Salim Ghannoum

About me

I am a bioinformatician working on single-cell data and immune-oncology research. My focus is on understanding complex disease mechanisms through computational analysis.

Single-Cell Mapping of Synovial fluid and Blood Immune Landscapes in Checkpoint Inhibitor–Induced Rheumatoid Arthritis

Journal article: PLOS COMPUTATIONAL BIOLOGY. 2023;19(4):e1010995
A combined experimental-computational approach uncovers a role for the Golgi matrix protein Giantin in breast cancer progression
Ghannoum S; Fantini D; Zahoor M; Reiterer V; Phuyal S; Netto WL; Sorensen O; Iyer A; Sengupta D; Prasmickaite L; Maelandsmo GM; Kohn-Luque A; Farhan H
Journal article: CELLS. 2021;10(2):469
CellMAPtracer: A User-Friendly Tracking Tool for Long-Term Migratory and Proliferating Cells Associated with FUCCI Systems
Ghannoum S; Antos K; Leoncio Netto W; Gomes C; Kohn-Luque A; Farhan H
Journal article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2021;22(3):1399
DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
Ghannoum S; Leoncio Netto W; Fantini D; Ragan-Kelley B; Parizadeh A; Jonasson E; Stahlberg A; Farhan H; Kohn-Luque A
Journal article: CELLS. 2020;9(3):759
Total mRNA Quantification in Single Cells: Sarcoma Cell Heterogeneity
Jonasson E; Andersson L; Dolatabadi S; Ghannoum S; Aman P; Stahlberg A
Journal article: FRONTIERS IN GENETICS. 2019;10:500
Identification of Breast Cancer Stem Cell Related Genes Using Functional Cellular Assays Combined With Single-Cell RNA Sequencing in MDA-MB-231 Cells
Jonasson E; Ghannoum S; Persson E; Karlsson J; Kroneis T; Larsson E; Landberg G; Stahlberg A

Preprint: BIORXIV. 2019
DIscBIO: a user-friendly pipeline for biomarker discovery in single-cell transcriptomics
Ghannoum S; Netto WL; Fantini D; Ragan-Kelley B; Parizadeh A; Jonasson E; Ståhlberg A; Farhan H; Köhn-Luque A