Mateusz Kaduk

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Articles

Article: IMMUNITY. 2023;56(3):635-652.e6
Archaic humans have contributed to large-scale variation in modern human T cell receptor genes
Corcoran M; Chernyshev M; Mandolesi M; Narang S; Kaduk M; Ye K; Sundling C; Farnert A; Kreslavsky T; Bernhardsson C; Larena M; Jakobsson M; Hedestam GBK
Article: FRONTIERS IN IMMUNOLOGY. 2023;14:1125884
Adaptive immune receptor genotyping using the corecount program
Narang S; Kaduk M; Chernyshev M; Hedestam GBKB; Corcoran MM
Article: NPJ VACCINES. 2022;7(1):152
Fine-mapping the immunodominant antibody epitopes on consensus sequence-based HIV-1 envelope trimer vaccine candidates
Reiss EIMM; van Haaren MM; van Schooten J; Claireaux MAF; Maisonnasse P; Antanasijevic A; Allen JD; Bontjer I; Torres JL; Lee W-H; Ozorowski G; Bernat NV; Kaduk M; Aldon Y; Burger JA; Chawla H; Aartse A; Tolazzi M; Gao H; Mundsperger P; Crispin M; Montefiori DC; Hedestam GBK; Scarlatti G; Ward AB; Le Grand R; Shattock R; Dereuddre-Bosquet N; Sanders RW; van Gils MJ
Article: FRONTIERS IN IMMUNOLOGY. 2022;13:818440
Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque
Kaduk M; Corcoran M; Hedestam GBK
Article: IMMUNITY. 2021;54(2):355-366.e4
Rhesus and cynomolgus macaque immunoglobulin heavy-chain genotyping yields comprehensive databases of germline VDJ alleles
Bernat NV; Corcoran M; Nowak I; Kaduk M; Dopico XC; Narang S; Maisonasse P; Dereuddre-Bosquet N; Murrell B; Hedestam GBK
Article: FRONTIERS IN IMMUNOLOGY. 2021;12:815680
VDJ Gene Usage in IgM Repertoires of Rhesus and Cynomolgus Macaques
Chernyshev M; Kaduk M; Corcoran M; Hedestam GBK
Article: BMC BIOINFORMATICS. 2019;20(1):523
Domainoid: domain-oriented orthology inference.
Persson E; Kaduk M; Forslund SK; Sonnhammer ELL
Article: METHODS IN MOLECULAR BIOLOGY. 2019;1910:469-504
Evolution of Protein Domain Architectures.
Forslund SK; Kaduk M; Sonnhammer ELL
Article: FRONTIERS IN IMMUNOLOGY. 2019;10:660
High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis
Bernat NV; Corcoran M; Hardt U; Kaduk M; Phad GE; Martin M; Hedestam GBK
Article: NUCLEIC ACIDS RESEARCH. 2018;46(D1):D601-D607
FunCoup 4: new species, data, and visualization.
Ogris C; Guala D; Sonnhammer ELL
Article: BIOINFORMATICS. 2017;33(8):1154-1159
Improved orthology inference with Hieranoid 2.
Kaduk M; Sonnhammer E
Article: NUCLEIC ACIDS RESEARCH. 2017;45(D1):D687-D690
HieranoiDB: a database of orthologs inferred by Hieranoid.
Kaduk M; Riegler C; Lemp O; Sonnhammer ELL
Article: NEW PHYTOLOGIST. 2015;205(3):1288-1295
Transgenic hybrid aspen trees with increased gibberellin (GA) concentrations suggest that GA acts in parallel with FLOWERING LOCUS T2 to control shoot elongation.
Eriksson ME; Hoffman D; Kaduk M; Mauriat M; Moritz T

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