Shayan Mostafaei
About me
I'm a bioinformatician and my research interests are application of
advanced statistical methods, Bayesian inference, causal inference,
longitudinal, time-to-event and machine learning algorithms in
computational biology, health, and medicine. I'm also interested in the
statistical genetics and analyzing OMICs data as well as longitudinal data from national registry and surveys.
Education:
* PhD in Biostatistics and Bioinformatics, Tehran University of Medical Sciences, Tehran, Iran, 2018.
Postdocs
* Postdoc in Machine Learning, School of Electrical Engineering and Computer Science, Department of Intelligent Systems, Division of Information Science and Engineering, Royal Institute of Technology (KTH), Stockholm, Sweden, 2022.
** Postdoc in Dementia and Machine Learning, Division of Clinical Geriatrics, Department of Neurobiology, Care Sciences, and Society, Karolinska Institutet, Stockholm, Sweden, 2023.
Research
Advanced Clustering, Regression and Classification Algorithms
Statistical Learning for OMICs data
Bioinformatics and Statistical Genetics
Longitudinal Statistical Models for high-dimensional data
Survival and Risk Modelling
Bayesian and Network Meta-analysis for GWAS
Biological Aging
Articles
- Article: GEROSCIENCE. 2024;46(5):5003-5014
- Article: JOURNAL OF THE AMERICAN MEDICAL DIRECTORS ASSOCIATION. 2024;25(7):105011
- Article: HEALTH SCIENCE REPORTS. 2024;7(7):e2266
- Journal article: JOURNAL OF MATERNAL-FETAL AND NEONATAL MEDICINE. 2024;35(25):6600-6609
- Journal article: JOURNAL OF MATERNAL-FETAL AND NEONATAL MEDICINE. 2024;35(25):4884-4888
- Article: INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY. 2024;34(2)
- Journal article: IRANIAN JOURNAL OF ALLERGY, ASTHMA AND IMMUNOLOGY. 2024;23(1):82-96
- Article: THE JOURNAL OF PREVENTION OF ALZHEIMER'S DISEASE. 2024;:1-9
- Article: ALZHEIMER'S RESEARCH AND THERAPY. 2023;15(1):220
- Article: CLINICAL NUCLEAR MEDICINE. 2023;48(12):1035-1046
- Article: HEALTH SCIENCE REPORTS. 2023;6(12):e1746
- Journal article: ALZHEIMER'S AND DEMENTIA. 2023;19(S22)
- Journal article: ALZHEIMER'S AND DEMENTIA. 2023;19(S24)
- Journal article: ALZHEIMER'S AND DEMENTIA. 2023;19(S21)
- Article: EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING. 2023;51(1):40-53
- Journal article: ACTA BIOCHIMICA IRANICA. 2023
- Article: JAPANESE JOURNAL OF RADIOLOGY. 2023;41(11):1265-1274
- Article: JAMA NETWORK OPEN. 2023;6(10):e2338080
- Article: MOLECULAR BIOLOGY REPORTS. 2023;50(10):8201-8212
- Article: JOURNAL OF THE AMERICAN MEDICAL DIRECTORS ASSOCIATION. 2023;24(9):1381-1388
- Journal article: NUTRITION JOURNAL. 2023;22(1):35
- Article: BMC MEDICAL RESEARCH METHODOLOGY. 2023;23(1):161
- Article: SCIENTIFIC REPORTS. 2023;13(1):9480
- Article: ULTRASOUND IN OBSTETRICS AND GYNECOLOGY. 2023;61(4):511-517
- Article: CELL JOURNAL. 2023;25(3):203-211
- Article: IRANIAN JOURNAL OF ALLERGY, ASTHMA AND IMMUNOLOGY. 2023;22(1):25-33
- Journal article: COPD: JOURNAL OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE. 2022;19(1):290-299
- Article: EUROPEAN JOURNAL OF OBSTETRICS AND GYNECOLOGY AND REPRODUCTIVE BIOLOGY. 2022;279:45-49
