Trung Nghia Vu
About me
Personal webpage: https://www.meb.ki.se/sites/truvu/
- 2009 - 2014: PhD, Department of Mathematics and Computer Science,
University of Antwerp, Belgium.
- 2006 - 2008: MSc, Department of Computer Engineering, Korea Aerospace
University, South Korea.
- 2000 - 2004: BSC, Faculty of Technology, Vietnam National University
in Hanoi, Viet Nam.
Research
My research focuses on developing and applying statistical and bioinformatics methods for molecular biology and medicine. I am interested in methodologies to analyze single cell data, discover fusion genes, circular RNAs, and driver genes from cancer, quantify isoform and gene expression from transcriptomics and metagenomics, predict drug responses and drug repurposing using pharmacogenomics data.
Further details can be read at the webpage of my research group: https://ki.se/en/research/research-areas-centres-and-networks/research-groups/trung-nghia-vus-research-group
Our group has developed 20 statistical and bioinformatics/statistical tools which are mostly published in a peer-reviewed scientific articles and publicly available for academic use. Most of tools are implemented using R, Rshiny, C/C++ and available at the Biostat Wiki
- webpage (https://www.meb.ki.se/sites/biostatwiki/)
Our research is supported by the Swedish Research Council, CancerFonden, and Karolinska Institutet
- webpage (https://www.meb.ki.se/sites/biostatwiki/)
Teaching
SUPERVISION
To defense
- Quang Thinh Trac (PhD student, KI, main supervisor, completed Oct 2024)
- Lu Pan (PhD student, KI, main supervisor, completed Mar 2023)
- Wenjiang Deng (PhD student, KI, co-supervisor, completed Sep 2021)
- Thanh Dat Nguyen (master student, Tel-Aviv University, thesis supervisor, completed 2020)
Ongoing
- Gulser Caliskan (postdoc, KI, main supervisor, since 2023)
- Meghana Alugunoolla (master student, Upsala University, main supervisor, since 2024)
- Yuying Li (PhD student, KI, co-supervisor, since 2021)
- Aron Arzoomand (PhD student, KI, co-supervisor, since 2021)
TEACHING
- Master course “Biostatistics” in the Master of Molecular Techniques, KI, Sweden (2023 &
- 2024)
- Doctoral course “Introduction to R for data analysis”, KI, Sweden (2025)
Articles
- Article: BMC BIOINFORMATICS. 2024;25(1):31
- Journal article: CONSERVATION PHYSIOLOGY. 2024;12(1):coae054
- Article: PHENOMICS. 2023;3(3):217-227
- Journal article: CANCER RESEARCH. 2023;83(7):6612
- Article: DATA IN BRIEF. 2023;47:108932
- Article: CANCER MEDICINE. 2023;12(8):10156-10168
- Article: NPJ PRECISION ONCOLOGY. 2023;7(1):32
- Article: SENSORS. 2023;23(3):1432
- Journal article: PHENOMICS. 2023;:1
- Article: NATURE COMMUNICATIONS. 2022;13(1):6733
- Article: GIGASCIENCE. 2022;11:giac091
- Article: NAR GENOMICS AND BIOINFORMATICS. 2022;4(3):lqac052
- Article: BMC GENOMICS. 2022;23(1):106
- Article: BIOINFORMATICS. 2022;38(5):1287-1294
- Article: FRONTIERS IN GENETICS. 2022;13:820493
- Article: BMC BIOINFORMATICS. 2021;22(1):495
- Article: AMERICAN JOURNAL OF HEMATOLOGY. 2021;96(5):580-588
- Article: BIOINFORMATICS. 2020;36(3):805-812
- Article: BIOINFORMATICS. 2019;35(22):4679-4687
- Article: FRONTIERS IN GENETICS. 2019;10:1331
- Article: BMC GENOMICS. 2018;19(1):786
- Article: BIOLOGY DIRECT. 2018;13(1):14
- Article: BIOINFORMATICS. 2018;34(14):2392-2400
- Article: PLOS COMPUTATIONAL BIOLOGY. 2018;14(3):e1006018
- Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2017;31(17):1396-1404
- Article: ONCOTARGET. 2016;7(42):68851-68863
- Article: BIOINFORMATICS. 2016;32(14):2128-2135
- Article: BRIEFINGS IN BIOINFORMATICS. 2015;16(2):216-231
- Article: JOURNAL OF PROTEOME RESEARCH. 2014;13(9):4175-4183
- Article: EUPA OPEN PROTEOMICS. 2014;4:87-100
- Article: PROTEOME SCIENCE. 2014;12(1):54
- Article: IMMUNOBIOLOGY. 2014;219(1):37-44
- Article: METABOLOMICS. 2013;9(6):1216-1227
- Article: METABOLITES. 2013;3(2):259-276
- Article: METABOLOMICS. 2013;9(2):311-323
- Article: BIOCHIMICA ET BIOPHYSICA ACTA: INTERNATIONAL JOURNAL OF BIOCHEMISTRY AND BIOPHYSICS. 2011;1812(11):1371-1379
- Article: BMC BIOINFORMATICS. 2011;12:405
- Article: IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS. 2009;E92D(2):346-348
- Show more
All other publications
- Preprint: ELIFE SCIENCES PUBLICATIONS, LTD. 2024
- Preprint: BIORXIV. 2024
- Conference publication: 2023;00:1-4
- Conference publication: HUMAN HEREDITY. 2017;83(1):4-5
- Conference publication: 2012;1:1-4
- Conference publication: 2009;:130-136
- Book chapter: MEDICAL BIOMETRICS: LECTURE NOTES IN COMPUTER SCIENCE (INCLUDING SUBSERIES LECTURE NOTES IN ARTIFICIAL INTELLIGENCE AND LECTURE NOTES IN BIOINFORMATICS). 2007;p. 17-24
- Book chapter: MICAI 2006: ADVANCES IN ARTIFICIAL INTELLIGENCE: LECTURE NOTES IN COMPUTER SCIENCE (INCLUDING SUBSERIES LECTURE NOTES IN ARTIFICIAL INTELLIGENCE AND LECTURE NOTES IN BIOINFORMATICS). 2006;p. 532-542
Grants
- Swedish Research Council1 January 2024 - 31 December 2026
- Swedish Cancer Society1 January 2023
- Swedish Research Council1 January 2020 - 31 December 2023