William Thompson

Publications
CV
Public outreach and news

Articles

Article: ROYAL SOCIETY OPEN SCIENCE. 2023;10(8):230607
On the scope of scientific hypotheses
Thompson WH; Skau S
Article: NETWORK NEUROSCIENCE. 2023;7(2):461-477
NetPlotBrain: A Python package for visualizing networks and brains
Fanton S; Thompson WH
Article: JOURNAL OF PARKINSONS DISEASE. 2023;13(3):367-378
Implicit Motor Sequence Learning in People with Mild to Moderate Parkinson's Disease: Behavior and Related Brain Function
Freidle M; Thompson WH; Albrecht F; Franzen E
Journal article: CLINICAL NEUROPHYSIOLOGY. 2023;148:e50
P-92 All is well during remission? Static and dynamic functional connectivity in euthymic bipolar disorder
Klahn L; Thompson WH; Abé C; Sparding T; Landén M
Journal article: NEUROSCIENCE APPLIED. 2023;2:101139
Functional connectivity alterations of the somatomotor network in euthymic bipolar disorder
Klahn AL; Thompson WH; Abé C; Liberg B; Sellgren CM; Klahn P; Landén M
Journal article: NEUROSCIENCE APPLIED. 2023;2:103352
Functional connectivity alterations of the somatomotor network in euthymic bipolar disorder
Klahn L; Thompson WH; Abé C; Liberg B; Klahn P; Landén M
Article: FRONTIERS IN PSYCHOLOGY. 2023;14:1205891
Taking the unreal seriously: enriching cognitive science with the notion of fictionality
Gander P; Szita K; Falck A; Thompson WH
Article: NATURE METHODS. 2022;19(12):1568-1571
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
Ciric R; Thompson WHH; Lorenz R; Goncalves M; MacNicol EEE; Markiewicz CJJ; Halchenko YOO; Ghosh SSS; Gorgolewski KJJ; Poldrack RAA; Esteban O
Article: CEREBRAL CORTEX. 2022;32(18):4039-4049
Brain network segregation and integration during painful thermal stimulation
Kastrati G; Thompson WH; Schiffler B; Fransson P; Jensen KB
Journal article: NEUROIMAGE: REPORTS. 2022;2(1):100079
Meso-scale network analysis of resting state-fMRI brain network connectivity performs poorly as a prognostic tool in critically ill traumatic brain injury patients
Tjerkaski J; Thompson WH; Bellander B-M; Thelin EP; Fransson P
Article: NPJ PARKINSONS DISEASE. 2022;8(1):12
Behavioural and neuroplastic effects of a double-blind randomised controlled balance exercise trial in people with Parkinson's disease
Freidle M; Johansson H; Ekman U; Lebedev AV; Schalling E; Thompson WH; Svenningsson P; Lovden M; Abney A; Albrecht F; Steurer H; Leavy B; Holmin S; Hagstromer M; Franzen E
Article: CEREBRAL CORTEX. 2022;32(2):266-274
Genetic Influence on Nociceptive Processing in the Human Brain-A Twin Study
Kastrati G; Rosen J; Thompson WH; Chen X; Larsson H; Nichols TE; Tracey I; Fransson P; Ahs F; Jensen KB
Article: FRONTIERS IN NEUROSCIENCE. 2022;16:942136
Multiple spatial scale mapping of time-resolved brain network reconfiguration during evoked pain in patients with rheumatoid arthritis
Fanton S; Altawil R; Ellerbrock I; Lampa J; Kosek E; Fransson P; Thompson WH
Article: FRONTIERS IN NEUROSCIENCE. 2022;16:972720
Segregation over time in functional networks in prefrontal cortex for individuals suffering from pathological fatigue after traumatic brain injury
Skau S; Johansson B; Kuhn H-G; Thompson WH
Article: JOURNAL OF PSYCHIATRY & NEUROSCIENCE. 2021;46(4):E441-E450
Genetic risk for bipolar disorder and schizophrenia predicts structure and function of the ventromedial prefrontal cortex
Abe C; Petrovic P; Ossler W; Thompson WH; Liberg B; Song J; Bergen SE; Sellgren CM; Fransson P; Ingvar M; Landen M
Article: NEUROIMAGE. 2020;223:117348
