Selected publications - Centre for nutrition

Selected publications from Rongrong Fan

Antagonistic action of GPS2 and KDM1A at enhancers governs alternative macrophage activation by interleukin 4.
Huang Z, Efthymiadou A, Liang N, Fan R, Treuter E
Nucleic Acids Res 2023 Feb;51(3):1067-1086

An optimized 4C-seq protocol based on cistrome and epigenome data in the mouse RAW264.7 macrophage cell line.
Huang Z, Wang C, Treuter E, Fan R
STAR Protoc 2022 Jun;3(2):101338

The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages.
Huang Z, Liang N, Goñi S, Damdimopoulos A, Wang C, Ballaire R, Jager J, Niskanen H, Han H, Jakobsson T, Bracken AP, Aouadi M, Venteclef N, Kaikkonen MU, Fan R, Treuter E
Mol Cell 2021 Mar;81(5):953-968.e9

PPARα and NCOR/SMRT corepressor network in liver metabolic regulation.
Kang Z, Fan R
FASEB J 2020 Jul;34(7):8796-8809

Hepatocyte-specific loss of GPS2 in mice reduces non-alcoholic steatohepatitis via activation of PPARα.
Liang N, Damdimopoulos A, Goñi S, Huang Z, Vedin LL, Jakobsson T, Giudici M, Ahmed O, Pedrelli M, Barilla S, Alzaid F, Mendoza A, Schröder T, Kuiper R, Parini P, Hollenberg A, Lefebvre P, Francque S, Van Gaal L, Staels B, Venteclef N, Treuter E, Fan R
Nat Commun 2019 Apr;10(1):1684

Selected publications from Ioannis Ioakeimidis

Two Swedish Cities Using a Smartphone Application: A Cross-Sectional Study. 
Spolander S, Fagerberg P, Langlet B, Sarafis I, Ioakimidis I. Investigating Children’s Exposure to Outdoor Food Marketing in JMIR mHealth and uHealth, Accepted for publication, pre-print, Feb 2026. 

Monitoring cancer-related fatigue and quality of life in breast and prostate cancer patients after primary treatment: a study protocol for the REBECCA trials in Norway.
Stensland M, Bru KF, Austdal M, Dahl IH, Jonsdottir K, Lende TH, Heimvik C, Elve I, Omdal R, van der Giezen M, Kvivik I, Tangeland B, Davidsen L, Hashemi M, Cais A, van Dijk KJ, Seyoum Y, Blåfjelldal V, Sola ST, Papadopoulos A, Kiriakidou N, Ioakeimidis I, Diou C, Sarafis I, Delopoulos A, Janssen EAM, Gilje B, Tjensvoll K
Clin Exp Med 2026 Feb;26(1):133

Can bite detection algorithms substitute manual video annotations in elderly people with and without Parkinson’s disease? An experimental study. 
Ioakeimidis I, Konstantinidis D, Fagerberg P, Klingelhoefer L, Langlet B, Rotter E, Spolander S, Dimitropoulos K. InProceedings of the 17th International Conference on PErvasive Technologies Related to Assistive Environments 2024 Jun 26 (pp. 554-561). 

Ultra-Processed Food vs. Fruit and Vegetable Consumption before and during the COVID-19 Pandemic among Greek and Swedish Students.
Dhammawati F, Fagerberg P, Diou C, Mavrouli I, Koukoula E, Lekka E, Stefanopoulos L, Maglaveras N, Heimeier R, Karavidopoulou Y, Ioakimidis I
Nutrients 2023 May;15(10):

Toward Systems Models for Obesity Prevention: A Big Role for Big Data.
Tufford AR, Diou C, Lucassen DA, Ioakimidis I, O'Malley G, Alagialoglou L, Charmandari E, Doyle G, Filis K, Kassari P, Kechadi T, Kilintzis V, Kok E, Lekka I, Maglaveras N, Pagkalos I, Papapanagiotou V, Sarafis I, Shahid A, van 't Veer P, Delopoulos A, Mars M
Curr Dev Nutr 2022 Sep;6(9):nzac123

Selected publications from Andreas Lennartsson

One Omics Approach Does Not Rule Them All: The Metabolome and the Epigenome Join Forces in Haematological Malignancies.
Kalushkova A, Nylund P, Párraga AA, Lennartsson A, Jernberg-Wiklund H
Epigenomes 2021 Oct 8;5(4):22

Functional annotation of human long noncoding RNAs via molecular phenotyping.
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, et al.
Genome Res 2020 Jul;30(7):1060-1072

AML displays increased CTCF occupancy associated with aberrant gene expression and transcription factor binding.
Mujahed H, Miliara S, Neddermeyer A, Bengtzén S, Nilsson C, Deneberg S, Cordeddu L, Ekwall K, Lennartsson A, Lehmann S
Blood 2020 Jul;136(3):339-352

