Evolution och epidemiologi för HIV och enterovirus – Jan Albert grupp

Publikationer

Utvalda publikationer

• Article: NATURE COMMUNICATIONS. 2023;14(1):2164

  Delayed generation of functional virus-specific circulating T follicular helper cells correlates with severe COVID-19.

  Yu M; Charles A; Cagigi A; Christ W; Österberg B; Falck-Jones S; Azizmohammadi L; Åhlberg E; Falck-Jones R; Svensson J; Nie M; Warnqvist A; Hellgren F; Lenart K; Arcoverde Cerveira R; Ols S; Lindgren G; Lin A; Maecker H; Bell M; Johansson N; Albert J; Sundling C; Czarnewski P; Klingström J; Färnert A; Loré K; Smed-Sörensen A
• Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(12):e2220320120

  Functional SARS-CoV-2 cross-reactive CD4+ T cells established in early childhood decline with age.

  Humbert M; Olofsson A; Wullimann D; Niessl J; Hodcroft EB; Cai C; Gao Y; Sohlberg E; Dyrdak R; Mikaeloff F; Neogi U; Albert J; Malmberg K-J; Lund-Johansen F; Aleman S; Björkhem-Bergman L; Jenmalm MC; Ljunggren H-G; Buggert M; Karlsson AC
• Article: ELIFE. 2023;12:e77345

  Human influenza virus infection elicits distinct patterns of monocyte and dendritic cell mobilization in blood and the nasopharynx.

  Vangeti S; Falck-Jones S; Yu M; Österberg B; Liu S; Asghar M; Sondén K; Paterson C; Whitley P; Albert J; Johansson N; Färnert A; Smed-Sörensen A
• Review: LANCET MICROBE. 2023;4(2):e102-e112

  Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis.

  Baxter J; Langhorne S; Shi T; Tully DC; Villabona-Arenas CJ; Hué S; Albert J; Leigh Brown A; Atkins KE
• Letter: LANCET INFECTIOUS DISEASES. 2022;22(11):1538-1540

  Omicron sublineage BA.2.75.2 exhibits extensive escape from neutralising antibodies.

  Sheward DJ; Kim C; Fischbach J; Sato K; Muschiol S; Ehling RA; Björkström NK; Karlsson Hedestam GB; Reddy ST; Albert J; Peacock TP; Murrell B
• Letter: LANCET INFECTIOUS DISEASES. 2022;22(10):1421-1422

  Evasion of neutralising antibodies by omicron sublineage BA.2.75.

  Sheward DJ; Kim C; Fischbach J; Muschiol S; Ehling RA; Björkström NK; Karlsson Hedestam GB; Reddy ST; Albert J; Peacock TP; Murrell B
• Article: PLOS COMPUTATIONAL BIOLOGY. 2022;18(8):e1009741

  Combining biomarker and virus phylogenetic models improves HIV-1 epidemiological source identification.

  Lundgren E; Romero-Severson E; Albert J; Leitner T
• Article: LANCET INFECTIOUS DISEASES. 2022;22(6):813-820

  Neutralisation sensitivity of the SARS-CoV-2 omicron (B.1.1.529) variant: a cross-sectional study.

  Sheward DJ; Kim C; Ehling RA; Pankow A; Castro Dopico X; Dyrdak R; Martin DP; Reddy ST; Dillner J; Karlsson Hedestam GB; Albert J; Murrell B
• Article: PLOS PATHOGENS. 2022;18(5):e1010515

  Evolution, geographic spreading, and demographic distribution of Enterovirus D68.

  Hodcroft EB; Dyrdak R; Andrés C; Egli A; Reist J; García Martínez de Artola D; Alcoba-Flórez J; Niesters HGM; Antón A; Poelman R; Reynders M; Wollants E; Neher RA; Albert J
• Article: VIRUS EVOLUTION. 2022;8(1):veac022

  Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load.

