Rula Zain
Research Group Leader
E-mail: rula.zain@ki.se
Visiting address: Nobels väg 7, 17165 Solna
Postal address: H5 Laboratoriemedicin, H5 BCM Zain, 141 52 Huddinge
Part of:
- Department of Laboratory Medicine
- Division of Biomolecular and Cellular Medicine (BCM)
- Molecular Cell Biology and Gene Therapy Science
About me
Associate Professor in Chemical Biology
Research group leader
Deputy head – Biomolecular and Cellular Medicine (BCM)
Head of Center of Rare Diseases
RnD – Karolinska ATMP Center
Karolinska Institutet – Karolinska University Hospital
Research
Research area/interest: Chemical Biology of nucleic acids, non-B-DNA
structures in gene regulation, structure-specific nucleic acid binding of
small molecules, tandem-repeat expansion disorders, nucleic-acid therapeutics including chemically modified oligonucleotides.
Articles
- Article: RSC CHEMICAL BIOLOGY. 2025;6(5):761-771Bestas B; Estupinan HY; Wang Q; Kharazi S; He C; K. Mohammad D; Gupta D; Wiklander OPB; Lehto T; Lundin KE; Berglof A; Karlsson MCI; Abendroth F; El Andaloussi S; Gait MJ; Wood MJA; Leumann CJ; Stetsenko DA; Mansson R; Wengel J; Zain R; Smith CIE
- Article: SCIENTIFIC REPORTS. 2025;15(1):814Hamasy A; Hussain A; Mohammad DK; Wang Q; Sfetcovici MG; Nore BF; Mohamed AJ; Zain R; Smith CIE
- Article: MOLECULAR THERAPY NUCLEIC ACIDS. 2024;35(4):102348Umek T; Lundin KE; Mowoe MO; Hao Y; Roudi S; Zura L; Jorgensen PT; Lou C; Hagey DW; Wengel J; Smith CIE; Zain R
- Article: BLOOD ADVANCES. 2024;8(8):1981-1990Estupinan HY; Bouderlique T; He C; Berglof A; Cappelleri A; Frengen N; Zain R; Karlsson MCI; Mansson R; Smith CIE
- Article: NUCLEIC ACIDS RESEARCH. 2023;51(16):8532-8549Rastokina A; Cebrian J; Mozafari N; Mandel NH; Smith CIE; Lopes M; Zain R; Mirkin SM
- Article: HUMAN MUTATION. 2023;2023:5797541-12Schaafsma GCP; Vaeliaho J; Wang Q; Bergloef A; Zain R; Smith CIE; Vihinen M
- Journal article: OPEN ACCESS GOVERNMENT. 2023;39(1):22-23Smith E; Zain R; Hagey DW
- Article: FRONTIERS IN BIOSCIENCE-LANDMARK. 2023;28(6):124Hamada-Kawaguchi N; Nore BF; Zain R; Engstroem Y; Smith CIE; Yamamoto D
- Article: BLOOD ADVANCES. 2023;7(9):1929-1943Naeem A; Utro F; Wang Q; Cha J; Vihinen M; Martindale S; Zhou Y; Ren Y; Tyekucheva S; Kim AS; Fernandes SM; Saksena G; Rhrissorrakrai K; Levovitz C; Danysh BP; Slowik K; Jacobs RA; Davids MS; Lederer JA; Zain R; Smith CIE; Leshchiner I; Parida L; Getz G; Brown JR
- Article: NUCLEIC ACID THERAPEUTICS. 2023;33(2):117-131Saher O; Zaghloul EMM; Umek T; Hagey DWW; Mozafari N; Danielsen MBB; Gouda ASS; Lundin KEE; Jorgensen PTT; Wengel J; Smith CIE; Zain R
- Article: NUCLEIC ACID THERAPEUTICS. 2022;32(3):221-233Honcharenko D; Rocha CSJ; Lundin KE; Maity J; Milton S; Tedebark U; Murtola M; Honcharenko M; Slaitas A; Smith CIE; Zain R; Stromberg R
- Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022;23(6):3103Bergquist H; Inturi R; Zain R; Punga T
- Article: ADVANCED HEALTHCARE MATERIALS. 2022;11(5):e2101658Bost JP; Saher O; Hagey D; Mamand DR; Liang X; Zheng W; Corso G; Gustafsson O; Gorgens A; Smith CIE; Zain R; El Andaloussi S; Gupta D
- Article: LEUKEMIA. 2022;36(2):476-481Blixt L; Bogdanovic G; Buggert M; Gao Y; Hober S; Healy K; Johansson H; Kjellander C; Mravinacova S; Muschiol S; Nilsson P; Palma M; Pin E; Smith CIE; Stromberg O; Chen MS; Zain R; Hansson L; Osterborg A
