Reza Mirzazadeh

Publikationer
Forskningsbidrag
CV
Populärvetenskap och samverkan

Artiklar

Article: NATURE BIOTECHNOLOGY. 2024;42(7):1046-1050
Spatial multimodal analysis of transcriptomes and metabolomes in tissues
Vicari M; Mirzazadeh R; Nilsson A; Shariatgorji R; Bjaerterot P; Larsson L; Lee H; Nilsson M; Foyer J; Ekvall M; Czarnewski P; Zhang X; Svenningsson P; Kaell L; Andren PE; Lundeberg J
Journal article: JOURNAL OF INVESTIGATIVE DERMATOLOGY. 2023;143(11):2177-2192.e13
Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells
Thrane K; Winge MCG; Wang H; Chen L; Guo MG; Andersson A; Abalo XM; Yang X; Kim DS; Longo SK; Soong BY; Meyers JM; Reynolds DL; McGeever A; Demircioglu D; Hasson D; Mirzazadeh R; Rubin AJ; Bae GH; Karkanias J; Rieger K; Lundeberg J; Ji AL
Journal article: CANCER RESEARCH. 2023;83(11):a051
The spatial landscape of clonal somatic copy number alterations in benign and malignant prostate epithelia
Erickson A; He M; Berglund E; Marklund M; Mirzazadeh R; Schultz N; Kvastad L; Andersson A; Bergenstrahle L; Bergenstrahle J; Larsson L; Galicia LA; Shamikh A; Basmaci E; De Stahl TD; Rajakumar T; Doultsinos D; Thrane K; Ji AL; Khavari PA; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock DJ; Helleday T; Mills IG; Lamb AD; Lundeberg J
Article: NATURE CELL BIOLOGY. 2023;25(2):351-365
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung
Sountoulidis A; Marco Salas S; Braun E; Avenel C; Bergenstrahle J; Theelke J; Vicari M; Czarnewski P; Liontos A; Abalo X; Andrusivova Z; Mirzazadeh R; Asp M; Li X; Hu L; Sariyar S; Martinez Casals A; Ayoglu B; Firsova A; Michaelsson J; Lundberg E; Waehlby C; Sundstroem E; Linnarsson S; Lundeberg J; Nilsson M; Samakovlis C
Article: NATURE COMMUNICATIONS. 2023;14(1):509
Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples
Mirzazadeh R; Andrusivova Z; Larsson L; Newton PT; Galicia LA; Abalo XM; Avijgan M; Kvastad L; Denadai-Souza A; Stakenborg N; Firsova AB; Shamikh A; Jurek A; Schultz N; Nister M; Samakovlis C; Boeckxstaens G; Lundeberg J
Article: NATURE. 2022;608(7922):360-367
Spatially resolved clonal copy number alterations in benign and malignant tissue
Erickson A; He M; Berglund E; Marklund M; Mirzazadeh R; Schultz N; Kvastad L; Andersson A; Bergenstrahle L; Bergenstrahle J; Larsson L; Galicia LA; Shamikh A; Basmaci E; De Stahl TD; Rajakumar T; Doultsinos D; Thrane K; Ji AL; Khavari PA; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock DJ; Helleday T; Mills IG; Lamb AD; Lundeberg J
Journal article: CANCER RESEARCH. 2022;82(12_Supplement):2171
Abstract 2171: The spatial landscape of clonal somatic mutations in benign and malignant tissue
Erickson A; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Kvastad L; Andersson A; Bergenstråhle L; Bergenstråhle J; Larsson L; Shamikh A; Basmaci E; De Ståhl TD; Rajakumar T; Thrane K; Ji AL; Khavari PA; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy F; Woodcock DJ; Helleday T; Mills IG; Lamb AD; Lundenberg J
Journal article: INVESTIGATIVE UROLOGY. 2022;207(Supplement 5):e768
MP45-14 THE SPATIAL LANDSCAPE OF CLONAL SOMATIC MUTATIONS IN BENIGN AND MALIGNANT PROSTATE EPITHELIA
Erickson A; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Bergenstråhle L; Kvastad L; Andersson A; Bergenstråhle J; Larsson L; Shamikh A; Basmaci E; De Ståhl TD; Rajakumar T; Thrane K; Ji A; Khavari P; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock D; Helleday T; Mills I; Lamb A; Lundeberg J
Journal article: NATURE BIOTECHNOLOGY. 2022;40(4):476-479
Super-resolved spatial transcriptomics by deep data fusion
Bergenstrahle L; He B; Bergenstrahle J; Abalo X; Mirzazadeh R; Thrane K; Ji AL; Andersson A; Larsson L; Stakenborg N; Boeckxstaens G; Khavari P; Zou J; Lundeberg J; Maaskola J
