Sanghita Banerjee
About me
I am a bioinformatician/computational biologist having experiences over more than 6 years with comprehensive background in computational genomics and working with high throughput sequencing datasets. I developed proficieny in handling and analysing different forms of NGS datasets including bulk RNAseq, single-cell, spatial transcriptomics, scATACseq and multi-omics data. I am competent with Python, R and shell scripting as well as working in Linux environments and HPC computing.
In my earlier postdoctoral positions, I gained knowledge in the systems biology of gut, and inflammation-associated diseases like Crohn's and Colitis.Educational Qualification
- PhD from Indian Statistical Institute (Kolkata, India) in 2018.
- Master's in Bioinformatics
- Bachelor's in Genetics
Research
Presently, I am characterising the different subtypes of enteric neurons and their transcriptional regulators in maintaining the gut homeostasis.
Articles
- Article: EBIOMEDICINE. 2023;94:104691Devarakonda S; Thorsell A; Hedenstrom P; Rezapour A; Heden L; Banerjee S; Johansson MEV; Birchenough G; Moren AT; Gustavsson K; Skokic V; Pettersson VL; Sjoberg F; Kalm M; Al Masri M; Ekh M; Fagman H; Wolving M; Perkins R; Morales RA; Castillo F; Villablanca E; Yrlid U; Bergmark K; Steineck G; Bull C
- Article: JCI INSIGHT. 2023;8(4):e161042Sorini C; Tripathi KP; Wu S; Higdon SM; Wang J; Cheng L; Banerjee S; Reinhardt A; Kreslavsky T; Thorell A; Engstrand L; Du J; Villablanca EJ