- Article: NUCLEIC ACID THERAPEUTICS. 2021;31(6):443-456Umek T; Olsson T; Gissberg O; Saher O; Zaghloul EM; Lundin KE; Wengel J; Hanse E; Zetterberg H; Vizlin-Hodzic D; Smith CIE; Zain R
- Article: HEMASPHERE. 2021;5(5):e564Mulder TA; Pena-Perez L; Berglof A; Meinke S; Estupinan HY; Heimersson K; Zain R; Mansson R; Smith CIE; Palma M
- Article: LEUKEMIA. 2021;35(5):1317-1329Estupinan HY; Wang Q; Berglof A; Schaafsma GCP; Shi Y; Zhou L; Mohammad DK; Yu L; Vihinen M; Zain R; Smith CIE
- Article: PHARMACEUTICS. 2021;13(1):116Daralnakhla H; Saher O; Zamolo S; Bazaz S; P. Bost J; Heitz M; Lundin KE; El Andaloussi S; Darbre T; Reymond J-L; Zain R; Smith CIE
- Journal article: HEMASPHERE. 2021;5(5)Mulder TA; Pena-Perez L; Berglof A; Meinke S; Estupinan HY; Heimersson K; Zain R; Mansson R; Smith CIE; Palma M
- Article: BLOOD ADVANCES. 2020;4(11):2439-2450Estupinan HY; Bouderlique T; He C; Berglof A; Gupta D; Saher O; Daza Cruz MA; Pena-Perez L; Yu L; Zain R; Karlsson MCI; Mansson R; Smith CIE
- Article: PHARMACEUTICS. 2019;11(12):E666-666Saher O; Lehto T; Gissberg O; Gupta D; Gustafsson O; EL Andaloussi S; Darbre T; Lundin KE; Smith CIE; Zain R
- Article: MOLECULES. 2019;24(6):E1180-1180Hande M; Saher O; Lundin KE; Smith CIE; Zain R; Lonnberg T
- Article: MOLECULES. 2019;24(5):E1000-1000Umek T; Sollander K; Bergquist H; Wengel J; Lundin KE; Smith CIE; Zain R
- Article: PLOS ONE. 2019;14(2):e0211651Xu Y; Gissberg O; Pabon-Martinez YV; Wengel J; Lundin KE; Smith CIE; Zain R; Nilsson L; Villa A
- Article: METHODS IN MOLECULAR BIOLOGY. 2019;2036:3-16Lundin KE; Gissberg O; Smith CIE; Zain R
- Article: EUROPEAN JOURNAL OF PHARMACEUTICS AND BIOPHARMACEUTICS. 2018;132:29-40Saher O; Rocha CSJ; Zaghioul EM; Wiklander OPB; Zamolo S; Heitz M; Ezzat K; Gupta D; Reymond J-L; Zain R; Hollfelder F; Darbre T; Lundin KE; El Andaloussi S; Smith CIE
- Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2018;504(4):749-752Translocation-generated ITK-FER and ITK-SYK fusions induce STAT3 phosphorylation and CD69 expressionFathi NN; Mohammad DK; Gorgens A; El Andaloussi S; Zain R; Nore BF; Smith CIE
- Article: SCIENTIFIC REPORTS. 2017;7(1):11043Pabon-Martinez YV; Xu Y; Villa A; Lundin KE; Geny S; Nguyen C-H; Pedersen EB; Jorgensen PT; Wengel J; Nilsson L; Smith CIE; Zain R
- Article: ACS OMEGA. 2017;2(5):2165-2177Hartono YD; Pabon-Martinez YV; Uyar A; Wengel J; Lundin KE; Zain R; Smith CIE; Nilsson L; Villa A
- Article: NUCLEIC ACIDS RESEARCH. 2017;45(9):5153-5169Zaghloul EM; Gissberg O; Moreno PMD; Siggens L; Hallbrink M; Jorgensen AS; Ekwall K; Zain R; Wengel J; Lundin KE; Smith CIE
- Article: NUCLEIC ACID THERAPEUTICS. 2016;26(6):381-391Rocha CSJ; Lundin KE; Behlke MA; Zain R; EL Andaloussi S; Smith CIE
- Article: PLOS ONE. 2016;11(11):e0165788Bergquist H; Rocha CSJ; Alvarez-Asencio R; Chi-Hung N; Rutland MW; Smith CIE; Good L; Nielsen PE; Zain R
- Article: ORGANIC & BIOMOLECULAR CHEMISTRY. 2016;14(23):5210-5213Ghidini A; Bergquist H; Murtola M; Punga T; Zain R; Stromberg R
- Article: NUCLEIC ACID THERAPEUTICS. 2016;26(3):183-189Gissberg O; Zaghloul EM; Lundin KE; Chi-Hung N; Landras-Guetta C; Wengel J; Zain R; Smith CIE
