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About me

Professor of Genomic Analysis

Research description

My research group is presented here.

Publications

Discovering viral genomes in human metagenomic data by predicting unknown protein families
Barrientos-somarribas M, Messina Dn, Pou C, Lysholm F, Bjerkner A, Allander T, et al
Scientific reports 2018;8(1):28-

2b-RAD genotyping for population genomic studies of Chagas disease vectors: Rhodnius ecuadoriensis in Ecuador
Hernandez-castro Le, Paterno M, Villacís Ag, Andersson B, Costales Ja, De Noia M, et al
PLoS neglected tropical diseases 2017;11(7):e0005710-

Parasite genomics-Time to think bigger
Talavera-lópez C, Andersson B
PLoS neglected tropical diseases 2017;11(4):e0005463-

Performing Skin Microbiome Research: A Method to the Madness
Kong Hh, Andersson B, Clavel T, Common Je, Jackson Sa, Olson Nd, et al
The Journal of investigative dermatology 2017;137(3):561-568

Prediction and Prevention of Parasitic Diseases Using a Landscape Genomics Framework
Schwabl P, Llewellyn Ms, Landguth El, Andersson B, Kitron U, Costales Ja, et al
Trends in parasitology 2017;33(4):264-275

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration
Elewa A, Wang H, Talavera-lopez C, Joven A, Brito G, Kumar A, et al
NATURE COMMUNICATIONS 2017;:2286-

A Comparative In Silico Study of the Antioxidant Defense Gene Repertoire of Distinct Lifestyle Trypanosomatid Species
Beltrame-botelho It, Talavera-lópez C, Andersson B, Grisard Ec, Stoco Ph
Evolutionary bioinformatics online 2016;12():263-275

The Transcriptome of Rhabdomyosarcoma Cells Infected with Cytolytic and Non-Cytolytic Variants of Coxsackievirus B2 Ohio-1
Sävneby A, Luthman J, Nordenskjöld F, Andersson B, Lindberg Am
PloS one 2016;11(10):e0164548-

Virome characterisation from Guthrie cards in children who later developed acute lymphoblastic leukaemia
Bogdanovic G, Pou C, Barrientos-somarribas M, Bjerkner A, Honkaniemi E, Allander T, et al
British journal of cancer 2016;115(8):1008-1014

Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains
Reis-cunha Jl, Rodrigues-luiz Gf, Valdivia Ho, Baptista Rp, Mendes Ta, De Morais Gl, et al
BMC genomics 2015;16():499-

Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates
Ankarklev J, Franzén O, Peirasmaki D, Jerlström-hultqvist J, Lebbad M, Andersson J, et al
BMC genomics 2015;16():697-

Genome of the avirulent human-infective trypanosome--Trypanosoma rangeli
Stoco Ph, Wagner G, Talavera-lopez C, Gerber A, Zaha A, Thompson Ce, et al
PLoS neglected tropical diseases 2014;8(9):e3176-

Intraclonal variations among Streptococcus pneumoniae isolates influence the likelihood of invasive disease in children
Browall S, Norman M, Tångrot J, Galanis I, Sjöström K, Dagerhamn J, et al
The Journal of infectious diseases 2014;209(3):377-88

Trypanosoma cruzi Clone Dm28c Draft Genome Sequence
Grisard Ec, Teixeira Sm, De Almeida Lg, Stoco Ph, Gerber Al, Talavera-lópez C, et al
Genome announcements 2014;2(1):-

PCR-induced transitions are the major source of error in cleaned ultra-deep pyrosequencing data
Brodin J, Mild M, Hedskog C, Sherwood E, Leitner T, Andersson B, et al
PloS one 2013;8(7):e70388-

The Norway spruce genome sequence and conifer genome evolution
Nystedt B, Street Nr, Wetterbom A, Zuccolo A, Lin Yc, Scofield Dg, et al
NATURE 2013;497(7451):579-84

Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq
Franzén O, Jerlström-hultqvist J, Einarsson E, Ankarklev J, Ferella M, Andersson B, et al
PLoS computational biology 2013;9(3):e1003000-

Characterization of the Viral Microbiome in Patients with Severe Lower Respiratory Tract Infections, Using Metagenomic Sequencing
Lysholm F, Wetterbom A, Lindau C, Darban H, Bjerkner A, Fahlander K, et al
PLOS ONE 2012;7(2):e30875-

