Daniel Ramsköld

Publikationer
CV
Populärvetenskap och samverkan

Artiklar

Article: ISCIENCE. 2024;27(4):109346
Inflammatory, metabolic, and sex-dependent gene-regulatory dynamics of microglia and macrophages in neonatal hippocampus after hypoxia-ischemia
Di Martino E; Ambikan A; Ramskold D; Umekawa T; Giatrellis S; Vacondio D; Romero AL; Galan MG; Sandberg R; Aden U; Lauschke VM; Neogi U; Blomgren K; Kele J
Article: EMBO MOLECULAR MEDICINE. 2023;15(10):e17240
Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies
Argyriou A; Horuluoglu B; Galindo-Feria AS; Diaz-Boada JS; Sijbranda M; Notarnicola A; Dani L; van Vollenhoven A; Ramskold D; Nennesmo I; Dastmalchi M; Lundberg IE; Diaz-Gallo L-M; Chemin K
Article: ANNALS OF THE RHEUMATIC DISEASES. 2022;81(8):1151-1161
Auxilin is a novel susceptibility gene for congenital heart block which directly impacts fetal heart function
Meisgen S; Hedlund M; Ambrosi A; Folkersen L; Ottosson V; Forsberg D; Thorlacius GE; Biavati L; Strandberg L; Mofors J; Ramskold D; Ruhrmann S; Meneghel L; Nyberg W; Espinosa A; Hamilton RM; Franco-Cereceda A; Hamsten A; Olsson T; Greene L; Eriksson P; Gemzell-Danielsson K; Salomonsson S; Kuchroo VK; Herlenius E; Kockum I; Sonesson S-E; Wahren-Herlenius M
Article: PLOS ONE. 2021;16(4):e0250282
Understanding interactions between risk factors, and assessing the utility of the additive and multiplicative models through simulations
Diaz-Gallo L-M; Brynedal B; Westerlind H; Sandberg R; Ramskold D
Article: NATURE BIOTECHNOLOGY. 2020;38(6):708-714
Single-cell RNA counting at allele and isoform resolution using Smart-seq3
Hagemann-Jensen M; Ziegenhain C; Chen P; Ramskold D; Hendriks G-J; Larsson AJM; Faridani OR; Sandberg R
Article: ARTERIOSCLEROSIS, THROMBOSIS, AND VASCULAR BIOLOGY. 2019;39(7):1402-1418
Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization
Ali Z; Mukwaya A; Biesemeier A; Ntzouni M; Ramskold D; Giatrellis S; Mammadzada P; Cao R; Lennikov A; Marass M; Gerri C; Hildesjo C; Taylor M; Deng Q; Peebo B; del Peso L; Kvanta A; Sandberg R; Schraermeyer U; Andre H; Steffensen JF; Lagali N; Cao Y; Kele J; Dahl Jensen L
Article: ARTERIOSCLEROSIS, THROMBOSIS, AND VASCULAR BIOLOGY. 2019;39(7):1432-1447
Disruption of the Extracellular Matrix Progressively Impairs Central Nervous System Vascular Maturation Downstream of β-Catenin Signaling
Jensen LD; Hot B; Ramskold D; Germano RFV; Yokota C; Giatrellis S; Lauschke VM; Hubmacher D; Li MX; Hupe M; Arnold TD; Sandberg R; Frisen J; Trusohamn M; Martowicz A; Wisniewska-Kruk J; Nyqvist D; Adams RH; Apte SS; Vanhollebeke B; Stenman JM; Kele J
Article: EBIOMEDICINE. 2019;40:517-527
B cell alterations during BAFF inhibition with belimumab in SLE
Ramskold D; Parodis I; Lakshmikanth T; Sippl N; Khademi M; Chen Y; Zickert A; Mikes J; Achour A; Amara K; Piehl F; Brodin P; Gunnarsson I; Malmstrom V
Article: ARTHRITIS & RHEUMATOLOGY. 2019;71(2):196-209
Recognition of Amino Acid Motifs, Rather Than Specific Proteins, by Human Plasma Cell-Derived Monoclonal Antibodies to Posttranslationally Modified Proteins in Rheumatoid Arthritis
Steen J; Forsstroem B; Sahlstroem P; Odowd V; Israelsson L; Krishnamurthy A; Badreh S; Alm LM; Compson J; Ramskold D; Ndlovu W; Rapecki S; Hansson M; Titcombe PJ; Bang H; Mueller DL; Catrina AI; Gronwall C; Skriner K; Nilsson P; Lightwood D; Klareskog L; Malmstrom V
Article: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2019;89(1):e12732