A regulatory role for CHD2 in myelopoiesis.
Shahin Varnoosfaderani F, Palau A, Dong W, Persson J, Durand-Dubief M, Svensson JP, Lennartsson A
Epigenetics 2020 ;15(6-7):702-714

Selected publications from Marie Löf

Effectiveness of a Smartphone App (MINISTOP 2.0) integrated in primary child health care to promote healthy diet and physical activity behaviors and prevent obesity in preschool-aged children: randomized controlled trial.
Alexandrou C, Henriksson H, Henström M, Henriksson P, Delisle Nyström C, Bendtsen M, Löf M
Int J Behav Nutr Phys Act 2023 Feb;20(1):22

Revisiting the cross-sectional and prospective association of physical activity with body composition and physical fitness in preschoolers: A compositional data approach.
Migueles JH, Delisle Nyström C, Leppänen MH, Henriksson P, Löf M
Pediatr Obes 2022 Feb;():e12909

Effectiveness of a Smartphone App to Promote Healthy Weight Gain, Diet, and Physical Activity During Pregnancy (HealthyMoms): Randomized Controlled Trial.
Sandborg J, Söderström E, Henriksson P, Bendtsen M, Henström M, Leppänen MH, Maddison R, Migueles JH, Blomberg M, Löf M
JMIR Mhealth Uhealth 2021 03;9(3):e26091

Cross-sectional examination of 24-hour movement behaviours among 3- and 4-year-old children in urban and rural settings in low-income, middle-income and high-income countries: the SUNRISE study protocol.
Okely T, Reilly JJ, Tremblay MS, Kariippanon KE, Draper CE, El Hamdouchi A, Florindo AA, Green JP, Guan H, Katzmarzyk PT, Lubree H, Pham BN, Suesse T, Willumsen J, Basheer M, Calleia R, Chong KH, Cross PL, Nacher M, Smeets L, Taylor E, Abdeta C, Aguilar-Farias N, Baig A, Bayasgalan J, Chan CHS, Chathurangana PWP, Chia M, Ghofranipour F, Ha AS, Hossain MS, Janssen X, Jáuregui A, Katewongsa P, Kim DH, Kim TV, Koh D, Kontsevaya A, Leyna GH, Löf M, Munambah N, Mwase-Vuma T, Nusurupia J, Oluwayomi A, Del Pozo-Cruz B, Del Pozo-Cruz J, Roos E, Shirazi A, Singh P, Staiano A, Suherman A, Tanaka C, Tang HK, Teo WP, Tiongco MM, Tladi D, Turab A, Veldman SLC, Webster EK, Wickramasinghe P, Widyastari DA
BMJ Open 2021 10;11(10):e049267

Effectiveness of a 3-Month Mobile Phone-Based Behavior Change Program on Active Transportation and Physical Activity in Adults: Randomized Controlled Trial.
Ek A, Alexandrou C, Söderström E, Bergman P, Delisle Nyström C, Direito A, Eriksson U, Henriksson P, Maddison R, Trolle Lagerros Y, Bendtsen M, Löf M
JMIR Mhealth Uhealth 2020 06;8(6):e18531

Mobile-based intervention intended to stop obesity in preschool-aged children: the MINISTOP randomized controlled trial.
Nyström CD, Sandin S, Henriksson P, Henriksson H, Trolle-Lagerros Y, Larsson C, Maddison R, Ortega FB, Pomeroy J, Ruiz JR, Silfvernagel K, Timpka T, Löf M
Am J Clin Nutr 2017 06;105(6):1327-1335

Selected publications from Vasileios Papapanagiotou

A System for Objectively Measuring Behavior and the Environment to Support Large-Scale Studies on Childhood Obesity.
Papapanagiotou V, Sarafis I, Alagialoglou L, Gkolemis V, Diou C, Delopoulos A
IEEE J Biomed Health Inform 2025 Apr;29(4):2969-2980

Which Augmentation Should I Use? An Empirical Investigation of Augmentations for Self-Supervised Phonocardiogram Representation Learning
Ballas, V. Papapanagiotou, and C. Diou. . In: IEEE Access 12 (2024), pp. 193459–193472. DOI: 10.1109/ACCESS.2024.3519297.

Transportation Mode Recognition Based on Low-Rate Acceleration and Location Signals With an Attention-Based Multiple-Instance Learning Network
C. Siargkas, V. Papapanagiotou, and A. Delopoulos. . In: IEEE Transactions on Intelligent Transportation Systems 25.10 (2024), pp. 14376–14388. 

Prediabetes detection in unconstrained conditions using wearable sensors
D. Tatli, V. Papapanagiotou, A. Liakos, A. Tsapas, and A. Delopoulos. In: Clinical Nutrition Open Science 58 (2024), pp. 163–174. 