Comparative genomic analysis of human infective Trypanosoma cruzi lineages with the bat-restricted subspecies T. cruzi marinkellei
Franzen O, Talavera-lopez C, Ochaya S, Butler Ce, Messenger La, Lewis Md, et al
BMC GENOMICS 2012;:531-

Multiple Mitochondrial Introgression Events and Heteroplasmy in Trypanosoma cruzi Revealed by Maxicircle MLST and Next Generation Sequencing
Messenger La, Llewellyn Ms, Bhattacharyya T, Franzen O, Lewis Md, Ramirez Jd, et al
PLOS NEGLECTED TROPICAL DISEASES 2012;6(4):e1584-

An efficient simulator of 454 data using configurable statistical models
Lysholm F, Andersson B, Persson B
BMC research notes 2011;4():449-

An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue
Sullivan Pf, Allander T, Lysholm F, Goh S, Persson B, Jacks A, et al
BMC MICROBIOLOGY 2011;:2-

FAAST: Flow-space Assisted Alignment Search Tool
Lysholm F, Andersson B, Persson B
BMC BIOINFORMATICS 2011;:293-

Shotgun Sequencing Analysis of Trypanosoma cruzi I Sylvio X10/1 and Comparison with T. cruzi VI CL Brener
Franzen O, Ochaya S, Sherwood E, Lewis Md, Llewellyn Ms, Miles Ma, et al
PLOS NEGLECTED TROPICAL DISEASES 2011;5(3):e984-

The Short Non-Coding Transcriptome of the Protozoan Parasite Trypanosoma cruzi
Franzen O, Arner E, Ferella M, Nilsson D, Respuela P, Carninci P, et al
PLOS NEGLECTED TROPICAL DISEASES 2011;5(8):e1283-

The Trypanosoma cruzi genome; conserved core genes and extremely variable surface molecule families
Andersson B
RESEARCH IN MICROBIOLOGY 2011;162(6):619-25

Analyses of an Expressed Sequence Tag Library from Taenia solium, Cysticerca
Lundstrom J, Salazar-anton F, Sherwood E, Andersson B, Lindh J
PLOS NEGLECTED TROPICAL DISEASES 2010;4(12):e919-

Classification of DNA sequences using Bloom filters
Stranneheim H, Kaller M, Allander T, Andersson B, Arvestad L, Lundeberg J
BIOINFORMATICS 2010;26(13):1595-600

Dynamics of HIV-1 Quasispecies during Antiviral Treatment Dissected Using Ultra-Deep Pyrosequencing
Hedskog C, Mild M, Jernberg J, Sherwood E, Bratt G, Leitner T, et al
PLOS ONE 2010;5(7):e11345-

Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate
Jerlstrom-hultqvist J, Franzen O, Ankarklev J, Xu Ff, Nohynkova E, Andersson Jo, et al
BMC GENOMICS 2010;:543-

Toll-Like Receptor 4 Promoter Polymorphisms: Common TLR4 Variants May Protect against Severe Urinary Tract Infection
Ragnarsdottir B, Jonsson K, Urbano A, Gronberg-hernandez J, Lutay N, Tammi M, et al
PLOS ONE 2010;5(5):e10734-

var gene transcription dynamics in Plasmodium falciparum patient isolates
Blomqvist K, Normark J, Nilsson D, Ribacke U, Orikiriza J, Trillkott P, et al
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 2010;170(2):74-83

Draft Genome Sequencing of Giardia intestinalis Assemblage B Isolate GS: Is Human Giardiasis Caused by Two Different Species?
Franzen O, Jerlstrom-hultqvist J, Castro E, Sherwood E, Ankarklev J, Reiner Ds, et al
PLOS PATHOGENS 2009;5(8):e1000560-

Genetic polymorphisms of glutathione S-transferase genes GSTP1, GSTM1, and GSTT1 and risk of esophageal and gastric cardia cancers
Zendehdel K, Bahmanyar S, Mccarthy S, Nyren O, Andersson B, Ye Wm
CANCER CAUSES & CONTROL 2009;20(10):2031-8

Molecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination
Tolf C, Gullberg M, Johansson Es, Tesh R, Andersson B, Lindberg Am
JOURNAL OF GENERAL VIROLOGY 2009;:843-53

