András Simon | Karolinska Institutet

Articles

Article: CELL GENOMICS. 2025;5(2):100761
Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration
Brown T; Mishra K; Elewa A; Iarovenko S; Subramanian E; Araus AJ; Petzold A; Fromm B; Friedlander MR; Rikk L; Suzuki M; Suzuki K-IT; Hayashi T; Toyoda A; Oliveira CR; Osipova E; Leigh ND; Yun MH; Simon A
Article: STEM CELL RESEARCH & THERAPY. 2024;15(1):141
Macrophages modulate fibrosis during newt lens regeneration
Tsissios G; Sallese A; Perez-Estrada JR; Tangeman JA; Chen W; Smucker B; Ratvasky SC; Grajales-Esquivel E; Martinez A; Visser KJ; Araus AJ; Wang H; Simon A; Yun MH; Del Rio-Tsonis K
Article: LIFE SCIENCE ALLIANCE. 2023;6(8):e202301979
Evaluation of genetic demultiplexing of single-cell sequencing data from model species
Cardiello JF; Araus AJ; Giatrellis S; Helsens C; Simon A; Leigh N
Article: DEVELOPMENTAL CELL. 2023;58(6):450-460.e6
A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration
Subramanian E; Elewa A; Brito G; Kumar A; Segerstolpe A; Karampelias C; Bjorklund A; Sandberg R; Echeverri K; Lui W-O; Andersson O; Simon A
Article: NATURE COMMUNICATIONS. 2022;13(1):6949
Altered developmental programs and oriented cell divisions lead to bulky bones during salamander limb regeneration
Kaucka M; Araus AJ; Tesarova M; Currie JD; Bostrom J; Kavkova M; Petersen J; Yao Z; Bouchnita A; Hellander A; Zikmund T; Elewa A; Newton PT; Fei J-F; Chagin AS; Fried K; Tanaka EM; Kaiser J; Simon A; Adameyko I
Article: SCIENCE. 2022;377(6610):eabp9186
Cell-type profiling in salamanders identifies innovations in vertebrate forebrain evolution
Woych J; Gurrola AO; Deryckere A; Jaeger ECB; Gumnit E; Merello G; Gu J; Araus AJ; Leigh ND; Yun M; Simon A; Tosches MA
Article: NATURE CELL BIOLOGY. 2022;24(5):645-658
Epicardium-derived cells organize through tight junctions to replenish cardiac muscle in salamanders
Eroglu E; Yen CYT; Tsoi Y-L; Witman N; Elewa A; Araus AJ; Wang H; Szattler T; Umeano CH; Sohlmer J; Goedel A; Simon A; Chien KR
Article: NATURE COMMUNICATIONS. 2022;13(1):1141
Tig1 regulates proximo-distal identity during salamander limb regeneration
Oliveira CR; Knapp D; Elewa A; Gerber T; Malagon SGG; Gates PB; Walters HE; Petzold A; Arce H; Cordoba RC; Subramanian E; Chara O; Tanaka EM; Simon A; Yun MH
Article: NATURE COMMUNICATIONS. 2021;12(1):4857
Locomotion dependent neuron-glia interactions control neurogenesis and regeneration in the adult zebrafish spinal cord
Chang W; Pedroni A; Bertuzzi M; Kizil C; Simon A; Ampatzis K
Article: CELLULAR AND MOLECULAR LIFE SCIENCES. 2021;78(16):6033-6049
Nerve-associated Schwann cell precursors contribute extracutaneous melanocytes to the heart, inner ear, supraorbital locations and brain meninges
Kaucka M; Szarowska B; Kavkova M; Kastriti ME; Kameneva P; Schmidt I; Peskova L; Joven Araus A; Simon A; Kaiser J; Adameyko I
Article: JOURNAL OF NEUROSCIENCE METHODS. 2021;348:109002
CUBIC-f: An optimized clearing method for cell tracing and evaluation of neurite density in the salamander brain
Pinheiro T; Mayor I; Edwards S; Joven A; Kantzer CG; Kirkham M; Simon A
Article: ELIFE. 2020;9:e55212
Secondary ossification center induces and protects growth plate structure
