in vivo in germ free mice and in vitro in gut extracts and laboratory media

  Rang CU; Kennan RM; Midtvedt T; Chao L; Conway PL
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 1996;9(1):9-17

  Effect of olestra on faecal water and short-chain fatty acids

  Siigur U; Norin KE; Allgood G; Schlagheck T; Midtvedt T
• Article: CURRENT OPINION IN GASTROENTEROLOGY. 1996;12:21-23

  Immunological aspects

  Engstrand L; deKorwin JD
• Article: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 1996;9(6):295-303

  Effect of olestra upon intestinal microecology as reflected by five microflora associated characteristics in man

  Siigur U; Norin KE; Allgood G; Schlagheck T; Midtvedt T
• Conference publication: GASTROENTEROLOGY. 1996;110(4):A184

  Genetic and environmental influences of peptic ulcer disease.

  Malaty HM; Pedersen NL; Engstrand L; Isaksson I; Graham DY
• Conference publication: GASTROENTEROLOGY. 1996;110(4):A183

  Cotwin study of the effect of childhood and current socioeconomic status on Helicobacter pylori acquisition.

  Malaty HM; Engstrand L; Pedersen NL; Isaksson I; Graham DY
• Conference publication: GASTROENTEROLOGY. 1996;110(4):A871

  Helicobacter pylori stimulates DNA synthesis ln a small intestinal cell line.

  Brannstrom J; Zachrisson K; Engstrand L; Uribe A
• Article: INFECTION AND IMMUNITY. 1995;63(12):4781-4789

  ROLE OF ESCHERICHIA-COLI P-FIMBRIAE IN INTESTINAL COLONIZATION IN GNOTOBIOTIC-RATS

  HERIAS MV; MIDTVEDT T; HANSON LA; WOLD AE
• Other: TRANSFUSION. 1995;35(10):871-873

  Retrograde transmission of Proteus mirabilis during platelet transfusion and the use of arbitrarily primed polymerase chain reaction for bacteria typing in suspected cases of transfusion transmission of infection.

  Engstrand M; Engstrand L; Högman CF; Hambraeus A; Branth S
• Article: TIDSSKRIFT FOR DEN NORSKE LAEGEFORENING. 1995;115(23):2896-2898

  [Microbiology and ecology--the microbe aspect].

  Midtvedt T
• Article: ACTA OTO-LARYNGOLOGICA. 1995;115(5):685-688

  Intracellular penetration and survival of Streptococcus pyogenes in respiratory epithelial cells in vitro.

  Osterlund A; Engstrand L
• Article: GASTROENTEROLOGY. 1995;109(3):885-888

  Prevalence of Helicobacter pylori infection in subtypes of gastric cancer.

  Hansson LR; Engstrand L; Nyrén O; Lindgren A
• Article: JOURNAL OF CLINICAL MICROBIOLOGY. 1995;33(8):2162-2165

  Immunomagnetic separation and PCR for detection of Helicobacter pylori in water and stool specimens.

  Enroth H; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 1995;30(8):752-757

  Helicobacter pylori seropositivity among Swedish adults with and without abdominal symptoms. A population-based epidemiologic study.

  Agréus L; Engstrand L; Svärdsudd K; Nyrén O; Tibblin G
• Article: JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION. 1995;20(4):394-402

  INTESTINAL MICROBIAL BILE-ACID TRANSFORMATION IN HEALTHY INFANTS

  JONSSON G; MIDTVEDT AC; NORMAN A; MIDTVEDT T
• Published conference paper: FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY. 1995;10(3-4):265-270

  Potential animal models of Helicobacter pylori infection in immunological and vaccine research.

  Engstrand L
• Article: CELL BIOLOGY AND TRANSLATIONAL MEDICINE, VOL 14: STEM CELLS IN LINEAGE SPECIFIC DIFFERENTIATION AND DISEASE. 1995;371A:459-462

  Transient appearance of circulating interleukin-6 and tumor necrosis factor in germ-free C3H/HeJ and C3H/HeN mice upon intestinal exposure to E. coli.

  Dahlgren UI; Midtvedt T; Tarkowski A
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES. 1995;27(2):119-121

  DNA fingerprinting of Streptococcus pyogenes from patients with recurrent pharyngotonsillitis by means of random amplified Polymorphic DNA analysis.

  Osterlund A; Engstrand L
• Article: SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES, SUPPLEMENT. 1995;98:27-29

  Mycobacterium paratuberculosis and Crohn's disease.