- Article: NUCLEIC ACIDS RESEARCH. 2016;44(5):2007-2019Geny S; Moreno PMD; Krzywkowski T; Gissberg O; Andersen NK; Isse AJ; El-Madani AM; Lou C; Pabon YV; Anderson BA; Zaghloul EM; Zain R; Hrdlicka PJ; Jorgensen PT; Nilsson M; Lundin KE; Pedersen EB; Wengel J; Smith CIE
- Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2015;290(8):5174-5189Guo M; Hundseth K; Ding H; Vidhyasagar V; Inoue A; Chi-Hung N; Zain R; Lee JS; Wu Y
- Article: NUCLEIC ACIDS RESEARCH. 2013;41(5):3257-3273Moreno PMD; Geny S; Pabon YV; Bergquist H; Zaghloul EM; Rocha CSJ; Oprea II; Bestas B; El Andaloussi S; Jorgensen PT; Pedersen EB; Lundin KE; Zain R; Wengel J; Smith CIE
- Article: CHEMBIOCHEM. 2009;10(16):2629-2637Bergquist H; Nikravesh A; Fernandez RD; Larsson V; Nguyen C-H; Good L; Zain R
- Article: MOLECULAR THERAPY. 2007;15(8):1537-1542Nikravesh A; Dryselius R; Faridani OR; Goh S; Sadeghizadeh M; Behmanesh M; Ganyu A; Klok EJ; Zain R; Good L
- Article: JOURNAL OF MOLECULAR BIOLOGY. 2005;351(4):776-783Amiri H; Nekhotiaeva N; Sun JS; Nguyen CH; Grierson DS; Good L; Zain R
- Article: CHEMBIOCHEM. 2004;5(11):1550-1557Zaid A; Sun JS; Nguyen CH; Bisagni E; Garestier T; Grierson DS; Zain R
- Article: CHEMBIOCHEM. 2003;4(9):856-862Zain R; Polverari D; Nguyen CH; Blouquit Y; Bisagni E; Garestier T; Grierson DS; Sun JS
- Article: CHEMISTRY AND BIOLOGY. 1999;6(11):771-777Zain R; Marchand C; Sun JS; Nguyen CH; Bisagni E; Garestier T; Hélène C
- Journal article: CHEMINFORM. 1997;28(48):noBOLLMARK M; KERS A; KERS I; SZABO T; ZAIN R; STAWINSKI J; CIESLAK J; JANKOWSKA J; KRASZEWSKI A
- Article: NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS. 1997;16(5-6):679-684Bollmark M; Kers A; Kers I; Szabo T; Zain R; Stawinski J
- Journal article: CHEMINFORM. 1997;28(5):noZAIN R; STAWINSKI J
- Article: JOURNAL OF ORGANIC CHEMISTRY. 1996;61(19):6617-6622Zain R; Stawinski J
- Journal article: CHEMINFORM. 1996;27(25):noKERS A; KERS I; KRASZEWSKI A; SOBKOWSKI M; SZABO T; THELIN M; ZAIN R; STAWINSKI J
- Article: TETRAHEDRON LETTERS. 1996;37(20):3537-3540Bollmark M; Zain R; Stawinski J
- Article: JOURNAL OF THE CHEMICAL SOCIETY, PERKIN TRANSACTIONS 2. 1996;(5):795-799Zain R; Stawinski J
- Article: NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS. 1996;15(1-3):361-378Kers A; Kers I; Kraszewski A; Sobkowski M; Szabo T; Thelin M; Zain R; Stawinski J
- Article: JOURNAL OF ORGANIC CHEMISTRY. 1995;60(25):8241-8244Zain R; Stromberg R; Stawinski J
- Journal article: COLLECTION OF CZECHOSLOVAK CHEMICAL COMMUNICATIONS. 1993;58(s1):79-81Stawinski J; Strömberg R; Zain R
- Journal article: CHEMINFORM. 1992;23(47):noSTAWINSKI J; STROEMBERG R; ZAIN R
- Journal article: TETRAHEDRON LETTERS. 1992;33(22):3185-3188Stawiński J; Strömberg R; Zain R
- Journal article: NUCLEIC ACIDS SYMPOSIUM SERIES (2004). 1991;(24):95-98Stawinski J; Strömberg R; Szabo T; Thelin M; Westman E; Zain R
- Journal article: NUCLEIC ACIDS SYMPOSIUM SERIES (2004). 1991;(24):230Stawinski J; Strömberg R; Zain R
- Journal article: NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS. 1991;10(1-3):515-516Stawinski J; Stromberg R; Zain R
- Journal article: CHEMINFORM. 1990;21(43):noSTAWINSKI J; THELIN M; WESTMAN E; ZAIN R