Xie M; Gol'din P; Herdina AN; Estefa J; Medvedeva EV; Li L; Newton PT; Kotova S; Shavkuta B; Saxena A; Shumate LT; Metscher BD; Grossschmidt K; Nishimori S; Akovantseva A; Usanova AP; Kurenkova AD; Kumar A; Arregui IL; Tafforeau P; Fried K; Carlstrom M; Simon A; Gasser C; Kronenberg HM; Bastepe M; Cooper KL; Timashev P; Sanchez S; Adameyko I; Eriksson A; Chagin ASAll authors
Article: DEVELOPMENT. 2019;146(14):dev167700
Model systems for regeneration: salamanders
Joven A; Elewa A; Simon A
Article: SCIENTIFIC REPORTS. 2018;8(1):14145
A quantitative analysis of 3D-cell distribution in regenerating muscle-skeletal system with synchrotron X-ray computed microtomography
Tesarova M; Mancini L; Simon A; Adameyko I; Kaucka M; Elewa A; Lanzafame G; Zhang Y; Kalasova D; Szarowska B; Zikmund T; Novotna M; Kaiser J
Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2018;499(2):136-142
Reprint of: A chemical screen identifies trifluoperazine as an inhibitor of glioblastoma growth
Pinheiro T; Otrocka M; Seashore-Ludlow B; Rraklli V; Holmberg J; Forsberg-Nilsson K; Simon A; Kirkham M
Article: DEVELOPMENT. 2018;145(1):dev160051
Cellular basis of brain maturation and acquisition of complex behaviors in salamanders
Joven A; Wang H; Pinheiro T; Hameed LS; Belnoue L; Simon A
Article: NATURE COMMUNICATIONS. 2017;8(1):2286
Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration
Elewa A; Wang H; Talavera-Lopez C; Joven A; Brito G; Kumar A; Hameed LS; Penrad-Mobayed M; Yao Z; Zamani N; Abbas Y; Abdullayev I; Sandberg R; Grabherr M; Andersson B; Simon A
Article: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2017;494(3-4):477-483
A chemical screen identifies trifluoperazine as an inhibitor of glioblastoma growth
Pinheiro T; Otrocka M; Seashore-Ludlow B; Rraklli V; Holmberg J; Forsberg-Nilsson K; Simon A; Kirkham M
Article: DEVELOPMENTAL CELL. 2017;40(6):608-617.e6
Serum Proteases Potentiate BMP-Induced Cell Cycle Re-entry of Dedifferentiating Muscle Cells during Newt Limb Regeneration.
Wagner I; Wang H; Weissert PM; Straube WL; Shevchenko A; Gentzel M; Brito G; Tazaki A; Oliveira C; Sugiura T; Shevchenko A; Simon A; Drechsel DN; Tanaka EM
Article: SCIENTIFIC REPORTS. 2016;6:26448
Dopamine Receptor Antagonists Enhance Proliferation and Neurogenesis of Midbrain Lmx1a-expressing Progenitors
Hedlund E; Belnoue L; Theofilopoulos S; Salto C; Bye C; Parish C; Deng Q; Kadkhodaei B; Ericson J; Arenas E; Perlmann T; Simon A
Article: NATURE. 2016;531(7593):237-240
MARCKS-like protein is an initiating molecule in axolotl appendage regeneration
Sugiura T; Wang H; Barsacchi R; Simon A; Tanaka EM
Article: ELIFE. 2015;4:e08422
Environmental changes in oxygen tension reveal ROS-dependent neurogenesis and regeneration in the adult newt brain
Hameed LS; Berg DA; Belnoue L; Jensen LD; Cao Y; Simon A
Article: NATURE COMMUNICATIONS. 2015;6:7916
Turning terminally differentiated skeletal muscle cells into regenerative progenitors
Wang H; Loof S; Borg P; Nader GA; Blau HM; Simon A
Article: METHODS IN MOLECULAR BIOLOGY. 2015;1290:197-204
Isolation and culture of neurospheres from the adult newt brain.
Hameed LAS; Simon A
Article: METHODS IN MOLECULAR BIOLOGY. 2015;1290:47-70
Husbandry of Spanish ribbed newts (Pleurodeles waltl).