  Engstrand L
• Editorial comment: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 1995;8:S43-S44

  WORKING GROUP-VII - FOOD-PRODUCTS

  BENBADIS L; BOISEN F; COHEN P; CONWAY P; VANDRIESCHE E; DUVALIFLAH Y; GASSON MJ; HUGGETT A; JONAS D; KNUDSEN I; MAYERS P; NIELSEN EM; NORIN E; ROSDAHL VT; SCHLUNDT J; SAADBYE P
• Editorial comment: MICROBIAL ECOLOGY IN HEALTH AND DISEASE. 1995;8:S33-S34

  WORKING GROUP-I AND GROUP-II - MICROBIAL COLONIZATION OF THE BODY

  BENBADIS L; COHEN PS; CONTREPOIS M; CONWAY P; DUVALIFLAH Y; GASSON MJ; GUNDERSEN WB; HENTGES DJ; JACOBSEN BL; KLEMM P; KRIVAN H; KROGFELDT KA; LINTERMANNS P; NIELSEN EM; NORIN E; SCHLUNDT J; SAADBYE P; VUUST J
• Journal article: ANNALS OF INTERNAL MEDICINE. 1994;120(12):982-986

  HELICOBACTER-PYLORI INFECTION - GENETIC AND ENVIRONMENTAL-INFLUENCES

  MALATY HM; ENGSTRAND L; PEDERSEN NL; GRAHAM DY
• Journal article: GASTROENTEROLOGY. 1994;106(5):1399-1400

  Reply

  Nyrén O; Hansson L-E; Engstrand L
• Journal article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY. 1993;28(12):1105-1111

  LOCAL AND SYSTEMIC IMMUNE-RESPONSE IN HELICOBACTER-PYLORI-ASSOCIATED CHRONIC GASTRITIS BEFORE AND AFTER TREATMENT

  ENGSTRAND L; GUSTAVSSON S; SCHWAN A; SCHEYNIUS A
• Journal article: GASTROENTEROLOGY. 1993;105(4):1098-1103

  Helicobacter pylori infection: independent risk indicator of gastric adenocarcinoma.

  Hansson LE; Engstrand L; Nyrén O; Evans DJ; Lindgren A; Bergström R; Andersson B; Athlin L; Bendtsen O; Tracz P
• Journal article: BIOCHEMICAL PHARMACOLOGY. 1992;44(9):1757-1764

  PROTEIN-SPECIFIC S-THIOLATION IN HUMAN ENDOTHELIAL-CELLS DURING OXIDATIVE STRESS

  SCHUPPE I; MOLDEUS P; COTGREAVE IA
• Journal article: AMERICAN JOURNAL OF GASTROENTEROLOGY. 1991;86(8):976-980

  AN INCREASED NUMBER OF GAMMA-DELTA T-CELLS AND GASTRIC EPITHELIAL-CELL EXPRESSION OF THE GROEL STRESS-PROTEIN HOMOLOG IN HELICOBACTER-PYLORI-ASSOCIATED CHRONIC GASTRITIS OF THE ANTRUM

  ENGSTRAND L; SCHEYNIUS A; PAHLSON C
• Journal article: BIOCHEMICAL PHARMACOLOGY. 1991;42(1):13-16

  THE METABOLISM OF N-ACETYLCYSTEINE BY HUMAN ENDOTHELIAL-CELLS

  COTGREAVE I; MOLDEUS P; SCHUPPE I
• Journal article: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 1991;33(2):237-241

  GASTRIC EPITHELIAL-CELLS IN HELICOBACTER-PYLORI-ASSOCIATED GASTRITIS EXPRESS HLA-DR BUT NOT ICAM-1

  SCHEYNIUS A; ENGSTRAND L
• Journal article: INFECTION AND IMMUNITY. 1990;58(6):1763-1768

  INOCULATION OF BARRIER-BORN PIGS WITH HELICOBACTER-PYLORI - A USEFUL ANIMAL-MODEL FOR GASTRITIS TYPE-B

  ENGSTRAND L; GUSTAVSSON S; JORGENSEN A; SCHWAN A; SCHEYNIUS A
• Conference publication: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 1990;32(4):390

  PRESENCE OF 65-KDA HEAT-SHOCK PROTEIN IN GASTRIC EPITHELIAL-CELLS - AN ANTIGEN FOR GAMMA-DELTA-T-CELLS IN HELICOBACTER-PYLORI ASSOCIATED GASTRITIS

  ENGSTRAND L; SCHEYNIUS A; PAHLSON C
• Journal article: INFECTION AND IMMUNITY. 1989;57(3):827-832

  ASSOCIATION OF CAMPYLOBACTER-PYLORI WITH INDUCED EXPRESSION OF CLASS-II TRANSPLANTATION ANTIGENS ON GASTRIC EPITHELIAL-CELLS

  ENGSTRAND L; SCHEYNIUS A; PAHLSON C; GRIMELIUS L; SCHWAN A; GUSTAVSSON S
• Journal article: SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY, SUPPLEMENT. 1988;142:50-52

  Monoclonal antibodies for detection of Campylobacter pylori in biopsy smears and frozen sections.

  Engstrand L; Påhlson C; Schwan A; Gustavsson S
• Journal article: LANCET. 1950;1(6615):1071-1073

  Excretion of intravenously administered dextran.

  ENGSTRAND L; ABERG B
• Journal article: ACTA PHYSIOLOGICA. 1942;3(3):224-236

  Untersuchimgen iifoer die periphere Blut‐versorgung des Herzmuskels

  ENGSTRAND L
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