Temporal flow of hubs and connectivity in the human brain
Fransson P; Thompson WH
Article: SCIENTIFIC DATA. 2020;7(1):258
A data resource from concurrent intracranial stimulation and functional MRI of the human brain
Thompson WH; Nair R; Oya H; Esteban O; Shine JM; Petkov CI; Poldrack RA; Howard M; Adolphs R
Article: NATURE PROTOCOLS. 2020;15(7):2186-2202
Analysis of task-based functional MRI data preprocessed with fMRIPrep
Esteban O; Ciric R; Finc K; Blair R; Markiewicz CJ; Moodie CA; Kent JD; Goncalves M; DuPre E; Gomez DEP; Ye Z; Salo T; Valabregue R; Amlien IK; Liem F; Jacoby N; Stojic H; Cieslak M; Urchs S; Halchenko YO; Ghosh SS; De La Vega A; Yarkoni T; Wright J; Thompson WH; Poldrack RA; Gorgolewski KJ
Article: HUMAN BRAIN MAPPING. 2020;41(9):2347-2356
Time-varying nodal measures with temporal community structure: A cautionary note to avoid misinterpretation
Thompson WH; Kastrati G; Finc K; Wright J; Shine JM; Poldrack RA
Article: ELIFE. 2020;9:e53498
Dataset decay and the problem of sequential analyses on open datasets
Thompson WH; Wright J; Bissett PG; Poldrack RA
Article: NEUROIMAGE. 2018;178:147-161
Brain network segregation and integration during an epoch-related working memory fMRI experiment
Fransson P; Schiffler BC; Thompson WH
Article: NEUROIMAGE. 2018;172:896-902
A common framework for the problem of deriving estimates of dynamic functional brain connectivity
Thompson WH; Fransson P
Article: PLOS COMPUTATIONAL BIOLOGY. 2018;14(5):e1006196
Simulations to benchmark time-varying connectivity methods for fMRI
Thompson WH; Richter CG; Plaven-Sigray P; Fransson P
Article: ELIFE. 2017;6:e27725
The readability of scientific texts is decreasing over time
Plaven-Sigray P; Matheson GJ; Schiffler BC; Thompson WH
Article: JOURNAL OF NEUROSCIENCE. 2017;37(28):6698-6711
Top-Down Beta Enhances Bottom-Up Gamma
Richter CG; Thompson WH; Bosman CA; Fries P
Article: SCIENTIFIC REPORTS. 2017;7:44259
Spatial confluence of psychological and anatomical network constructs in the human brain revealed by a mass meta-analysis of fMRI activation
Thompson WH; Fransson P
Article: NETWORK NEUROSCIENCE. 2017;1(2):69-99
From static to temporal network theory: Applications to functional brain connectivity.
Thompson WH; Brantefors P; Fransson P
Article: SCIENTIFIC REPORTS. 2016;6:39156
Bursty properties revealed in large-scale brain networks with a point-based method for dynamic functional connectivity
Thompson WH; Fransson P
Article: BRAIN CONNECTIVITY. 2016;6(10):735-746
On Stabilizing the Variance of Dynamic Functional Brain Connectivity Time Series.
Thompson WH; Fransson P
Article: NEUROIMAGE-CLINICAL. 2016;12:1004-1012
Functional resting-state fMRI connectivity correlates with serum levels of the S100B protein in the acute phase of traumatic brain injury
Thompson WH; Thelin EP; Lilja A; Bellander B-M; Fransson P
Article: NEUROIMAGE. 2015;121:227-242
The frequency dimension of fMRI dynamic connectivity: Network connectivity, functional hubs and integration in the resting brain
Thompson WH; Fransson P
Article: NEUROIMAGE. 2015;114:57-70
A jackknife approach to quantifying single-trial correlation between covariance-based metrics undefined on a single-trial basis
Richter CG; Thompson WH; Bosman CA; Fries P
Article: FRONTIERS IN HUMAN NEUROSCIENCE. 2015;9:398
The mean-variance relationship reveals two possible strategies for dynamic brain connectivity analysis in fMRI.
Thompson WH; Fransson P
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All other publications