Listen2YourHeart: A Self-Supervised Approach for Detecting Murmur in Heart-Beat Sounds
A. Ballas, V. Papapanagiotou, A. Delopoulos, and C. Diou. In: 2022 Computing in Cardiology (CinC). Vol. 498. 2022, pp. 1–4. 

Selected publications from Federico Pietrocola

Autophagy in major human diseases.
Klionsky DJ, Petroni G, Amaravadi RK, Baehrecke EH, Ballabio A, Boya P, Bravo-San Pedro JM, Cadwell K, Cecconi F, Choi AMK, Choi ME, Chu CT, Codogno P, Colombo MI, Cuervo AM, Deretic V, Dikic I, Elazar Z, Eskelinen EL, Fimia GM, Gewirtz DA, Green DR, Hansen M, Jäättelä M, Johansen T, Juhász G, Karantza V, Kraft C, Kroemer G, Ktistakis NT, Kumar S, Lopez-Otin C, Macleod KF, Madeo F, Martinez J, Meléndez A, Mizushima N, Münz C, Penninger JM, Perera RM, Piacentini M, Reggiori F, Rubinsztein DC, Ryan KM, Sadoshima J, Santambrogio L, Scorrano L, Simon HU, Simon AK, Simonsen A, Stolz A, Tavernarakis N, Tooze SA, Yoshimori T, Yuan J, Yue Z, Zhong Q, Galluzzi L, Pietrocola F
EMBO J 2021 10;40(19):e108863

Chemical activation of SAT1 corrects diet-induced metabolic syndrome.
Castoldi F, Hyvönen MT, Durand S, Aprahamian F, Sauvat A, Malik SA, Baracco EE, Vacchelli E, Opolon P, Signolle N, Lefevre D, Bossut N, Eisenberg T, Dammbrueck C, Pendl T, Kremer M, Lachkar S, Einer C, Michalke B, Zischka H, Madeo F, Keinänen TA, Maiuri MC, Pietrocola F, Kroemer G
Cell Death Differ 2020 10;27(10):2904-2920

Spermidine in health and disease.
Madeo F, Eisenberg T, Pietrocola F, Kroemer G
Science 2018 Jan;359(6374):

Nutrition, inflammation and cancer.
Zitvogel L, Pietrocola F, Kroemer G.
Nat Immunol. 2017 Jul 19;18(8):843-850

Caloric Restriction Mimetics Enhance Anticancer Immunosurveillance.
Pietrocola F, Pol J, Vacchelli E, Rao S, Enot DP, Baracco EE, Levesque S, Castoldi F, Jacquelot N, Yamazaki T, Senovilla L, Marino G, Aranda F, Durand S, Sica V, Chery A, Lachkar S, Sigl V, Bloy N, Buque A, Falzoni S, Ryffel B, Apetoh L, Di Virgilio F, Madeo F, Maiuri MC, Zitvogel L, Levine B, Penninger JM, Kroemer G
Cancer Cell 2016 07;30(1):147-160

Selected publications from Eckardt Treuter

Antagonistic action of GPS2 and KDM1A at enhancers governs alternative macrophage activation by interleukin 4.
Huang Z, Efthymiadou A, Liang N, Fan R, Treuter E
Nucleic Acids Res 2023 Jan 5;gkac1230.

The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages.
Huang Z, Liang N, Goñi S, Damdimopoulos A, Wang C, Ballaire R, Jager J, Niskanen H, Han H, Jakobsson T, Bracken AP, Aouadi M, Venteclef N, Kaikkonen MU, Fan R, Treuter E
Mol Cell 2021 Mar;81(5):953-968.e9

Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1.
Barilla S, Liang N, Mileti E, Ballaire R, Lhomme M, Ponnaiah M, Lemoine S, Soprani A, Gautier JF, Amri EZ, Le Goff W, Venteclef N, Treuter E
Mol Metab 2020 Dec;42():101066

G protein pathway suppressor 2 (GPS2) links inflammation and cholesterol efflux by controlling lipopolysaccharide-induced ATP-binding cassette transporter A1 expression in macrophages.
Huang Z, Liang N, Damdimopoulos A, Fan R, Treuter E
FASEB J 2019 Feb;33(2):1631-1643

Loss of the co-repressor GPS2 sensitizes macrophage activation upon metabolic stress induced by obesity and type 2 diabetes.
Fan R, Toubal A, Goñi S, Drareni K, Huang Z, Alzaid F, Ballaire R, Ancel P, Liang N, Damdimopoulos A, Hainault I, Soprani A, Aron-Wisnewsky J, Foufelle F, Lawrence T, Gautier JF, Venteclef N, Treuter E
Nat Med 2016 Jul;22(7):780-91