Effect of CTLA4-Ig (abatacept) treatment on T cells and B cells in peripheral blood of patients with polymyositis and dermatomyositis
Tang Q; Ramskold D; Krystufkova O; Mann HF; Wick C; Dastmalchi M; Lakshmikanth T; Chen Y; Mikes J; Alexanderson H; Achour A; Brodin P; Vencovsky J; Lundberg IE; Malmstrom V
Article: ANNALS OF THE RHEUMATIC DISEASES. 2018;77(10):1454-1462
Systematic approach demonstrates enrichment of multiple interactions between non-HLA risk variants and HLA-DRB1 risk alleles in rheumatoid arthritis
Diaz-Gallo L-M; Ramskold D; Shchetynsky K; Folkersen L; Chemin K; Brynedal B; Uebe S; Okada Y; Alfredsson L; Klareskog L; Padyukov L
Article: JOURNAL OF AUTOIMMUNITY. 2018;90:28-38
T cells are influenced by a long non-coding RNA in the autoimmune associated PTPN2 locus
Houtman M; Shchetynsky K; Chemin K; Hensvold AH; Ramskold D; Tandre K; Eloranta M-L; Ronnblom L; Uebe S; Catrina AI; Malmstrom V; Padyukov L
Article: EUROPEAN JOURNAL OF IMMUNOLOGY. 2018;48(4):655-669
EOMES-positive CD4⁺ Tcells are increased in PTPN22 (1858T) risk allele carriers
Chemin K; Ramskold D; Diaz-Gallo L-M; Herrath J; Houtman M; Tandre K; Ronnblom L; Catrina A; Malmstrom V
Article: GASTROENTEROLOGY. 2018;154(4):1080-1095
Mouse Model of Alagille Syndrome and Mechanisms of Jagged1 Missense Mutations
Andersson ER; Chivukula IV; Hankeova S; Sjoqvist M; Tsoi YL; Ramskold D; Masek J; Elmansuri A; Hoogendoorn A; Vazquez E; Storvall H; Netusilova J; Huch M; Fischler B; Ellis E; Contreras A; Nemeth A; Chien KC; Clevers H; Sandberg R; Bryja V; Lendahl U
Article: DATA IN BRIEF. 2017;13:356-370
Immunoglobulin characteristics and RNAseq data of FcRL4+ B cells sorted from synovial fluid and tissue of patients with rheumatoid arthritis.
Amara K; Clay E; Yeo L; Ramsköld D; Spengler J; Sippl N; Cameron J; Israelsson L; Titcombe PJ; Grönwall C; Sahbudin I; Filer A; Raza K; Malmström V; Scheel-Toellner D
Article: JOURNAL OF AUTOIMMUNITY. 2017;81:34-43
B cells expressing the IgA receptor FcRL4 participate in the autoimmune response in patients with rheumatoid arthritis
Amara K; Clay E; Yeo L; Ramskold D; Spengler J; Sippl N; Cameron JA; Israelsson L; Titcombe PJ; Gronwall C; Sahbudin I; Filer A; Raza K; Malmstrom V; Scheel-Toeliner D
Article: NATURE GENETICS. 2016;48(11):1430-1435
Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq
Reinius B; Mold JE; Ramskold D; Deng Q; Johnsson P; Michaelsson J; Frisen J; Sandberg R
Article: MOLECULAR MEDICINE. 2016;22:322-328
Integration of Known DNA, RNA and Protein Biomarkers Provides Prediction of Anti-TNF Response in Rheumatoid Arthritis: Results from the COMBINE Study
Folkersen L; Brynedal B; Diaz-Gallo LM; Ramskold D; Shchetynsky K; Westerlind H; Sundstrom Y; Schepis D; Hensvold A; Vivar N; Eloranta M-L; Ronnblom L; Brunak S; Malmstrom V; Catrina A; Moerch UGW; Klareskog L; Padyukov L; Berg L
Article: STEM CELL REPORTS. 2016;6(5):643-651
Loss of CSL Unlocks a Hypoxic Response and Enhanced Tumor Growth Potential in Breast Cancer Cells
Braune E-B; Tsoi YL; Phoon YP; Landor S; Cascales HS; Ramskold D; Deng Q; Lindqvist A; Lian X; Sahlgren C; Jin S-B; Lendahl U
Article: BREAST CANCER RESEARCH. 2015;17(1):109
Decoding breast cancer tissue-stroma interactions using species-specific sequencing
Chivukula IV; Ramskold D; Storvall H; Anderberg C; Jin S; Mamaeva V; Sahlgren C; Pietras K; Sandberg R; Lendahl U
Article: GENOME BIOLOGY. 2015;16(1):156
Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution
