Anoop Tholamplackil Ambikan
Postdoctoral Researcher
E-mail: anoop.ambikan@ki.se
Visiting address: Alfred Nobels alle 8, 14183 Huddinge
Postal address: H5 Laboratoriemedicin, H5 Klin Mikrobiologi Ujjwal Neogi, 141 52 Huddinge
Part of:
- Department of Laboratory Medicine
- Division of Clinical Microbiology at Labmed
- The Systems Virology Lab – Ujjwal Neogi
About me
- I am currently working as post-doctoral researcher in The Systems Virology
Lab at Department of Laboratory Medicine. I hold Ph.D. degree in Medical
Science (specialization in systems biology applications in infectious disease
research) received from Karolinska Institutet under the supervision of Dr.
Ujjwal Neogi. My areas of interest are, systems biology, network analysis,
contextualization of networks and multi-omics analysis.
Feb 2018 - April 2023
Ph.D. in Medical Science, Karolinska Institutet, Sweden
June 2010 - July 2012
MSc in Bioinformatics, Amrita School of Biotechnology, India
Research
- My work is focused on various applications of network based systems biology
methodologies to solve problems in infectious disease research. I develop
networks representing association/co-expression among various molecular
features to identify communities of coordinated response. Contextualization
of metabolic and signalling networks specific cell/tissue is another major
area of attention. I also perform other omics data analysis such as,
TMT-lablled LC-MS/MS proteomics, quantitative metabolomics and metageomics
data.
Articles
- Article: BRAIN BEHAVIOR AND IMMUNITY. 2025;123:914-927Sardarni UK; Ambikan A; Acharya A; Johnson S; Avedissian SN; Vegvari A; Neogi U; Byrareddy SN
- Article: ISCIENCE. 2024;27(8):110501Rajaiah R; Pandey K; Acharya A; Ambikan A; Kumar N; Guda R; Avedissian SN; Montaner LJ; Cohen SM; Neogi U; Byrareddy SN
- Article: ISCIENCE. 2024;27(4):109346Di Martino E; Ambikan A; Ramskold D; Umekawa T; Giatrellis S; Vacondio D; Romero AL; Galan MG; Sandberg R; Aden U; Lauschke VM; Neogi U; Blomgren K; Kele J
- Article: NATURE COMMUNICATIONS. 2024;15(1):2532Capendale PE; Garcia-Rodriguez I; Ambikan AT; Mulder LA; Depla JA; Freeze E; Koen G; Calitz C; Sood V; de Sa RV; Neogi U; Pajkrt D; Sridhar A; Wolthers KC
- Article: VIRUS RESEARCH. 2024;341:199306Bhatt P; Varma M; Sood V; Ambikan A; Jayaram A; Babu N; Gupta S; Mukhopadhyay C; Neogi U
- Article: ALLERGY. 2024;79(1):65-79Lunjani N; Ambikan AT; Hlela C; Levin M; Mankahla A; Heldstab-Kast JI; Boonpiyathad T; Tan G; Altunbulakli C; Gray C; Nadeau KC; Neogi U; Akdis CA; O'Mahony L
- Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(37):e2304722120Ambikan AT; Elaldi N; Akusjaervi SS; Bagci B; Pektas AN; Hewson R; Bagci G; Arasli M; Appelberg S; Mardinoglu A; Sood V; Vegvari A; Benfeitas R; Gupta S; Cetin I; Mirazimi A; Neogi U
- Article: AIDS. 2023;37(7):1023-1033Svensson Akusjarvi S; Krishnan S; Ambikan AT; Mikaeloff F; Munusamy Ponnan S; Vesterbacka J; Lourda M; Nowak P; Sonnerborg A; Neogi U
- Article: LIFE SCIENCE ALLIANCE. 2022;5(9):e202201405Ambikan AT; Svensson-Akusjarvi S; Krishnan S; Sperk M; Nowak P; Vesterbacka J; Sonnerborg A; Benfeitas R; Neogi U
- Article: CELL SYSTEMS. 2022;13(8):665-681.e4Ambikan AT; Yang H; Krishnan S; Akusjarvi SS; Gupta S; Lourda M; Sperk M; Arif M; Zhang C; Nordqvist H; Ponnan SM; Sonnerborg A; Treutiger CJ; O'Mahony L; Mardinoglu A; Benfeitas R; Neogi U
- Article: ELIFE. 2022;11:e76071Neogi U; Elaldi N; Appelberg S; Ambikan A; Kennedy E; Dowall S; Bagci BK; Gupta S; Rodriguez JE; Svensson-Akusjarvi S; Monteil V; Vegvari A; Benfeitas R; Banerjea A; Weber F; Hewson R; Mirazimi A
- Article: COMMUNICATIONS BIOLOGY. 2022;5(1):357Svensson Akusjarvi S; Krishnan S; Jutte BB; Ambikan AT; Gupta S; Rodriguez JE; Vegvari A; Sperk M; Nowak P; Vesterbacka J; Svensson JP; Sonnerborg A; Neogi U