Journal article: EUROPEAN UROLOGY. 2022;81:s725-s726
A0480 The spatial landscape of clonal somatic mutations in benign and malignant prostate epithelia
Erickson AM; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Bergenstråhle L; Kvastad L; Andersson A; Bergenstråhle J; Larsson L; Rajakumar T; Thrane K; Ji AL; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock DJ; Helleday T; Mills IG; Lamb A; Lundenberg J
Article: CELL GENOMICS. 2021;1(3):100065
Genome-wide spatial expression profiling in formalin-fixed tissues
Villacampa EG; Larsson L; Mirzazadeh R; Kvastad L; Andersson A; Mollbrink A; Kokaraki G; Monteil V; Schultz N; Appelberg KS; Montserrat N; Zhang H; Penninger JM; Miesbach W; Mirazimi A; Carlson J; Lundeberg J
Article: MOLECULAR CELL. 2021;81(23):4907-4923.e8
A recurrent chromosomal inversion suffices for driving escape from oncogene-induced senescence via subTAD reorganization
Zampetidis CP; Galanos P; Angelopoulou A; Zhu Y; Polyzou A; Karamitros T; Kotsinas A; Lagopati N; Mourkioti I; Mirzazadeh R; Polyzos A; Garnerone S; Mizi A; Gusmao EG; Sofiadis K; Gal Z; Larsen DH; Pefani D-E; Demaria M; Tsirigos A; Crosetto N; Maya-Mendoza A; Papaspyropoulos A; Evangelou K; Bartek J; Papantonis A; Gorgoulis VG
Article: NATURE COMMUNICATIONS. 2019;10(1):4732
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples
Zhang X; Garnerone S; Simonetti M; Harbers L; Nicos M; Mirzazadeh R; Venesio T; Sapino A; Hartman J; Marchio C; Bienko M; Crosetto N
Article: NATURE COMMUNICATIONS. 2019;10(1):1636
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture
Gelali E; Girelli G; Matsumoto M; Wernersson E; Custodio J; Mota A; Schweitzer M; Ferenc K; Li X; Mirzazadeh R; Agostini F; Schell JP; Lanner F; Crosetto N; Bienko M
Article: JOURNAL OF EXPERIMENTAL BIOLOGY. 2019;222(5):jeb194431
In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation
Wu C-C; Klaesson A; Buskas J; Ranefall P; Mirzazadeh R; Soderberg O; Wolf JBW
Article: GENOME BIOLOGY. 2019;20(1):28
Modeling double strand break susceptibility to interrogate structural variation in cancer
Ballinger TJ; Bouwman BAM; Mirzazadeh R; Garnerone S; Crosetto N; Semple CA
Journal article: PROTOCOL EXCHANGE. 2019
iFISH:a publically available resource enabling versatile DNA FISH to study genome architecture
Crosetto N; Bienko M; Gelali E; Girelli G; Matsumoto M; Wernersson E; Custodio J; Mota A; Schweitzer M; Ferenc K; Li X; Mirzazadeh R; Agostini F; Schell JP; Lanner F
Article: COMMUNICATIONS BIOLOGY. 2018;1:209
RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples
Wu C; Simonetti M; Rossell C; Mignardi M; Mirzazadeh R; Annaratone L; Marchio C; Sapino A; Bienko M; Crosetto N; Nilsson M
Article: METHODS IN MOLECULAR BIOLOGY. 2018;1672:167-194
Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods.
Mirzazadeh R; Kallas T; Bienko M; Crosetto N
Journal article: PROTOCOL EXCHANGE. 2017
Breaks Labeling in situ and sequencing (BLISS)
Mirzazadeh R; Yan WX; Mirzazadeh R; Garnerone S; Scott D; Schneider MW; Kallas T; Custodio J; Wernersson E; Li Y; Gao L; Federova Y; Zetsche B; Zhang F; Bienko M; Crosetto N
Article: NATURE COMMUNICATIONS. 2017;8:15058
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks
Yan WX; Mirzazadeh R; Garnerone S; Scott D; Schneider MW; Kallas T; Custodio J; Wernersson E; Li Y; Gao L; Federova Y; Zetsche B; Zhang F; Bienko M; Crosetto N
Article: BIOLOGY OF SEX DIFFERENCES. 2016;7:5
Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development.
Johansson MM; Lundin E; Qian X; Mirzazadeh M; Halvardson J; Darj E; Feuk L; Nilsson M; Jazin E
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Alla övriga publikationer