Plasmodium falciparum Multidrug Resistance Protein 1 and Artemisinin-Based Combination Therapy in Africa
Dahlstrom S, Ferreira Pe, Veiga Mi, Sedighi N, Wiklund L, Martensson A, et al
JOURNAL OF INFECTIOUS DISEASES 2009;200(9):1456-64

Preclinical Assessment of the Treatment of Second-Stage African Trypanosomiasis with Cordycepin and Deoxycoformycin
Vodnala Sk, Ferella M, Lunden-miguel H, Betha E, Van Reet N, Amin Dn, et al
PLOS NEGLECTED TROPICAL DISEASES 2009;3(8):e495-

Diversity of the sarco/endoplasmic reticulum Ca2+-ATPase orthologue of Plasmodium falciparum (PfATP6)
Dahlstrom S, Veiga Mi, Ferreira P, Martensson A, Kaneko A, Andersson B, et al
INFECTION GENETICS AND EVOLUTION 2008;8(3):340-5

Farnesyl diphosphate synthase localizes to the cytoplasm of Trypanosoma cruzi and T-brucei
Ferella M, Li Zh, Andersson B, Docampo R
EXPERIMENTAL PARASITOLOGY 2008;119(2):308-12

Polymorphism of antimalaria drug metabolizing, nuclear receptor, and drug transport genes among malaria patients in Zanzibar, East Africa
Ferreira Pe, Veiga Mi, Cavaco I, Martins Jp, Andersson B, Mushin S, et al
THERAPEUTIC DRUG MONITORING 2008;30(1):10-5

Proteomics in Trypanosoma cruzi - localization of novel proteins to various organelles
Ferella M, Nilsson D, Darban H, Rodrigues C, Bontempi Ej, Docampo R, et al
PROTEOMICS 2008;8(13):2735-49

A Genetic Basis of Susceptibility to Acute Pyelonephritis
Lundstedt Ac, Mccarthy S, Gustafsson Mcu, Godaly G, Jodal U, Karpman D, et al
PLOS ONE 2007;2(9):e825-

Characterization of a Trypanosoma cruzi acetyltransferase: cellular location, activity and structure
Ochaya S, Respuela P, Simonsson M, Saraswathi A, Branche C, Lee J, et al
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 2007;152(2):123-31

Database of Trypanosoma cruzi repeated genes: 20000 additional gene variants
Arner E, Kindlund E, Nilsson D, Farzana F, Ferella M, Tammi Mt, et al
BMC GENOMICS 2007;:391-

GRAT - genome-scale rapid alignment tool
Kindlund E, Tammi Mt, Arner E, Nilsson D, Andersson B
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2007;86(1):87-92

Identification of a third human polyomavirus
Allander T, Andreasson K, Gupta S, Bjerkner A, Bogdanovic G, Persson Maa, et al
JOURNAL OF VIROLOGY 2007;81(8):4130-6

Inherited susceptibility to acute pyelonephritis: A family study of urinary tract infection
Lundstedt Ac, Leijonhufvud I, Ragnarsdottir B, Karpman D, Andersson B, Svanborg C
JOURNAL OF INFECTIOUS DISEASES 2007;195(8):1227-34

PfEMP1-DBL1 alpha amino acid motifs in severe disease states of Plasmodium falciparum malaria
Normark J, Nilsson D, Ribacke U, Winter G, Moll K, Wheelock Ce, et al
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 2007;104(40):15835-40

Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi
Obado So, Bot C, Nilsson D, Andersson B, Kelly Jm
GENOME BIOLOGY 2007;8(3):R37-

A solanesyl-diphosphate synthase localizes in glycosomes of Trypanosoma cruzi
Ferella M, Montalvetti A, Rohloff P, Miranda K, Fang Jm, Reina S, et al
JOURNAL OF BIOLOGICAL CHEMISTRY 2006;281(51):39339-48

Comparative karyotyping as a tool for genome structure analysis of Trypanosoma cruzi
Branche C, Ochaya S, Aslund L, Andersson B
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 2006;147(1):30-8

DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions
Arner E, Tammi Mt, Tran An, Kindlund E, Andersson B
BMC BIOINFORMATICS 2006;:155-

Molecular characterization of serine-, alanine-, and proline-rich proteins of Trypanosoma cruzi and their possible role in host cell infection
Baida Rcp, Santos Wrm, Carmo Ms, Yoshida N, Ferreira D, Ferreira At, et al
INFECTION AND IMMUNITY 2006;74(3):1537-46

