Miguel Castresana-Aguirre

Publications
Public outreach and news

Articles

Article: BREAST CANCER RESEARCH. 2024;26(1):38
Clinically relevant gene signatures provide independent prognostic information in older breast cancer patients
Castresana-Aguirre M; Johansson A; Matikas A; Foukakis T; Lindstroem LS; Tobin NP
Journal article: BRIEFINGS IN BIOINFORMATICS. 2024;25(2):bbae069
Benchmarking enrichment analysis methods with the disease pathway network
Buzzao D; Castresana-Aguirre M; Guala D; Sonnhammer ELL
Article: NAR GENOMICS AND BIOINFORMATICS. 2022;4(4):lqac093
TOPAS, a network-based approach to detect disease modules in a top-down fashion
Buzzao D; Castresana-Aguirre M; Guala D; Sonnhammer ELL
Article: BIOINFORMATICS. 2022;38(9):2659-2660
PathwAX II: network-based pathway analysis with interactive visualization of network crosstalk
Ogris C; Castresana-Aguirre M; Sonnhammer ELL
Article: FRONTIERS IN GENETICS. 2022;13:855766
Benefits and Challenges of Pre-clustered Network-Based Pathway Analysis
Castresana-Aguirre M; Guala D; Sonnhammer ELL
Article: SCIENTIFIC REPORTS. 2021;11(1):20687
Drug repurposing improves disease targeting 11-fold and can be augmented by network module targeting, applied to COVID-19
Rivero-Garcia I; Castresana-Aguirre M; Guglielmo L; Guala D; Sonnhammer ELL
Article: BIOINFORMATICS ADVANCES. 2021;1(1):vbab010
PathBIX-a web server for network-based pathway annotation with adaptive null models
Castresana-Aguirre M; Persson E; Sonnhammer ELL
Article: JOURNAL OF MOLECULAR BIOLOGY. 2021;433(11):166835
FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity
Persson E; Castresana-Aguirre M; Buzzao D; Guala D; Sonnhammer ELL
Article: SCIENTIFIC REPORTS. 2020;10(1):13585
Pathway-specific model estimation for improved pathway annotation by network crosstalk
Castresana-Aguirre M; Sonnhammer ELL
Article: SCIENTIFIC REPORTS. 2020;10(1):10390
RNA-seq reveals altered gene expression levels in proximal tubular cell cultures compared to renal cortex but not during early glucotoxicity
Nilsson LM; Castresana-Aguirre M; Scott L; Brismar H

All other publications

Preprint: BIORXIV. 2025
Decoding Cell Cycle Phase Variations in Cancer Hallmarks Across Breast Cancer Subgroups
Castresana-Aguirre M; Matikas A; Lindström LS; Tobin NP
Preprint: BIORXIV. 2023
Benchmarking enrichment analysis methods with the disease pathway network
Buzzao D; Castresana-Aguirre M; Guala D; Sonnhammer ELL

Articles

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