Algoritmisk dynamik - avkoda och omprogrammera livet – Narsis Kianis team

Publikationer

Alla gruppmedlemmars publikationer

• Article: MULTIPLE SCLEROSIS JOURNAL. 2026;32(9):915-926

  A susceptibility network analysis of disease trajectories leading to multiple sclerosis: A nationwide cohort study

  Ebrahimi A; Wiil UK; Olsson T; Lio P; Kockum I; Manouchehrinia A; Kiani NA
• Article: BREAST. 2026;88:104835

  Case-mix-adjusted benchmarking of long-term breast cancer-specific mortality: Insights from a nationwide Swedish registry

  Thurell J; Petrov I; Lindgren P; Bergh J; Fredriksson I; Kiani NA; Hedayati E
• Article: JOURNAL OF CHEMINFORMATICS. 2026;18(1):101

  LEP-AD: language embedding of proteins and attention to drugs predicts drug-target interactions

  Alsulami R; Lehmann R; Daga A; Khan SA; Grunberg R; Abogosh A; Cabrero DG; Arold ST; Hoehndorf R; Tegner J; Kiani NA
• Article: BREAST CANCER RESEARCH AND TREATMENT. 2026;217(2):14

  External validation of PREDICT Breast v3.1 for overall survival in international cohorts, including young and invasive lobular subgroups

  Verheul EM; Doornkamp F; Petrov I; Siesling S; Lingsma HF; Koppert LB; Vreven LWA; Voogd AC; Karsten MM; Doppelbauer L; Gebert P; Kiani N; Borstnar S; Pharoah PDP; Hedayati E; Steyerberg EW; van Klaveren D
• Article: NATURE MACHINE INTELLIGENCE. 2026;8(3):461-473

  Predicting and interpreting cell-type-specific drug responses in the small-data regime using inductive priors

  Alsulami R; Lehmann R; Khan SA; Lagani V; Maillo A; Gomez-Cabrero D; Kiani NA; Tegner J
• Article: AVICENNA JOURNAL OF PHYTOMEDICINE. 2026;16(1):184-194

  The effect of training and Tribulus terrestris extract on the antioxidant system and telomere functional markers in the liver tissue of rats exposed to stanozolol.

  Kiani N; Keshavarz S; Hosseini SA; Banai J
• Article: NATURE COMMUNICATIONS. 2025;16(1):11495

  Leveraging network motifs to improve artificial neural networks

  Zhang H; Yang C-HH; Zenil H; Chen P-Y; Shen Y; Kiani NA; Tegner JN
• Article: INFORMATION SCIENCES. 2025;720:122520

  Minimal algorithmic information loss methods for dimension reduction, feature selection and network sparsification

  Zenil H; Kiani NA; Adams A; Abrahao FS; Rueda-Toicen A; Zea AA; Ozelim L; Tegner J
• Preprint: ARXIV. 2025

  Assembly Theory Reduced to Shannon Entropy and Rendered Redundant by Naive Statistical Algorithms

  Ozelim L; Uthamacumaran A; Abrahão FS; Hernández-Orozco S; Kiani NA; Tegnér J; Zenil H
• Article: CARDIO-ONCOLOGY. 2025;11(1):92

  Timing and combinations of cardiovascular diseases in survivors of childhood, adolescent, and young adulthood cancer

  Sodling J; Hytting J; Mallios P; Bollano E; Johansson M; Rodriguez-Wallberg KA; Hedayati E; Karlstrom P; Sundbom P; Kiani N; Keskisarkka R; Singull M; Hubbert L
• Article: SCIENCE ADVANCES. 2025;11(41):eadw3110

  Uncovering the regulatory landscape of early human B cell lymphopoiesis and its implications in the pathogenesis of B-ALL

  Planell N; Martinez-de-Morentin X; Mouzo D; Lara-Astiaso D; Vilas-Zornoza A; Martin-Uriz PS; Alignani D; Paiva B; Maillo A; Kurowska A; Berastegui N; Garcia-Olloqui P; Urdangarin A; Noori P; Ortega-Legarreta A; Hernaez M; Lagani V; Kiani N; Merkenschlager M; Ezponda T; Martin-Subero JI; Ramirez RN; Tegner J; Prosper F; Gomez-Cabrero D
• Preprint: BIORXIV. 2025

  Fundamental Limits of Inferring Dynamical Gene Regulatory Models from Single-Cell Data

  Balubaid A; Tamyo JPB; Kumar R; Agboola H; Cabrero DG; Kiani N; Tegner J
• Review: ESMO REAL WORLD DATA AND DIGITAL ONCOLOGY. 2025;9:100176