Benzophenone-based farnesyltransferase inhibitors with high activity against Trypanosoma cruzi
Esteva Mi, Kettler K, Maidana C, Fichera L, Ruiz Am, Bontempi Ej, et al
JOURNAL OF MEDICINAL CHEMISTRY 2005;48(23):7186-91

Cloning of a human parvovirus by molecular screening of respiratory tract samples
Allander T, Tammi Mt, Eriksson M, Bjerkner A, Tiveljung-lindell A, Andersson B
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 2005;102(36):12891-6

Comparative genomics of trypanosomatid parasitic protozoa
El-sayed Nm, Myler Pj, Blandin G, Berriman M, Crabtree J, Aggarwal G, et al
SCIENCE 2005;309(5733):404-9

Complex HTR2C linkage disequilibrium and promoter associations with body mass index and serum leptin
Mccarthy S, Mottagui-tabar S, Mizuno Y, Sennblad B, Hoffstedt J, Arner P, et al
HUMAN GENETICS 2005;117(6):545-57

Laminin alpha 1 globular domains 4-5 induce fetal development but are not vital for embryonic basement membrane assembly
Scheele S, Falk M, Franzen A, Ellin F, Ferletta M, Lonai P, et al
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 2005;102(5):1502-6

MAOA haplotypes associated with thrombocyte-MAO activity
Jansson M, Mccarthy S, Sullivan Pf, Dickman P, Andersson B, Oreland L, et al
BMC GENETICS 2005;:46-

Messenger RNA processing sites in Trypanosoma brucei
Benz C, Nilsson D, Andersson B, Clayton C, Guilbride Dl
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 2005;143(2):125-34

Mutation screening of a haplotype block around the insulin degrading enzyme gene and association with Alzheimer's disease
Feuk L, Mccarthy S, Andersson B, Prince Ja, Brookes Aj
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS 2005;136B(1):69-71

Serotonin receptor 2C (HTR2C) and schizophrenia: Examination of possible medication and genetic influences on expression levels
Castensson A, Aberg K, Mccarthy S, Saetre P, Andersson B, Jazin E
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS 2005;134B(1):84-9

Strand asymmetry patterns in trypanosomatid parasites
Nilsson D, Andersson B
EXPERIMENTAL PARASITOLOGY 2005;109(3):143-9

Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T-cruzi telomeres
Kim D, Chiurillo Ma, El-sayed N, Jones K, Santos Mrm, Porcile Pe, et al
GENE 2005;:153-61

The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
El-sayed Nm, Myler Pj, Bartholomeu Dc, Nilsson D, Aggarwal G, Tran An, et al
SCIENCE 2005;309(5733):409-15

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Int Chicken Polymorphism Map Conso, Wong Gks, Liu B, Wang J, Zhang Y, Yang X, et al
NATURE 2004;432(7018):717-22

A graphical tool for parasite genome annotation
Nilsson D, Andersson B
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2004;73(1):55-60

Analysis of 5-hydroxytryptamine 2c receptor gene promoter variants as alcohol-dependence risk factors
Mottagui-tabar S, Mccarthy S, Reinemund J, Andersson B, Wahlestedt C, Heilig M
ALCOHOL AND ALCOHOLISM 2004;39(5):380-5

Gene synteny and evolution of genome architecture in trypanosomatids
Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, et al
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 2004;134(2):183-91

Identification and characterization of an interspersed repetitive DNA fragment in Plasmodium vivax with potential use for specific parasite detection
Carnevale S, Velasquez Jn, Del Portillo H, Labbe Jh, Cabrera Mg, Ferella M, et al
EXPERIMENTAL PARASITOLOGY 2004;108(3-4):81-8

Identification and characterization of serine proteinase inhibitors from Neospora caninum
Bruno S, Duschak Vg, Ledesma B, Ferella M, Andersson B, Guarnera Ea, et al
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 2004;136(1):101-7

ReDiT: Repeat Discrepancy Tagger - a shotgun assembly finishing aid
Tammi Mt, Arner E, Kindlund E, Andersson B
BIOINFORMATICS 2004;20(5):803-4

Correcting errors in shotgun sequences
Tammi Mt, Arner E, Kindlund E, Andersson B
NUCLEIC ACIDS RESEARCH 2003;31(15):4663-72

