Trung Nghia Vu
About me
Personal webpage: https://www.meb.ki.se/sites/truvu/
2009 - 2014: PhD, Department of Mathematics and Computer Science,
University of Antwerp, Belgium.
2006 - 2008: MSc, Department of Computer Engineering, Korea Aerospace
University, South Korea.
2000 - 2004: BSC, Faculty of Technology, Vietnam National University
in Hanoi, Viet Nam.
Research
My current research focuses on development and applications of statistical
and computational methods for cancer genomics data. I closely collaborate
with Professor Yudi Pawitan to develop various bioinformatics software
for analysing sequencing data in Biostat Wiki (https://www.meb.ki.se/sites/biostatwiki/). Most of the tools are
developed and in R, Rshiny and C/C++.
*Research areas*
- Development of methods to detect non-coding RNAs including gene fusion,
and circular RNAs from RNA sequencing data
- Models to discover driver alterations in cancer
- Models to predict drug responses of tumours
- Methods to analyse single-cell sequencing data
*Research grants*
My research is supported by the Swedish Research Council, CancerFonden, and Karolinska
Institutet.
Teaching
*Supervision as main supervisor*
- Quang Thinh Trac (PhD candidate, since Nov 2020)
- Lu Pan (PhD, defended 2023)
*Supervision as co-supervisor*
- Yuying Li (PhD candidate, since Oct 2021)
- Aron Arzoomand (PhD candidate, since August 2021)
- Wenjiang Deng (PhD candidate, defended Sept 2021)
*Former group members*
- Sarath Murugan (research assistant, Jan 2020 - Oct 2020)
- Thanh Dat Nguyen (master degree, Mar 2019 - Mar 2020)
Articles
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Article: BMC BIOINFORMATICS. 2024;25(1):31
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Journal article: CONSERVATION PHYSIOLOGY. 2024;12(1):coae054
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Article: PHENOMICS. 2023;3(3):217-227
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Journal article: CANCER RESEARCH. 2023;83(7):6612
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Article: CANCER MEDICINE. 2023;12(8):10156-10168
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Article: DATA IN BRIEF. 2023;47:108932
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Article: NPJ PRECISION ONCOLOGY. 2023;7(1):32
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Article: SENSORS. 2023;23(3):1432
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Journal article: PHENOMICS. 2023;:1
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Article: NATURE COMMUNICATIONS. 2022;13(1):6733
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Article: GIGASCIENCE. 2022;11:giac091
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Article: NAR GENOMICS AND BIOINFORMATICS. 2022;4(3):lqac052
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Article: BMC GENOMICS. 2022;23(1):106
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Article: BIOINFORMATICS. 2022;38(5):1287-1294
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Article: FRONTIERS IN GENETICS. 2022;13:820493
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Article: BMC BIOINFORMATICS. 2021;22(1):495
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Article: AMERICAN JOURNAL OF HEMATOLOGY. 2021;96(5):580-588
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Article: BIOINFORMATICS. 2020;36(3):805-812
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Article: BIOINFORMATICS. 2019;35(22):4679-4687
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Article: FRONTIERS IN GENETICS. 2019;10:1331
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Article: BMC GENOMICS. 2018;19(1):786
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Article: BIOLOGY DIRECT. 2018;13(1):14
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Article: BIOINFORMATICS. 2018;34(14):2392-2400
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Article: PLOS COMPUTATIONAL BIOLOGY. 2018;14(3):e1006018
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Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2017;31(17):1396-1404
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Article: ONCOTARGET. 2016;7(42):68851-68863
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Article: BIOINFORMATICS. 2016;32(14):2128-2135
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Article: BRIEFINGS IN BIOINFORMATICS. 2015;16(2):216-231
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Article: JOURNAL OF PROTEOME RESEARCH. 2014;13(9):4175-4183
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Article: EUPA OPEN PROTEOMICS. 2014;4:87-100
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Article: IMMUNOBIOLOGY. 2014;219(1):37-44
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Article: PROTEOME SCIENCE. 2014;12(1):54
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Article: METABOLOMICS. 2013;9(6):1216-1227
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Article: METABOLITES. 2013;3(2):259-276
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Article: METABOLOMICS. 2013;9(2):311-323
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Article: BIOCHIMICA ET BIOPHYSICA ACTA: INTERNATIONAL JOURNAL OF BIOCHEMISTRY AND BIOPHYSICS. 2011;1812(11):1371-1379
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Article: BMC BIOINFORMATICS. 2011;12:405
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Article: IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS. 2009;E92D(2):346-348
- Show more
All other publications
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Preprint: ELIFE SCIENCES PUBLICATIONS, LTD. 2024
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Preprint: ELIFE SCIENCES PUBLICATIONS, LTD. 2024
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Preprint: BIORXIV. 2024
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Conference publication: 2023;00:1-4
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Conference publication: HUMAN HEREDITY. 2017;83(1):4-5
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Conference publication: 2012;1:1-4
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Conference publication: 2009;:130-136
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Book chapter: MEDICAL BIOMETRICS: LECTURE NOTES IN COMPUTER SCIENCE. 2007;p. 17-24
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Book chapter: MICAI 2006: ADVANCES IN ARTIFICIAL INTELLIGENCE: LECTURE NOTES IN COMPUTER SCIENCE. 2006;p. 532-542
Grants
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Swedish Research Council1 January 2024 - 31 December 2026
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Swedish Research Council1 January 2020 - 31 December 2023