Joven A; Kirkham M; Simon A
Article: PLOS ONE. 2015;10(3):e0120176
Sublethal Caspase Activation Promotes Generation of Cardiomyocytes from Embryonic Stem Cells
Bulatovic I; Ibarra C; Osterholm C; Wang H; Beltran-Rodriguez A; Varas-Godoy M; Mansson-Broberg A; Uhlen P; Simon A; Grinnemo K-H
Article: STEM CELL REPORTS. 2014;2(4):507-519
Progenitor Cell Dynamics in the Newt Telencephalon during Homeostasis and Neuronal Regeneration
Kirkham M; Hameed LS; Berg DA; Wang H; Simon A
Article: CELL STEM CELL. 2014;14(2):174-187
Fundamental Differences in Dedifferentiation and Stem Cell Recruitment during Skeletal Muscle Regeneration in Two Salamander Species
Sandoval-Guzman T; Wang H; Khattak S; Schuez M; Roensch K; Nacu E; Tazaki A; Joven A; Tanaka EM; Simon A
Article: EXPERIMENTAL CELL RESEARCH. 2013;319(8):1187-1197
A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens
Abdullayev I; Kirkham M; Bjorklund AK; Simon A; Sandberg R
Article: WILEY INTERDISCIPLINARY REVIEWS: DEVELOPMENTAL BIOLOGY. 2013;2(2):291-300
Limb regeneration
Simon A; Tanaka EM
Article: NEUROSCIENCE LETTERS. 2011;497(1):11-16
Microglia activation during neuroregeneration in the adult vertebrate brain
Kirkham M; Berg DA; Simon A
Article: CELL STEM CELL. 2011;8(4):426-433
Dopamine Controls Neurogenesis in the Adult Salamander Midbrain in Homeostasis and during Regeneration of Dopamine Neurons
Berg DA; Kirkham M; Wang H; Frisen J; Simon A
Journal article: DEVELOPMENT. 2011;138(1):180
Efficient regeneration by activation of neurogenesis in homeostatically quiescent regions of the adult vertebrate brain
Berg DA; Kirkham M; Beljajeva A; Knapp D; Habermann B; Ryge J; Tanaka EM; Simon A
Article: DEVELOPMENT. 2010;137(24):4127-4134
Efficient regeneration by activation of neurogenesis in homeostatically quiescent regions of the adult vertebrate brain
Berg DA; Kirkham M; Beljajeva A; Knapp D; Habermann B; Ryge J; Tanaka EM; Simon A
Article: JOURNAL OF CELLULAR PHYSIOLOGY. 2010;223(2):376-383
Myogenic Skeletal Muscle Satellite Cells Communicate by Tunnelling Nanotubes
Tavi P; Korhonen T; Hanninen SL; Bruton JD; Loof S; Simon A; Westerblad H
Article: FASEB JOURNAL. 2010;24(3):750-756
Plasticity and recovery of skeletal muscle satellite cells during limb regeneration
Morrison JI; Borg P; Simon A
Article: DEVELOPMENT. 2007;134(15):2881-2887
Midbrain dopaminergic neurogenesis and behavioural recovery in a salamander lesion-induced regeneration model
Parish CL; Beljajeva A; Arenas E; Simon A
Article: CELL CYCLE. 2007;6(9):1096-1101
Plasticity of mammalian myotubes upon stimulation with a thrombin-activated serum factor
Loof S; Straube WL; Drechsel D; Tanaka EM; Simon A
Article: DEVELOPMENTAL DYNAMICS. 2007;236(2):481-488
Targeted gene delivery to differentiated skeletal muscle:: A tool to study dedifferentiation
Morrison JI; Loof S; He P; Alestrom P; Collas P; Simon A
Article: JOURNAL OF CELL BIOLOGY. 2006;172(3):433-440
Salamander limb regeneration involves the activation of a multipotent skeletal muscle satellite cell population
Morrison JI; Lööf S; He PP; Simon A
Article: PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 2004;359(1445):765-776
A critical role for thrombin in vertebrate lens regeneration
Imokawa Y; Simon A; Brockes JP
Article: EXPERIMENTAL CELL RESEARCH. 2002;281(1):101-106