- Article: JOURNAL OF DIGITAL IMAGING. 2022;35(6):1708-1718
- Journal article: IRANIAN JOURNAL OF MEDICAL MICROBIOLOGY. 2022;16(5):420-429
- Article: SCIENTIFIC REPORTS. 2022;12(1):14817
- Journal article: JOURNAL OF TEXTURE STUDIES. 2022;53(5):601-608
- Article: NUTRITION JOURNAL. 2022;21(1):53
- Journal article: CLINICAL AND EXPERIMENTAL MEDICINE. 2022;22(3):427-438
- Journal article: BMC EMERGENCY MEDICINE. 2022;22(1):130
- Journal article: ARCHIVES OF DISEASE IN CHILDHOOD: FETAL AND NEONATAL EDITION. 2022;107(4):371-379
- Article: COMPUTERS IN BIOLOGY AND MEDICINE. 2022;145:105467
- Article: CLINICAL RHEUMATOLOGY. 2022;41(4):1177-1183
- Article: ULTRASOUND IN OBSTETRICS AND GYNECOLOGY. 2022;59(4):506-512
- Journal article: MAJALLAH-I PIZISHKĪ-I URŪMIYYAH. 2022;32(11):824-830
- Journal article: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2022;205(5):550-562
- Journal article: BREAST CANCER. 2022;29(2):260-273
- Article: BMC PULMONARY MEDICINE. 2022;22(1):60
- Article: INFLAMMOPHARMACOLOGY. 2022;30(1):199-205
- Journal article: PRENATAL DIAGNOSIS. 2021;41(12):1524-1530
- Journal article: PRENATAL DIAGNOSIS. 2021;41(12):1582-1588
- Journal article: BMC RHEUMATOLOGY. 2021;5(1):34
- Journal article: JOURNAL OF DIGITAL IMAGING. 2021;34(5):1086-1098
- Journal article: NUTRITION AND CANCER. 2021;73(8):1539-1540
- Journal article: COMPUTERS IN BIOLOGY AND MEDICINE. 2021;136:104752
- Journal article: ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. 2021;28(32):43064-43073
- Journal article: IRANIAN JOURNAL OF ALLERGY, ASTHMA AND IMMUNOLOGY. 2021;20(3):338-349
- Journal article: GENE REPORTS. 2021;23:101080
- Journal article: BMC BIOINFORMATICS. 2021;22(1):154
- Journal article: MSPHERE. 2021;6(1):e00076-e00021
- Journal article: RESPIRATORY RESEARCH. 2021;22(1):53
- Journal article: THERAPEUTIC APHERESIS AND DIALYSIS. 2021;25(1):4-15
- Journal article: CURRENT HIV RESEARCH. 2021;19(1):27-34
- Journal article: BMC INFECTIOUS DISEASES. 2021;21(1):2
- Journal article: INTERNATIONAL IMMUNOPHARMACOLOGY. 2020;89(Pt B):107081
- Journal article: EUROPEAN RESPIRATORY JOURNAL. 2020;56(6):2002808
- Journal article: JOURNAL OF DIABETES AND METABOLIC DISORDERS. 2020;19(2):1777-1786
- Journal article: EATING AND WEIGHT DISORDERS. 2020;25(6):1561-1571
- Journal article: INTERNATIONAL IMMUNOPHARMACOLOGY. 2020;88:106913
- Journal article: THE BREAST JOURNAL. 2020;26(11):2323-2326
- Journal article: MICROBIAL PATHOGENESIS. 2020;147:104355
- Journal article: BMC CANCER. 2020;20(1):916
- Journal article: AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE. 2020;103(2):834-837
- Journal article: BMC MEDICAL GENETICS. 2020;21(1):147
- Journal article: SYSTEMS BIOLOGY IN REPRODUCTIVE MEDICINE. 2020;66(4):267-280
- Journal article: ASIAN PACIFIC JOURNAL OF CANCER PREVENTION. 2020;21(5):1431-1439
- Journal article: BMC CARDIOVASCULAR DISORDERS. 2020;20(1):193
- Journal article: REUMATISMO. 2020;72(1):44-51
- Journal article: PATHOLOGY RESEARCH AND PRACTICE. 2020;216(4):152855
- Journal article: INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH. 2020;17(6):E1981-1981