Strong conservation of the human NF2 locus based on sequence comparison in five species
Hansson Cm, Ali H, Bruder Ceg, Fransson I, Kluge S, Andersson B, et al
MAMMALIAN GENOME 2003;14(8):526-36

TRAP: Tandem Repeat Assembly Program produces improved shotgun assemblies of repetitive sequences
Tammi Mt, Arner E, Andersson B
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2003;70(1):47-59

Trypanothione synthetase locus in Trypanosoma cruzi CL Brener strain shows an extensive allelic divergence
Tran An, Andersson B, Pettersson U, Aslund L
ACTA TROPICA 2003;87(2):269-78

Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi
Bringaud F, Garcia-perez Jl, Heras Sr, Ghedin E, El-sayed Nm, Andersson B, et al
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 2002;124(1-2):73-8

Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs
Tammi Mt, Arner E, Britton T, Andersson B
BIOINFORMATICS 2002;18(3):379-88

Fine mapping of the constitutional translocation t(11;22)(q23;q11)
Tapia-paez I, O'brien Kp, Kost-alimova M, Sahlen S, Kedra D, Bruder Ceg, et al
HUMAN GENETICS 2000;106(5):506-16

Gene survey of the pathogenic protozoan Trypanosoma cruzi
Porcel Bm, Tran An, Tammi M, Nyarady Z, Rydaker M, Urmenyu Tp, et al
GENOME RESEARCH 2000;10(8):1103-7

Trypanosoma cruzi: A putative vacuolar ATP synthase subunit and a CAAX prenyl protease-encoding gene, as examples of gene identification in genome projects
Porcel Bm, Aslund L, Pettersson U, Andersson B
EXPERIMENTAL PARASITOLOGY 2000;95(3):176-86

A chromosome-specific dispersed gene family in Trypanosoma cruzi
Tran An, Andersson B, Pettersson U, Aslund L
MOLECULAR AND BIOCHEMICAL PARASITOLOGY 1999;100(2):229-34

The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia
Draptchinskaia N, Gustavsson P, Andersson B, Pettersson M, Willig Tn, Dianzani I, et al
NATURE GENETICS 1999;21(2):169-75

Complete sequence of a 93.4-kb contig from chromosome 3 of Trypanosoma cruzi containing a strand-switch region
Andersson B, Aslund L, Tammi M, Tran An, Hoheisel Jd, Pettersson U
GENOME RESEARCH 1998;8(8):809-16

The NIK protein kinase and C17orf1 genes: chromosomal mapping, gene structures and mutational screening in frontotemporal dementia and parkinsonism linked to chromosome 17
Aronsson Fc, Magnusson P, Andersson B, Karsten Sl, Shibasaki Y, Lendon Cl, et al
HUMAN GENETICS 1998;103(3):340-5

In situ hybridisation mapping of genomic clones for five human respiratory chain complex I genes
Dunbar Dr, Shibasaki Y, Dobbie L, Andersson B, Brookes Aj
CYTOGENETICS AND CELL GENETICS 1997;78(1):21-4

Large-scale concatenation cDNA sequencing
Yu W, Andersson B, Worley Kc, Muzny Dm, Ding Y, Liu W, et al
GENOME RESEARCH 1997;7(4):353-8

Simultaneous shotgun sequencing of multiple cDNA clones
Andersson B, Lu J, Shen Y, Wentland Ma, Gibbs Ra
DNA SEQUENCE 1997;7(2):63-70

The Trypanosoma cruzi genome initiative
Trypanosoma Cruzi Genome Consortium, Zingales B, Rondinelli E, Degrave W, Dasilveira Jf, Levin M, et al
PARASITOLOGY TODAY 1997;13(1):16-22

A ''double adaptor'' method for improved shotgun library construction
Andersson B, Wentland Ma, Ricafrente Jy, Liu W, Gibbs Ra
ANALYTICAL BIOCHEMISTRY 1996;236(1):107-13

Method for 96-well M13 DNA template preparations for large-scale sequencing
Andersson B, Lu J, Edwards Ke, Muzny Dm, Gibbs Ra
BIOTECHNIQUES 1996;20(6):1022-7

COMPLETE SEQUENCE OF A 38.4-KB HUMAN COSMID INSERT CONTAINING THE POLYMORPHIC MARKER DXS455 FROM XQ28
Andersson B, Lu F, Muzny Dm, Warren St, Gibbs Ra
DNA SEQUENCE 1995;5(4):219-23

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