Thrombin activation of S-Phase reentry by cultured pigmented epithelial cells of adult newt iris
Simon A; Brockes JP
Article: CURRENT BIOLOGY. 2001;11(11):855-858
Mammalian postmitotic nuclei reenter the cell cycle after serum stimulation in newt/mouse hybrid myotubes
Velloso CP; Simon A; Brockes JP
Article: NATURE GENETICS. 1999;22(2):188-191
Mutations in the gene encoding 11-cis retinol dehydrogenase cause delayed dark adaptation and fundus albipunctatus
Yamamoto H; Simon A; Eriksson U; Harris E; Berson EL; Dryja TP
Article: JOURNAL OF CELL SCIENCE. 1999;112(4):549-558
Intracellular localization and membrane topology of 11-cis retinol dehydrogenase in the retinal pigment epithelium suggest a compartmentalized synthesis of 11-cis retinaldehyde
Simon A; Romert A; Gustafson AL; McCaffery JM; Eriksson U
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1998;95(8):4404-4409
The identification of a 9-cis retinol dehydrogenase in the mouse embryo reveals a pathway for synthesis of 9-cis retinoic acid
Romert A; Tuvendal P; Simon A; Dencker L; Eriksson U
Article: GENOMICS. 1996;36(3):424-430
Primary structure of human 11-cis retinol dehydrogenase and organization and chromosomal localization of the corresponding gene
Simon A; Lagercrantz J; BajalicaLagercrantz S; Eriksson U
Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 1995;270(3):1107-1112
THE RETINAL-PIGMENT EPITHELIAL-SPECIFIC 11-CIS RETINOL DEHYDROGENASE BELONGS TO THE FAMILY OF SHORT-CHAIN ALCOHOL DEHYDROGENASES
SIMON A; HELLMAN U; WERNSTEDT C; ERIKSSON U
Journal article: NEUROSCIENCE. 1994;62(3):899-918
LOCALIZATION OF CELLULAR RETINOID-BINDING PROTEINS SUGGESTS SPECIFIC ROLES FOR RETINOIDS IN THE ADULT CENTRAL-NERVOUS-SYSTEM
ZETTERSTROM RH; SIMON A; GIACOBINI MMJ; ERIKSSON U; OLSON L
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All other publications

Preprint: BIORXIV. 2024
Myogenic dedifferentiation involves a p53-dependent reorganization of PLK4 localization during centrosome regeneration
Subramanian E; Brito G; Kumar A; Kirkham M; Simon A
Editorial comment: DEVELOPMENTAL CELL. 2023;58(24):2819-2821
Understanding the microenvironment and how this controls cell fate
Fuchs E; Sahai E; Weeraratna AT; Deneen B; Wong CC-L; Simon A
Preprint: RES SQ. 2023;RES SQ
Macrophages modulate fibrosis during newt lens regeneration.
Tsissios G; Sallese A; Perez-Estrada JR; Tangeman JA; Chen W; Smucker B; Ratvasky SC; Grajales-Esquive EL; Martinez A; Visser KJ; Araus AJ; Wang H; Simon A; Yun MH; Rio-Tsonis KD
Preprint: BIORXIV. 2023;BIORXIV
Macrophages modulate fibrosis during newt lens regeneration.
Tsissios G; Sallese A; Perez-Estrada JR; Tangeman JA; Chen W; Smucker B; Ratvasky SC; Grajales-Esquivel E; Martinez A; Visser KJ; Araus AJ; Wang H; Simon A; Yun MH; Rio-Tsonis KD
Preprint: BIORXIV. 2022
Sequencing and chromosome-scale assembly of the giant Pleurodeles waltl genome
Brown T; Elewa A; Iarovenko S; Subramanian E; Araus AJ; Petzold A; Suzuki M; Suzuki K-IT; Hayashi T; Toyoda A; Oliveira C; Osipova E; Leigh ND; Simon A; Yun MH
Preprint: BIORXIV. 2022
Accurate genotype-based demultiplexing of single cell RNA sequencing samples from non-human animals
Cardiello J; Araus AJ; Giatrellis S; Simon A; Leigh N
Corrigendum: NATURE COMMUNICATIONS. 2022;13(1):4507
Publisher Correction: Tig1 regulates proximo-distal identity during salamander limb regeneration.