- Journal article: BMC NEPHROLOGY. 2020;21(1):30
- Journal article: ADVANCES IN RHEUMATOLOGY. 2020;60(1):8
- Journal article: PLOS ONE. 2020;15(2):e0227997
- Journal article: RADIOLOGIA MEDICA. 2020;125(1):87-97
- Journal article: DIABETES, METABOLIC SYNDROME AND OBESITY. 2020;13:879-887
- Journal article: META GENE. 2019;22:100613
- Journal article: BIOMEDICAL JOURNAL. 2019;42(6):403-410
- Journal article: MEDICAL JOURNAL OF THE ISLAMIC REPUBLIC OF IRAN. 2019;33(1):835-840
- Journal article: ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. 2019;15(5):E59-E67
- Journal article: META GENE. 2019;21:100581
- Journal article: JOURNAL OF CELLULAR PHYSIOLOGY. 2019;234(10):17159-17171
- Journal article: BMC PSYCHIATRY. 2019;19(1):207
- Journal article: PHARMACOLOGICAL REPORTS. 2019;71(3):393-398
- Journal article: JOURNAL OF CELLULAR PHYSIOLOGY. 2019;234(4):3790-3799
- Journal article: IRANIAN JOURNAL OF ALLERGY, ASTHMA AND IMMUNOLOGY. 2019;18(2):173-181
- Journal article: IRANIAN JOURNAL OF IMMUNOLOGY. 2019;16(1):71-83
- Journal article: MOLECULAR PHYLOGENETICS AND EVOLUTION. 2019;132:46-52
- Journal article: ADVANCES IN RHEUMATOLOGY. 2019;59(1):9
- Journal article: BMC MEDICAL GENETICS. 2019;20(1):24
- Journal article: BMC CANCER. 2019;19(1):61
- Journal article: IMMUNOPHARMACOLOGY AND IMMUNOTOXICOLOGY. 2019;41(1):95-101
- Journal article: MEDICAL PHYSICS. 2019;46(1):414
- Journal article: MEDICAL JOURNAL OF THE ISLAMIC REPUBLIC OF IRAN. 2019;33:137
- Journal article: SCIENTIFIC REPORTS. 2018;8(1):17612
- Journal article: SCIENTIFIC REPORTS. 2018;8(1):15775
- Journal article: INTERNATIONAL JOURNAL OF RHEUMATIC DISEASES. 2018;21(10):1746-1755
- Journal article: IMMUNOPHARMACOLOGY AND IMMUNOTOXICOLOGY. 2018;40(5):393-400
- Journal article: FUTURE VIROLOGY. 2018;13(9):637-645
- Journal article: INFLAMMATION RESEARCH. 2018;67(9):727-736
- Journal article: IMMUNOLOGICAL INVESTIGATIONS. 2018;47(6):632-642
- Journal article: IMMUNOPHARMACOLOGY AND IMMUNOTOXICOLOGY. 2018;40(4):297-302
- Journal article: META GENE. 2018;16:241-247
- Journal article: INFLAMMOPHARMACOLOGY. 2018;26(3):737-745
- Journal article: JOURNAL OF COSMETIC DERMATOLOGY. 2018;17(3):549-554
- Journal article: THE CLINICAL RESPIRATORY JOURNAL. 2018;12(5):1787-1801
- Journal article: CLINICAL ONCOLOGY. 2018;27(2):393-398
- Journal article: RHEUMATOLOGY INTERNATIONAL. 2018;38(3):489-498
- Journal article: TRANSFUSION AND APHERESIS SCIENCE. 2018;57(1):107-110
- Journal article: MICROBIAL PATHOGENESIS. 2018;115:189-193
- Journal article: RHEUMATOLOGY RESEARCH. 2018;3(1):35-40
- Journal article: CRESCENT JOURNAL OF MEDICAL AND BIOLOGICAL SCIENCES. 2018;5(1):14-20
- Journal article: MICROBIAL PATHOGENESIS. 2018;114:436-443
- Journal article: PHYSICA MEDICA. 2018;45:192-197
- Journal article: MICROBIAL PATHOGENESIS. 2017;113:190-196
- Journal article: IRANIAN JOURNAL OF ALLERGY, ASTHMA AND IMMUNOLOGY. 2017;16(6):471-479
- Journal article: WOUND REPAIR AND REGENERATION. 2017;25(6):1002-1007
- Journal article: JOURNAL OF MEDICAL MICROBIOLOGY. 2017;66(11):1602-1606