- Journal article: JOURNAL OF ORGANIC CHEMISTRY. 1990;55(11):3503-3506Stawinski J; Thelin M; Westman E; Zain R
- Journal article: COLLECTION OF CZECHOSLOVAK CHEMICAL COMMUNICATIONS. 1990;55(s1):141-144Stawinski J; Szabó T; Thelin M; Westman E; Zain R
- Journal article: NUCLEIC ACIDS SYMPOSIUM SERIES (2004). 1989;(21):47-48Stawiński J; Szabó T; Thelin M; Westman E; Zain R
- Journal article: TETRAHEDRON LETTERS. 1989;30(16):2157-2160Stawiński J; Thelin M; Zain R
- Show more
All other publications
- Review: LAKARTIDNINGEN. 2025;122:24028I Edvard Smith C; Zain R; Blomberg P
- Editorial comment: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2024;25(22):11968Smith CIE; Burger JA; Zain R
- Letter: EUROPEAN JOURNAL OF HAEMATOLOGY. 2024;113(1):130-131Smith CIE; Zain R
- Preprint: BIORXIV. 2024Mozafari N; Milagres S; Rocha SJ; Vargiu CM; Freyberger F; Saher O; Umek T; Blomberg P; Jørgensen P; Edvard Smith CI; Wengel J; Zain R
- Conference publication: BLOOD. 2022;140:6981-6982Naeem AS; Utro F; Wang Q; Cha J; Vihinen M; Martindale SP; Zhou Y; Tyekucheva S; Kim AS; Fernandes SM; Fardoun R; Saksena G; Rhrissorrakrai K; Levovitz C; Danysh BP; Slowik K; Jacobs R; Davids MS; Zain R; Smith ECI; Leshchiner I; Parida L; Getz G; Brown JR
- Preprint: BIORXIV. 2022Rastokina A; Mozafari N; Cebrián J; Smith CIE; Mirkin S; Zain R
- Preprint: BIORXIV. 2022Rastokina A; Cebrián J; Mandel N; Zain R; Lopes M; Mirkin S
- Review: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2022;95(4):e13153Smith CIE; Zain R; osterborg A; Palma M; Buggert M; Bergman P; Bryceson Y
- Editorial comment: FRONTIERS IN IMMUNOLOGY. 2021;12:804735Smith CIE; Brown JR; Zain R
- Review: FRONTIERS IN IMMUNOLOGY. 2021;12:694853Zain R; Vihinen M
- Review: FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 2021;9:630942Estupinan HY; Berglof A; Zain R; Smith CIE
- Conference publication: BLOOD. 2019;134:5759Velasquez HYE; Shi Y; Mohammad DK; Wang Q; Vihinen M; Zain R; Berglof A; Smith ECI
- Review: NEUROTHERAPEUTICS. 2019;16(2):248-262Zain R; Smith CIE
- Review: ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY. 2019;59:605-630Smith CIE; Zain R
- Conference publication: MOLECULAR THERAPY. 2017;25(5):123Smith CIE; Zaghloul EM; Gissberg O; Zain R; Wengel J; Lundin KE
- Conference publication: HUMAN GENE THERAPY. 2015;26(10):A47Pabon YV; Lundin KE; Wengel J; Smith CIE; Zain R
- Conference publication: HUMAN GENE THERAPY. 2015;26(10):A44Gissberg O; Zaghloul E; Lundin K; Zain R; Wengel J; Smith CIE
- Review: CELLULAR AND MOLECULAR LIFE SCIENCES. 2003;60(5):862-870Zain R; Sun JS
- Published conference paper: NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS. 1997;16(7-9):1661-1662Zain R; Bollmark M; Stawinski J
- Published conference paper: COLLECTION OF CZECHOSLOVAK CHEMICAL COMMUNICATIONS. 1996;61:S68-S71Bollmark M; Zain R; Stawinski J
- Published conference paper: NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS. 1995;14(3-5):711-714STAWINSKI J; ZAIN R
- Show more
Grants