- Article: ISCIENCE. 2022;25(1):103607Akusjarvi SS; Ambikan AT; Krishnan S; Gupta S; Sperk M; Vegvari A; Mikaeloff F; Healy K; Vesterbacka J; Nowak P; Sonnerborg A; Neogi U
- Article: HRB OPEN RESEARCH. 2022;5:31O' Mahony L; Buwalda T; Blair M; Forde B; Lunjani N; Ambikan A; Neogi U; Barrett P; Geary E; O'Connor N; Dineen J; Clarke G; Kelleher E; Horgan M; Jackson A; Sadlier C
- Article: MICROBIOLOGY SPECTRUM. 2021;9(2):e0047021-e00421Ponnan SM; Thiruvengadam K; Tellapragada C; Ambikan AT; Narayanan A; Kathirvel S; Mathayan M; Shankar J; Rajaraman A; Amanulla MA; Dinesha TR; Poongulali S; Saravanan S; Murugavel KG; Swaminathan S; Velu V; Shacklett B; Neogi U; Hanna LE
- Article: JOURNAL OF VIROLOGY. 2021;95(18):e0047921-10.1128/jvi.00421Sperk M; Ambikan AT; Ray S; Singh K; Mikaeloff F; Diez RC; Narayanan A; Vesterbacka J; Nowak P; Sonnerborg A; Neogi U
- Article: BMC INFECTIOUS DISEASES. 2021;21(1):214Obasa AE; Ambikan AT; Gupta S; Neogi U; Jacobs GB
- Article: ISCIENCE. 2021;24(2):102111Sperk M; Mikaeloff F; Svensson-Akusjarvi S; Krishnan S; Ponnan SM; Ambikan AT; Nowak P; Sonnerborg A; Neogi U
- Article: FRONTIERS IN MICROBIOLOGY. 2021;12:627861Bai X; Zhang J; Hua Y; Jernberg C; Xiong Y; French N; Lofgren S; Hedenstrom I; Ambikan A; Mernelius S; Matussek A
- Article: AIDS. 2021;35(2):227-234High-throughput sequencing reveals a high prevalence of pretreatment HIV-1 drug resistance in SwedenAndersson E; Ambikan A; Brannstrom J; Aralaguppe SG; Yilmaz A; Albert J; Neogi U; Sonnerborg A
- Article: MOLECULAR & CELLULAR PROTEOMICS. 2021;20:100159Krishnan S; Nordqvist H; Ambikan AT; Gupta S; Sperk M; Svensson-Akusjarvi S; Mikaeloff F; Benfeitas R; Saccon E; Ponnan SM; Rodriguez JE; Nikouyan N; Odeh A; Ahlen G; Asghar M; Sallberg M; Vesterbacka J; Nowak P; Vegvari A; Sonnerborg A; Treutiger CJ; Neogi U
- Article: PATHOGENS. 2020;9(5):E320-320Neogi U; Hill KJ; Ambikan AT; Heng X; Quinn TP; Byrareddy SN; Soennerborg A; Sarafianos SG; Singh K
- Article: EMERGING MICROBES & INFECTIONS. 2020;9(1):1748-1760Appelberg S; Gupta S; Svensson Akusjarvi S; Ambikan AT; Mikaeloff F; Saccon E; Vegvari A; Benfeitas R; Sperk M; Stahlberg M; Krishnan S; Singh K; Penninger JM; Mirazimi A; Neogi U
- Article: FRONTIERS IN MICROBIOLOGY. 2019;10:2632Al-Farsi HM; Al-Adwani S; Ahmed S; Vogt C; Ambikan AT; Leber A; Al-Jardani A; Al-Azri S; Al-Muharmi Z; Toprak MS; Giske CG; Bergman P
- Article: METABOLITES. 2019;9(10):E210-210Babu H; Sperk M; Ambikan AT; Rachel G; Viswanathan VK; Tripathy SP; Nowak P; Hanna LE; Neogi U
- Article: VIRUSES-BASEL. 2019;11(9):E806-806Aralaguppe SG; Ambikan AT; Ashokkumar M; Kumar MM; Hanna LE; Amogne W; Sonnerborg A; Neogi U
- Article: FRONTIERS IN IMMUNOLOGY. 2019;10:1965Babu H; Ambikan AT; Gabriel EE; Akusjarvi SS; Palaniappan AN; Sundaraj V; Mupanni NR; Sperk M; Cheedarla N; Sridhar R; Tripathy SP; Nowak P; Hanna LE; Neogi U
- Article: SCIENTIFIC REPORTS. 2019;9(1):5619Bai X; Zhang J; Ambikan A; Jernberg C; Ehricht R; Scheutz F; Xiong Y; Matussek A
- Article: EBIOMEDICINE. 2018;27:40-50Zhang W; Ambikan AT; Sperk M; van Domselaar R; Nowak P; Noyan K; Russom A; Sonnerborg A; Neogi U
- Article: JOURNAL OF VIROLOGICAL METHODS. 2016;236:98-104Aralaguppe SG; Siddik AB; Manickam A; Ambikan AT; Kumar MM; Fernandes SJ; Amogne W; Bangaruswamy DK; Hanna LE; Sonnerborg A; Neogi U
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All other publications
- Book chapter: ADVANCES IN IMMUNOLOGY, VOL 150. 2024;p. 73-100Ambikan A; Akusjärvi SS; Sperk M; Neogi U
- Preprint: RES SQ. 2023;RES SQAcharya A; Ambikan AT; Thurman M; Malik MR; Dyavar SR; Végvári Á; Neogi U; Byrareddy SN
- Doctoral thesis: 2023Tholamplackil Ambikan A
Employments
- Postdoctoral Researcher, Department of Laboratory Medicine, Karolinska Institutet, 2023-2026
Degrees and Education
- Degree Of Doctor Of Philosophy, Department of Laboratory Medicine, Karolinska Institutet, 2023