  Benchmarking cancer outcomes in Europe: a scoping review of methodologies and case-mix adjustments

  Thurell J; Doppelbauer L; Verheul EM; Petrov I; Karsten MM; Koppert LB; Bergh J; Fredriksson I; Lindgren P; Kiani N; Hedayati E
• Preprint: ARXIV. 2025

  Minimal Algorithmic Information Loss Methods for Dimension Reduction, Feature Selection and Network Sparsification

  Zenil H; Kiani NA; Adams A; Abrahão FS; Rueda-Toicen A; Zea AA; Ozelim L; Tegnér J
• Journal article: JOURNAL OF HEPATOLOGY. 2025;82:s54-s55

  OS-077 Single-cell RNA sequencing of peripheral blood mononuclear cells in patients with acutely decompensated cirrhosis reveals a specific monocyte subset associated with an increased risk of progression to ACLF

  Wirtz TH; Palomino S; Pollmanns MR; Huergo E; Schreibing F; Reißing J; Sanchez C; López-Vicario C; Aransay AM; Baldassarre M; Zaccherini G; Pompili E; Schulz M; Uschner FE; Klein S; Gu W; Schierwagen R; Valainathan S; Verbeeck A; Campion D; Giovo I; Koch A; Kramann R; Bruns T; Kiani N; Caraceni P; Alessandria C; Moreau R; Trebicka J; Clària J; Planell N; Rautou P-E; Trautwein C; Gómez-Cabrero D
• Journal article: ESMO OPEN. 2025;10:105009

  437P Benchmarking breast cancer survival: A case-mix model for fair hospital comparisons of 5 and 10-year breast cancer-specific mortality

  Thurell J; Petrov I; Lindgren P; Bergh J; Fredriksson I; Kiani N; Hedayati E
• Conference publication: JOURNAL OF HEPATOLOGY. 2025;82

  Single-cell RNA sequencing of peripheral blood mononuclear cells in patients with acutely decompensated cirrhosis reveals a specific monocyte subset associated with an increased risk of progression to ACLF

  Wirtz TH; Palomino S; Pollmanns MR; Huergo E; Schreibing F; Reissing J; Sanchez C; Lopez-Vicario C; Aransay AM; Baldassarre M; Zaccherini G; Pompili E; Schulz M; Uschner FE; Klein S; Gu W; Schierwagen R; Valainathan S; Verbeeck A; Campion D; Giovo I; Koch A; Kramann R; Bruns T; Kiani N; Caraceni P; Alessandria C; Moreau R; Trebicka J; Claria J; Planell N; Rautou P-E; Trautwein C; Gomez-Cabrero D
• Preprint: MEDRXIV. 2025

  Single-cell profiling reveals monocyte mitochondrial dysfunction in patients with cirrhosis progressing to acute-on-chronic liver failure

  Wirtz TH; Palomino-Echeverria S; Pollmanns MR; Huergo E; Schreibing F; Reißing J; Sánchez-Garrido C; López-Vicario C; Aransay AM; Baldassare M; Zaccherini G; Pompili E; Schulz M; Uschner FE; Klein S; Gu W; Schierwagen R; Valainathan S; Verbeeck A; Campion D; Giovo I; Schneider KM; Koch A; Kramann R; Bruns T; Kiani N; Stiles L; Caraceni P; Alessandria C; Moreau R; Trebicka J; Clària J; Planell N; Rautou P-E; Trautwein C; Gomez-Cabrero D
• Article: CARDIO-ONCOLOGY. 2025;11(1):5

  Cardiovascular health in breast cancer patients: insight on BRCA1/2 mutations impact

  Mallios P; Manshadi MD; Hubbert L; Aydin T; Maes C; Rantala J; Liljegren A; Kiani NA; Hedayati E
• Article: PLOS COMPUTATIONAL BIOLOGY. 2024;20(12):e1012656

  ClustAll: An R package for patient stratification in complex diseases

  Ortega-Legarreta A; Palomino-Echeverria S; Huergo E; Lagani V; Kiani NA; Rautou P-E; Picola NP; Tegner J; Gomez-Cabrero D
• Visa fler

Finansiering

Medarbetare och kontakt

Gruppledare

• 

  Narsis Aftab Kiani

  Senior Forskningsspecialist

  E-postadress narsis.kiani@ki.se

Alla medarbetare i gruppen

• 

  Mehdi Dehghan Manshadi

  Postdoktor

  E-postadress mehdi.dehghan.manshadi@ki.se
• Sneha Karthikeyan

  Anknuten till Forskning

  E-postadress sneha.karthikeyan@ki.se
• Narges Manouchehri

  Postdoktorala Studier

  E-postadress narges.manouchehri@ki.se