Preprint: PSYARXIV. 2024
Predicting long-term pain by combining brain imaging, genetics and health questionnaire data with Swedish national registries using a prospective superstruct design
Gedin F; Blomé S; Kastrati G; Lalouni M; Åhs F; Fransson P; Rosén J; Thompson WH; Jensen K
Preprint: PSYARXIV. 2023
Functional connectivity alterations of the somatomotor network in euthymic bipolar disorder
Klahn AL; Thompson WH; Abe C; Liberg B; Sellgren CM; Klahn P; Landén M
Review: JAMA NETWORK OPEN. 2022;5(11):e2243848
Placebo Response and Media Attention in Randomized Clinical Trials Assessing Cannabis-Based Therapies for Pain A Systematic Review and Meta-analysis
Gedin F; Blome S; Ponten M; Lalouni M; Fust J; Raquette A; Lundquist VV; Thompson WH; Jensen K
Preprint: RESEARCH SQUARE. 2021
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
Ciric R; Thompson W; Lorenz R; Goncalves M; MacNicol E; Markiewicz C; Halchenko Y; Ghosh S; Gorgolewski K; Poldrack R; Esteban O
Preprint: RESEARCH SQUARE. 2021
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
Ciric R; Thompson W; Lorenz R; Goncalves M; MacNicol E; Markiewicz C; Halchenko Y; Ghosh S; Gorgolewski K; Poldrack R; Esteban O
Preprint: RESEARCH SQUARE. 2021
TemplateFlow: a community archive of imaging templates and atlases for improved consistency in neuroimaging
Ciric R; Lorenz R; Thompson W; Goncalves M; MacNicol E; Markiewicz C; Halchenko Y; Ghosh S; Gorgolewski K; Poldrack R; Esteban O
Preprint: BIORXIV. 2021
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
Ciric R; Thompson W; Lorenz R; Goncalves M; MacNicol E; Markiewicz C; Halchenko Y; Ghosh S; Gorgolewski K; Poldrack R; Esteban O
Preprint: BIORXIV. 2021
Intracranial electrical stimulation alters meso-scale network integration as a function of network topology
Thompson W; Esteban O; Oya H; Nair R; Eberhardt F; Dubois J; Poldrack R; Adolphs R; Shine J
Preprint: BIORXIV. 2021
Genetic influences on brain activation and large-scale functional connectivity during nociceptive processing: a twin study
Kastrati G; Rosén J; Thompson W; Chen X; Larsson H; Nichols T; Tracey I; Fransson P; Åhs F; Jensen K
Preprint: BIORXIV. 2020
Human es-fMRI Resource: Concurrent deep-brain stimulation and whole-brain functional MRI
Thompson WH; Nair R; Oya H; Esteban O; Shine JM; Petkov CI; Poldrack RA; Howard M; Adolphs R
Editorial comment: ELIFE. 2020;9:e52157
Open exploration
Thompson WH; Wright J; Bissett PG
Review: NETWORK NEUROSCIENCE. 2020;4(1):30-69
Questions and controversies in the study of time-varying functional connectivity in resting fMRI
Lurie DJ; Kessler D; Bassett DS; Betzel RF; Breakspear M; Kheilholz S; Kucyi A; Liegeois R; Lindquist MA; McIntosh AR; Poldrack RA; Shine JM; Thompson WH; Bielczyk NZ; Douw L; Kraft D; Miller RL; Muthuraman M; Pasquini L; Razi A; Vidaurre D; Xie H; Calhoun VD
Preprint: OSF PREPRINTS. 2019
NiPreps: enabling the division of labor in neuroimaging beyond fMRIPrep
Esteban O; Wright J; Markiewicz CJ; Thompson WH; Goncalves M; Ciric R; Blair RW; Feingold F; Rokem A; Ghosh SS; Poldrack R
Preprint: BIORXIV. 2019
