Alper Eroglu

Articles

Article: SCIENTIFIC REPORTS. 2025;15(1):3811
Diffusion Smart-seq3 of breast cancer spheroids to explore spatial tumor biology and test evolutionary principles of tumor heterogeneity
Cougnoux A; Mahmoud L; Johnsson PA; Eroglu A; Gsell L; Rosenbauer J; Sandberg R; Hausser J
Article: NATURE COMMUNICATIONS. 2023;14(1):7182
NIPMAP: niche-phenotype mapping of multiplex histology data by community ecology
El Marrahi A; Lipreri F; Kang Z; Gsell L; Eroglu A; Alber D; Hausser J
Article: PLOS COMPUTATIONAL BIOLOGY. 2021;17(12):e1009670
CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data.
Thibodeau A; Khetan S; Eroglu A; Tewhey R; Stitzel ML; Ucar D
Article: GENOME BIOLOGY. 2021;22(1):252
AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data
Thibodeau A; Eroglu A; McGinnis CS; Lawlor N; Nehar-Belaid D; Kursawe R; Marches R; Conrad DN; Kuchel GA; Gartner ZJ; Banchereau J; Stitzel ML; Cicek AE; Ucar D
Article: NATURE COMMUNICATIONS. 2020;11(1):751
Sexual-dimorphism in human immune system aging
Marquez EJ; Chung C-H; Marches R; Rossi RJ; Nehar-Belaid D; Eroglu A; Mellert DJ; Kuchel GA; Banchereau J; Ucar D

Preprint: BIORXIV. 2025
Multi-cellular phenotypic dynamics during the progression of breast tumors
Gsell L; Watson SS; Sutevski I; Massara M; Soukup K; Eroglu A; Mold JE; Cougnoux A; Joyce JA; Hausser J