Preprint: BIORXIV. 2025
Human growth plates house resting zone sub-populations with features of quiescent stem cells
Avijgan M; Perez ARL; Galicia LA; Sudupe L; Marchan-Alvarez JG; Nazaraliyev A; Andrusivová Ž; Larsson L; Zhao Y; Zaman F; Qian H; Blomgren K; Prosper F; Tegner JN; Lundeberg J; Sävendahl L; Mirzazadeh R; Gomez-Cabrero D; Newton PT
Preprint: BIORXIV. 2023
Spatial Multimodal Analysis of Transcriptomes and Metabolomes in Tissues
Vicari M; Mirzazadeh R; Nilsson A; Shariatgorji R; Bjärterot P; Larsson L; Lee H; Nilsson M; Foyer J; Ekvall M; Czarnewski P; Zhang X; Svenningsson P; Andrén P; Lundeberg J
Preprint: BIORXIV. 2022
Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples
Mirzazadeh R; Andrusivova Z; Larsson L; Newton PT; Galicia LA; Abalo XM; Avijgan M; Kvastad L; Denadai-Souza A; Stakenborg N; Firsova AB; Shamikh A; Jurek A; Schultz N; Nistér M; Samakovlis C; Boeckxstaens G; Lundeberg J
Meeting abstract: CANCER RESEARCH. 2022;82(10):pr016
The spatial landscape of clonal somatic mutations in benign and malignant tissue
Erickson A; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Bergenstrahle L; Kvastad L; Andersson A; Bergenstrahle J; Larsson L; Shamikh A; Basmaci E; De Stahl TD; Rajakumar T; Thrane K; Ji AL; Khavari PA; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock DJ; Helleday T; Mills IG; Lamb AD
Conference publication: JOURNAL OF UROLOGY. 2022;207(5):E768
THE SPATIAL LANDSCAPE OF CLONAL SOMATIC MUTATIONS IN BENIGN AND MALIGNANT PROSTATE EPITHELIA
Erickson A; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Bergenstrahle L; Kvastad L; Andersson A; Bergenstrahle J; Larsson L; Shamikh A; Basmaci E; De Stahl TD; Rajakumar T; Thrane K; Ji A; Khavari P; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock D; Helleday T; Mills I; Lamb A; Lundeberg J
Conference publication: CANCER RESEARCH. 2022;82(12)
The spatial landscape of clonal somatic mutations in benign and malignant tissue
Erickson A; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Kvastad L; Andersson A; Bergenstrahle L; Bergenstrahle J; Larsson L; Shamikh A; Basmaci E; De Stahl TD; Rajakumar T; Thrane K; Ji AL; Khavari PA; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy F; Woodcock DJ; Helleday T; Mills IG; Lamb AD; Lundenberg J
Conference publication: EUROPEAN UROLOGY. 2022;81:S725-S726
The spatial landscape of clonal somatic mutations in benign and malignant prostate epithelia
Erickson AM; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Bergenstrahle L; Kvastad L; Andersson A; Bergenstrahle J; Larsson L; Rajakumar T; Thrane K; Ji AL; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock DJ; Helleday T; Mills IG; Lamb A; Lundenberg J
Preprint: RESEARCH SQUARE. 2021
The spatial landscape of clonal somatic mutations in benign and malignant tissue
Lundeberg J; Erickson A; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Kvastad L; Andersson A; Bergenstråhle L; Bergenstråhle J; Larsson L; Shamikh A; Basmaci E; de Ståhl TD; Rajakumar T; Thrane K; Ji A; Khavari P; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy F; Woodcock D; Helleday T; Mills I; Lamb A