Oliveira CR; Knapp D; Elewa A; Gerber T; Gonzalez Malagon SG; Gates PB; Walters HE; Petzold A; Arce H; Cordoba RC; Subramanian E; Chara O; Tanaka EM; Simon A; Yun MH
Letter: DEVELOPMENTAL DYNAMICS. 2022;251(6):911-912
Standardized gene and genetic nomenclature for the newt Pleurodeles waltl
Yun MH; Hayashi T; Simon A
Preprint: BIORXIV. 2022
Cell type profiling in salamanders identifies innovations in vertebrate forebrain evolution
Woych J; Gurrola AO; Deryckere A; Jaeger ECB; Gumnit E; Merello G; Gu J; Araus AJ; Leigh ND; Yun M; Simon A; Tosches MA
Preprint: BIORXIV. 2022
Telomerase-independent maintenance of telomere length in a vertebrate
Yu Q; Gates PB; Rogers S; Mikicic I; Elewa A; Salomon F; Lachnit M; Caldarelli A; Flores-Rodriguez N; Cesare AJ; Simon A; Yun MH
Preprint: BIORXIV. 2021
Tig1 regulates proximo-distal identity during salamander limb regeneration
Oliveira CR; Knapp D; Elewa A; Gerber T; Malagon SGG; Gates PB; Walters HE; Petzold A; Arce H; Cordoba RC; Subramanian E; Chara O; Tanaka EM; Simon A; Yun MH
Review: TRENDS IN NEUROSCIENCES. 2020;43(11):916-930
Walking with Salamanders: From Molecules to Biorobotics
Ryczko D; Simon A; Ijspeert AJ
Corrigendum: SCIENTIFIC REPORTS. 2020;10(1):2276
A quantitative analysis of 3D-cell distribution in regenerative muscle-skeletal system with synchrotron X-ray computed microtomography (vol 8, 14145, 2019)
Tesarova M; Mancini L; Simon A; Adameyko I; Kaucka M; Elewa A; Lanzafame G; Zhang Y; Kalasova D; Szarowska B; Zikmund T; Novotna M; Kaiser J
Preprint: BIORXIV. 2019
Secondary ossification center induces and protects growth plate structure
Xie M; Gol’din P; Herdina AN; Estefa J; Medvedeva EV; Li L; Newton PT; Kotova S; Shavkuta B; Saxena A; Shumate LT; Metscher B; Großschmidt K; Nishimori S; Akovantseva A; Usanova AP; Kurenkova AD; Kumar A; Arregui IL; Tafforeau P; Fried K; Carlström M; Simon A; Gasser C; Kronenberg HM; Bastepe M; Cooper KL; Timashev P; Sanchez S; Adameyko I; Eriksson A; Chagin ASAll authors
Review: PROGRESS IN NEUROBIOLOGY. 2018;170:81-98
Homeostatic and regenerative neurogenesis in salamanders
Joven A; Simon A
Editorial comment: EXPERIMENTAL CELL RESEARCH. 2018;370(2):189
Changing master regulator without reprogramming
Lendahl U; Simon A
Other: DEVELOPMENTAL BIOLOGY. 2018;433(2):115-117
Dr. Panagiotis (Takis) Tsonis: A man for all seasons In Memoriam
Simon A; Voss SR; Alvarado AS
Review: CURRENT OPINION IN GENETICS & DEVELOPMENT. 2016;40:108-112
Skeletal muscle dedifferentiation during salamander limb regeneration.
Wang H; Simon A
Editorial comment: NATURE. 2013;500(7460):32-33
REGENERATIVE BIOLOGY On with their heads
Simon A
Review: DEVELOPMENT. 2013;140(12):2548-2561
Neurotransmitter-mediated control of neurogenesis in the adult vertebrate brain
Berg DA; Belnoue L; Song H; Simon A
Review: SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. 2009;20(6):691-696
Not lost in translation Sensing the loss and filling the gap during regeneration
Simon A; Berg D; Kirkham M
Editorial comment: CELLULAR AND MOLECULAR LIFE SCIENCES. 2008;65(1):3-7
Regeneration and tissue repair: themes and variations
Galliot B; Tanaka E; Simon A
Editorial comment: CELL. 2007;128(5):825-826
From stem cell to progenitor and back again
Simon A; Frisen J
Conference publication: MECHANISMS OF DEVELOPMENT. 2005;122:S133
Neurogenesis and functional recovery in Parkinsonian newts
Parish CL; Beljajeva A; Arenas E; Simon A
Editorial comment: SCANDINAVIAN JOURNAL OF LABORATORY ANIMAL SCIENCE. 2001;28(4):241-242
Meet a research group: Andras Simon, CMB, KI
Simon A
Review: RECOMBINANT PROTEIN EXPRESSION: PROKARYOTIC HOSTS AND CELL-FREE SYSTEMS. 2000;316:344-358
Analyzing membrane topology of 11-cis-retinol dehydrogenase
Simon A; Romert A; Eriksson U
Doctoral thesis: 1998
The molecular biology of retinoid metabolism : identification of an 11-cis retinol dehydrogenase in the retinal pigment epithelium
Simon A
Conference publication: MOLECULAR BIOLOGY OF THE CELL. 1996;7:3461
Cloning and characterization of two membrane proteins participating in retinoid transport and metabolism in the eye
Simon A; Berrez JM; Gustafson AL; Eriksson U
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