Dataset Decay: the problem of sequential analyses on open datasets
Thompson WH; Wright J; Bissett P; Poldrack R
Preprint: BIORXIV. 2019
Analysis of task-based functional MRI data preprocessed with fMRIPrep
Esteban O; Ciric R; Finc K; Blair R; Markiewicz CJ; Moodie CA; Kent JD; Goncalves M; DuPre E; Gomez DEP; Ye Z; Salo T; Valabregue R; Amlien IK; Liem F; Jacoby N; Stojić H; Cieslak M; Urchs S; Halchenko YO; Ghosh SS; De La Vega A; Yarkoni T; Wright J; Thompson WH; Poldrack RA; Gorgolewski KJ
Preprint: BIORXIV. 2019
Time-varying nodal measures with temporal community structure: a cautionary note to avoid misinterpretation
Thompson WH; Kastrati G; Finc K; Wright J; Shine JM; Poldrack RA
Preprint: BIORXIV. 2019
The identification of temporal communities through trajectory clustering correlates with single-trial behavioural fluctuations in neuroimaging data
Thompson WH; Wright J; Shine J; Poldrack R
Preprint: PSYARXIV. 2018
On the nature of time-varying functional connectivity in resting fMRI
Lurie DJ; Kessler D; Bassett DS; Betzel RF; Breakspear M; Keilholz S; Kucyi A; Liégeois R; Lindquist MA; McIntosh AR; Poldrack R; Shine J; Thompson WH; Bielczyk NZ; Douw L; Kraft D; Miller R; Muthuraman M; Pasquini L; Razi A; Vidaurre D; Xie H; Calhoun VD
Preprint: BIORXIV. 2018
Brain network segregation and integration during an epoch-related working memory fMRI experiment
Fransson P; Schiffler B; Hedley Thompson W
Preprint: BIORXIV. 2017
A common framework for the problem of deriving estimates of dynamic functional brain connectivity
Thompson WH; Fransson P
Preprint: BIORXIV. 2017
A simulation and comparison of dynamic functional connectivity methods
Thompson WH; Richter CG; Plavén-Sigray P; Fransson P
Thesis / dissertation: 2017
Brain networks in time : deriving and quantifying dynamic functional connectivity
Thompson, William Hedley
Preprint: BIORXIV. 2017
The readability of scientific texts is decreasing over time
Plavén-Sigray P; Matheson GJ; Schiffler BC; Thompson WH
Conference publication: PSYCHOPHYSIOLOGY. 2017;54:S11
TOP-DOWN MODULATION OF STIMULUS DRIVE VIA BETA-GAMMA CROSS-FREQUENCY INTERACTION
Richter C; Thompson W; Bosman C; Fries P
Preprint: BIORXIV. 2016
From static to temporal network theory – applications to functional brain connectivity
Thompson WH; Brantefors P; Fransson P
Preprint: BIORXIV. 2016
Top-down beta enhances bottom-up gamma
Richter CG; Thompson WH; Bosman CA; Fries P
Preprint: ARXIV. 2016
On stabilizing the variance of dynamic functional brain connectivity time series
Thompson WH; Fransson P
Preprint: ARXIV. 2016
Bursty and persistent properties of large-scale brain networks revealed with a point-based method for dynamic functional connectivity
Thompson WH; Fransson P
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Employments

Affiliated to Research, Department of Clinical Neuroscience, Karolinska Institutet, 2022-2025

Degrees and Education

Degree Of Doctor Of Philosophy, Department of Clinical Neuroscience, Karolinska Institutet, 2017

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