Preprint: BIORXIV. 2021
The spatial landscape of clonal somatic mutations in benign and malignant tissue
Erickson A; Berglund E; He M; Marklund M; Mirzazadeh R; Schultz N; Bergenstråhle L; Kvastad L; Andersson A; Bergenstråhle J; Larsson L; Shamikh A; Basmaci E; De Ståhl TD; Rajakumar T; Thrane K; Ji AL; Khavari PA; Tarish F; Tanoglidi A; Maaskola J; Colling R; Mirtti T; Hamdy FC; Woodcock DJ; Helleday T; Mills IG; Lamb AD; Lundeberg J
Preprint: BIORXIV. 2020
Genomic instability is an early event driving chromatin reorganization and escape from oncogene-induced senescence
Zampetidis C; Galanos P; Angelopoulou A; Zhu Y; Karamitros T; Polyzou A; Mourkioti I; Lagopati N; Mirzazadeh R; Polyzos A; Garnerone S; Gusmao E; Sofiadis K; Pefani D; Demaria M; Crosetto N; Maya-Mendoza A; Evangelou K; Bartek J; Papantonis A; Gorgoulis V
Doctoral thesis: 2019
Novel methods to study genomic fragility and structural variation
Mirzazadeh R
Preprint: RESEARCH SQUARE. 2019
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples
Zhang X; Garnerone S; Simonetti M; Harbers L; Nicoś M; Mirzazadeh R; Venesio T; Sapino A; Hartman J; Marchiò C; Bienko M; Crosetto N
Preprint: RESEARCH SQUARE. 2019
Breaks Labeling in situ and sequencing (BLISS)
Yan WX; Mirzazadeh R; Garnerone S; Scott D; Schneider MW; Kallas T; Custodio J; Li Y; Gao L; Federova Y; Wernersson E; Zetsche B; Zhang F; Bienko M; Crosetto N
Preprint: RESEARCH SQUARE. 2019
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples
Zhang X; Garnerone S; Simonetti M; Harbers L; Nicoś M; Mirzazadeh R; Venesio T; Sapino A; Hartman J; Marchiò C; Bienko M; Crosetto N
Preprint: RESEARCH SQUARE. 2019
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples
Zhang X; Garnerone S; Simonetti M; Nicoś M; Harbers L; Marchiò C; Mirzazadeh R; Venesio T; Sapino A; Hartman J; Bienko M; Crosetto N
Preprint: BIORXIV. 2018
Modelling double strand break susceptibility to interrogate structural variation in cancer
Ballinger T; Bouwman B; Mirzazadeh R; Garnerone S; Crosetto N; Semple C
Preprint: BIORXIV. 2018
In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation
Wu C-C; Klaesson A; Buskas J; Ranefall P; Mirzazadeh R; Söderberg O; Wolf JBW
Preprint: BIORXIV. 2016
BLISS: quantitative and versatile genome-wide profiling of DNA breaks in situ
Yan WX; Mirzazadeh R; Garnerone S; Scott D; Schneider MW; Kallas T; Custodio J; Wernersson E; Gao L; Li Y; Federova Y; Zetsche B; Zhang F; Bienko M; Crosetto N

Forskningsbidrag

A Comprehensive Molecular Map of Human Ovaries Across Life Stages for the Development of Novel Fertility and Ovarian Reserve Markers
Swedish Research Council
1 January 2025 - 31 December 2028

Anställningar

Anknuten till Forskning, Kvinnors och barns hälsa, Karolinska Institutet, 2025-2028

Examina och utbildning

Medicine Doktorsexamen, Institutionen för medicinsk biokemi och biofysik, Karolinska Institutet, 2021

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Nyheter från KI

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