Publications- Jan Albert Group

Selected from 249 original papers in peer-reviewed journals, 38 reviews and 17 other publications.


Original papers

Evolution, geographic spreading, and demographic distribution of Enterovirus D68.
Hodcroft EB, Dyrdak R, Andrés C, Egli A, Reist J, García Martínez de Artola D, Alcoba-Flórez J, Niesters HGM, Antón A, Poelman R, Reynders M, Wollants E, Neher RA, Albert J
PLoS Pathog 2022 May;18(5):e1010515

Neutralisation sensitivity of the SARS-CoV-2 omicron (B.1.1.529) variant: a cross-sectional study.
Sheward DJ, Kim C, Ehling RA, Pankow A, Castro Dopico X, Dyrdak R, Martin DP, Reddy ST, Dillner J, Karlsson Hedestam GB, Albert J, Murrell B
Lancet Infect Dis 2022 Jun;22(6):813-820

Seropositivity in blood donors and pregnant women during the first year of SARS-CoV-2 transmission in Stockholm, Sweden.
Castro Dopico X, Muschiol S, Christian M, Hanke L, Sheward DJ, Grinberg NF, Rorbach J, Bogdanovic G, Mcinerney GM, Allander T, Wallace C, Murrell B, Albert J, Karlsson Hedestam GB
J Intern Med 2021 09;290(3):666-676

Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020.
Dyrdak R, Hodcroft EB, Wahlund M, Neher RA, Albert J
J Clin Virol 2021 03;136():104754

Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention.
Zhang Y, Leitner T, Albert J, Britton T
PLoS Comput Biol 2020 09;16(9):e1008122

Potential impact of seasonal forcing on a SARS-CoV-2 pandemic.
Neher RA, Dyrdak R, Druelle V, Hodcroft EB, Albert J
Swiss Med Wkly 2020 03;150():w20224

Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing.
Dyrdak R, Mastafa M, Hodcroft EB, Neher RA, Albert J
Virus Evol 2019 Jan;5(1):vez007

Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers.
Giardina F, Romero-Severson EO, Axelsson M, Svedhem V, Leitner T, Britton T, Albert J
Int J Epidemiol 2019 12;48(6):1795-1803

Challenges in modelling the proportion of undiagnosed HIV infections in Sweden.
Andersson E, Nakagawa F, van Sighem A, Axelsson M, Phillips AN, Sönnerborg A, Albert J
Euro Surveill 2019 Apr;24(14):

Increase in transmitted drug resistance in migrants from sub-Saharan Africa diagnosed with HIV-1 in Sweden.
Andersson E, Nordquist A, Esbjörnsson J, Flamholc L, Gisslén M, Hejdeman B, Marrone G, Norrgren H, Svedhem V, Wendahl S, Albert J, Sönnerborg A
AIDS 2018 04;32(7):877-884

Estimating time of HIV-1 infection from next-generation sequence diversity.
Puller V, Neher R, Albert J
PLoS Comput Biol 2017 Oct;13(10):e1005775

In vivo mutation rates and the landscape of fitness costs of HIV-1.
Zanini F, Puller V, Brodin J, Albert J, Neher RA
Virus Evol 2017 Jan;3(1):vex003

Outbreak of enterovirus D68 of the new B3 lineage in Stockholm, Sweden, August to September 2016.
Dyrdak R, Grabbe M, Hammas B, Ekwall J, Hansson KE, Luthander J, Naucler P, Reinius H, Rotzén-Östlund M, Albert J
Euro Surveill 2016 Nov;21(46):

Establishment and stability of the latent HIV-1 DNA reservoir.
Brodin J, Zanini F, Thebo L, Lanz C, Bratt G, Neher RA, Albert J
Elife 2016 11;5():

HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries.
Esbjörnsson J, Mild M, Audelin A, Fonager J, Skar H, Bruun Jørgensen L, Liitsola K, Björkman P, Bratt G, Gisslén M, Sönnerborg A, Nielsen C, , Medstrand P, Albert J
Virus Evol 2016 Jan;2(1):vew010

 

Review articles and other publications

[Precision diagnostics in clinical microbiology].
G Giske C, Allander T, Fröding I, Ininbergs K, Mölling P, Engstrand L, Albert J
Lakartidningen 2021 10;118():

Contagiousness in treated HIV-1 infection.
Eriksen J, Albert J, Axelsson M, Berglund T, Brännström J, Gaines H, Gisslén M, Gröön P, Hagstam P, Navér L, Pettersson K, Stenkvist J, Sönnerborg A, Tegnell A
Infect Dis (Lond) 2021 Jan;53(1):1-8

Antiretroviral treatment for HIV infection: Swedish recommendations 2019.
Eriksen J, Carlander C, Albert J, Flamholc L, Gisslén M, Navér L, Svedhem V, Yilmaz A, Sönnerborg A
Infect Dis (Lond) 2020 05;52(5):295-329

Utredning av den initiala smittspridningen av SARS-CoV-2 till och inom Sverige. Underlagsrapport till Coronakommissionen.
Dyrdak R, Albert J.