Sahlen P; Abdullayev I; Ramskold D; Matskova L; Rilakovic N; Lotstedt B; Albert TJ; Lundeberg J; Sandberg R
Article: CELL STEM CELL. 2014;15(5):619-633
BMP Signaling and Its pSMAD1/5 Target Genes Differentially Regulate Hair Follicle Stem Cell Lineages
Genander M; Cook PJ; Ramskold D; Keyes BE; Mertz AF; Sandberg R; Fuchs E
Article: CANCER DISCOVERY. 2014;4(4):434-451
RNA Helicase A Is a Downstream Mediator of KIF1Bβ Tumor-Suppressor Function in Neuroblastoma
Chen ZX; Wallis K; Fell SM; Sobrado VR; Hemmer MC; Ramskold D; Hellman U; Sandberg R; Kenchappa RS; Martinson T; Johnsen JI; Kogner P; Schlisio S
Article: SCIENCE. 2014;343(6167):193-196
Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
Deng Q; Ramskold D; Reinius B; Sandberg R
Article: ONCOGENE. 2013;32(41):4892-4902
Non-canonical Notch signaling activates IL-6/JAK/STAT signaling in breast tumor cells and is controlled by p53 and IKKα/IKKb
Jin S; Mutvei AP; Chivukula IV; Andersson ER; Ramskold D; Sandberg R; Lee KL; Kronqvist P; Mamaeva V; Ostling P; Mpindi J-P; Kallioniemi O; Screpanti I; Poellinger L; Sahlgren C; Lendahl U
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2013;110(6):2360-2365
Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons
Kadkhodaei B; Alvarsson A; Schintu N; Ramskold D; Volakakis N; Joodmardi E; Yoshitake T; Kehr J; Decressac M; Bjorklund A; Sandberg R; Svenningsson P; Perlmann T
Article: PLOS ONE. 2013;8(1):e53822
Efficient and Comprehensive Representation of Uniqueness for Next-Generation Sequencing by Minimum Unique Length Analyses
Storvall H; Ramskold D; Sandberg R
Article: NATURE BIOTECHNOLOGY. 2012;30(8):777-782
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Ramskold D; Luo S; Wang Y-C; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R
Article: METHODS IN MOLECULAR BIOLOGY. 2012;802:259-274
How to analyze gene expression using RNA-sequencing data.
Ramsköld D; Kavak E; Sandberg R
Article: GENES & DEVELOPMENT. 2011;25(23):2453-2464
Sequentially acting Sox transcription factors in neural lineage development
Bergsland M; Ramskold D; Zaouter C; Klum S; Sandberg R; Muhr J
Article: PLOS COMPUTATIONAL BIOLOGY. 2009;5(12):e1000598
An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
Ramskold D; Wang ET; Burge CB; Sandberg R
Article: RNA: A PUBLICATION OF THE RNA SOCIETY. 2008;14(12):2462-2464
The RNA WikiProject: Community annotation of RNA families
Daub J; Gardner PP; Tate J; Ramskold D; Manske M; Scott WG; Weinberg Z; Griffiths-Jones S; Bateman A
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Corrigendum: NATURE BIOTECHNOLOGY. 2020;38(3):374
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells (vol 87, pg 123, 2012)
Ramskold D; Luo S; Wang Y-C; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R
Review: AUTOIMMUNITY REVIEWS. 2017;16(4):343-351
Smoking and pre-existing organ damage reduce the efficacy of belimumab in systemic lupus erythematosus
Parodis I; Sjowall C; Jonsen A; Ramskold D; Zickert A; Frodlund M; Sohrabian A; Arnaud L; Ronnelid J; Malmstrom V; Bengtsson AA; Gunnarsson I
Thesis / dissertation: 2014
Progression of RNA-sequencing to single-cell applications
Ramsköld, Daniel

Anställningar

Forskningsspecialist, Cell- och molekylärbiologi, Karolinska Institutet, 2022-

Examina och utbildning

Medicine Doktorsexamen, Institutionen för cell- och molekylärbiologi, Karolinska Institutet, 2014

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