- Journal article: INTERNATIONAL JOURNAL OF RHEUMATIC DISEASES. 2017;20(10):1551-1561
- Journal article: IRANIAN JOURNAL OF ALLERGY, ASTHMA AND IMMUNOLOGY. 2017;16(5):418-424
- Journal article: MICROBIAL PATHOGENESIS. 2017;109:239-247
- Journal article: MICROBIAL PATHOGENESIS. 2017;109:8-14
- Journal article: FUTURE VIROLOGY. 2017;12(6):309-318
- Journal article: TUMOR BIOLOGY. 2017;39(6):1010428317703634-101042831770363
- Journal article: RHEUMATOLOGY RESEARCH. 2017;2(3):103-107
- Journal article: FUTURE VIROLOGY. 2017;12(4):227-236
- Journal article: TRANSFUSION AND APHERESIS SCIENCE. 2017;56(2):226-232
- Journal article: TRANSFUSION AND APHERESIS SCIENCE. 2017;56(2):160-164
- Journal article: RHEUMATOLOGY RESEARCH. 2017;2(1):31-38
- Journal article: IRANIAN RED CRESCENT MEDICAL JOURNAL. 2017;19(4)
- Journal article: HIV & AIDS REVIEW. INTERNATIONAL JOURNAL OF HIV-RELATED PROBLEMS. 2017;16(2):100-106
- Journal article: LUPUS. 2016;25(11):1244-1253
- Journal article: RHEUMATOLOGY RESEARCH. 2016;In Press(In Press)
- Journal article: IRANIAN JOURNAL OF PARASITOLOGY. 2015;10(4):632-637
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All other publications
- Letter: FERTILITY AND STERILITY. 2024;122(2):391
- Review: AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY. 2024;230(3):e1-e2
- Review: CURRENT PROBLEMS IN CARDIOLOGY. 2023;48(8):101198
- Review: PRENATAL DIAGNOSIS. 2023;43(9):1229-1238
- Preprint: RESEARCH SQUARE. 2023
- Editorial comment: OBSTETRICAL AND GYNECOLOGICAL SURVEY. 2023;78(3):131-132
- Preprint: RESEARCH SQUARE. 2023
- Review: PRENATAL DIAGNOSIS. 2023;43(1):72-83
- Conference publication: 2022;00:1-3
- Review: AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY. 2022;227(3):430-439.e5
- Review: SYSTEMATIC REVIEWS. 2022;11(1):106
- Preprint: RESEARCH SQUARE. 2022
- Preprint: RESEARCH SQUARE. 2021
- Conference publication: 2021;00:1-3
- Conference publication: 2021;00:1-3
- Preprint: RESEARCH SQUARE. 2021
- Preprint: RESEARCH SQUARE. 2021
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Grants
- Aging and Diabetes: Unraveling the Interplay through Multi-Cohort InvestigationsKID - partial funding of doctoral education at Karolinska institutet 202414 June 2024 - 14 June 2028
- Predicting the risk of dementia based on multi-omics profiles and biological aging using generative machine-learning in two Swedish population-based cohorts and the UK BiobankLoo and Hans Osterman Foundation1 January 2024 - 31 December 2024
- Explainable Machine Learning based Medication Repurposing for DementiaIndustrial and Societal Partnership Program (ISPP)1 January 2024 - 31 December 2025
- KI Research Foundation Grants 2022-20231 November 2022 - 1 November 2023
- Personalized medicine to slow cognitive decline in dementia patients using individualized prognostic deep learning: Studies from the Swedish dementia registryFoundation for Geriatric Diseases at KI 20221 October 2022
- Causal inference using Dynamic Bayesian Networks to find medications related to slow cognitive decline in dementia: Studies from the Swedish Dementia RegistryLoo and Hans Osterman Foundation 20221 July 2022 - 1 July 2023