- Swedish Research Council1 January 2025 - 31 December 2028The signaling cascade that triggers the B cell mediated immune-response upon antigen binding to the B cell receptor is critically dependent on Bruton’s tyrosine kinase (BTK). The BCR signaling pathway remains critical for survival and proliferation of transformed B cells. The introduction of BTK inhibitors (BTKi) to interfere with this signaling pathway has revolutionized treatment of chronic lymphocytic leukemia (CLL). In CLL, BTKi treatment cause tumor cells to exit tissues and enter peripheral blood where they over time waste away.Long-term BTKi treatment is burdened by side effects and the development of treatment resistant CLL. Curiously, the cessation of BTKi treatment is not associated with disease progression. Instead, many patients remain in long-term sustained remission. This suggests that BTKi can induce changes to CLL cells or tumor microenvironment (TME) that persist long-term.The proposed project aims to:1. Perform temporal analysis of plasma biomarkers and CLL cells during treatment with 2nd generation BTKi.2. Disentangle direct and TME mediated effects of BTKi treatment on CLL using a combined BTKi resistance (BTK C481S) and CLL mouse model.3. Identify CLL-intrinsic and TME mediated factors contributing to long-term sustained remission after the withdrawal of BTKi treatment.Our hope is that this will lead to improved understanding of how BTK inhibitors work and how they can be used to provide each individual patient with the best possible treatment.
- Swedish Research Council1 January 2024 - 31 December 2027The research project focuses on precision medicinetherapeutic oligonucleotides (ONs). Our unique niche is to develop anti-gene ONs (A-GOs), which bind to the DNA duplex, where our strategy is world-leading. We found that A-GOs binding to the disease gene in tandem repeat-expansion disorders (TREDs), such as Huntington’s disease (HD) and Friedreich’s ataxia (FRDA), significantly modulates gene expression. The fact that A-GOs binding within the chromatin down-regulates the expression of Huntingtin in patient cells, is by all criteria a breakthrough. Also, our recent findings demonstrate that specifically designed A-GOs not only revert the gene silencing in FRDA but also block the repeat expansion in mammalian cells. In other words, for the first time we can target the root cause of these diseases, the repeat expansion itself. Moreover, our accumulated expertise in nucleic acid therapeutics for genetic diseases has an evident added-value to the development of additional gene-therapies, such as gene editing. We aim to move our precision medicine ONs closer to the clinics focusing on the following:Advance our A-GOs therapeutic concept for FRDA and HD by studying their effect in patient-derived cells, differentiated iPS cells, and in animal models with focus on disease prevention and treatment.Develop FRDA gene therapy based on an in-house minicircle technology.Study the mechanisms underlying repeat expansions in FRDA and HD and in the novel TRED named CANVAS.
- VINNOVA15 May 2022 - 14 May 2024
- VINNOVA15 June 2019 - 15 August 2021
- VINNOVA15 June 2018 - 15 June 2019
- Swedish Research Council1 January 2016 - 31 December 2016
Employments
- Research Group Leader, Department of Laboratory Medicine, Karolinska Institutet, 2015-
Degrees and Education
- Docent, Stockholms Universitet