  Zhao L; Wymant C; Blanquart F; Golubchik T; Gall A; Bakker M; Bezemer D; Hall M; Ong SH; Albert J; Bannert N; Fellay J; Grabowski MK; Gunsenheimer-Bartmeyer B; Günthard HF; Kivelä P; Kouyos RD; Laeyendecker O; Meyer L; Porter K; van Sighem A; van der Valk M; Berkhout B; Kellam P; Cornelissen M; Reiss P; Fraser C; Ferretti L
• Article: SCIENCE. 2022;375(6580):540-545

  A highly virulent variant of HIV-1 circulating in the Netherlands.

  Wymant C; Bezemer D; Blanquart F; Ferretti L; Gall A; Hall M; Golubchik T; Bakker M; Ong SH; Zhao L; Bonsall D; de Cesare M; MacIntyre-Cockett G; Abeler-Dörner L; Albert J; Bannert N; Fellay J; Grabowski MK; Gunsenheimer-Bartmeyer B; Günthard HF; Kivelä P; Kouyos RD; Laeyendecker O; Meyer L; Porter K; Ristola M; van Sighem A; Berkhout B; Kellam P; Cornelissen M; Reiss P; Fraser C; Netherlands ATHENA HIV Observational Cohort†; BEEHIVE Collaboration†
• Article: CLINICAL & TRANSLATIONAL IMMUNOLOGY. 2022;11(3):e1379

  Probabilistic classification of anti-SARS-CoV-2 antibody responses improves seroprevalence estimates.

  Castro Dopico X; Muschiol S; Grinberg NF; Aleman S; Sheward DJ; Hanke L; Ahl M; Vikström L; Forsell M; Coquet JM; McInerney G; Dillner J; Bogdanovic G; Murrell B; Albert J; Wallace C; Karlsson Hedestam GB
• Article: JOURNAL OF INTERNAL MEDICINE. 2021;290(3):666-676

  Seropositivity in blood donors and pregnant women during the first year of SARS-CoV-2 transmission in Stockholm, Sweden.

  Castro Dopico X; Muschiol S; Christian M; Hanke L; Sheward DJ; Grinberg NF; Rorbach J; Bogdanovic G; Mcinerney GM; Allander T; Wallace C; Murrell B; Albert J; Karlsson Hedestam GB
• Article: JOURNAL OF CLINICAL VIROLOGY. 2021;136:104754

  Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020.

  Dyrdak R; Hodcroft EB; Wahlund M; Neher RA; Albert J
• Article: PLOS COMPUTATIONAL BIOLOGY. 2020;16(9):e1008122

  Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention.

  Zhang Y; Leitner T; Albert J; Britton T
• Article: SWISS MEDICAL WEEKLY. 2020;150:w20224

  Potential impact of seasonal forcing on a SARS-CoV-2 pandemic.

  Neher RA; Dyrdak R; Druelle V; Hodcroft EB; Albert J
• Article: INTERNATIONAL JOURNAL OF EPIDEMIOLOGY. 2019;48(6):1795-1803

  Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers.

  Giardina F; Romero-Severson EO; Axelsson M; Svedhem V; Leitner T; Britton T; Albert J
• Article: EUROSURVEILLANCE. 2019;24(14):30-37

  Challenges in modelling the proportion of undiagnosed HIV infections in Sweden.

  Andersson E; Nakagawa F; van Sighem A; Axelsson M; Phillips AN; Sönnerborg A; Albert J
• Preprint: BIORXIV. 2018

  Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing

  Dyrdak R; Mastafa M; Hodcroft E; Neher R; Albert J
• Article: AIDS. 2018;32(7):877-884

  Increase in transmitted drug resistance in migrants from sub-Saharan Africa diagnosed with HIV-1 in Sweden.

  Andersson E; Nordquist A; Esbjörnsson J; Flamholc L; Gisslén M; Hejdeman B; Marrone G; Norrgren H; Svedhem V; Wendahl S; Albert J; Sönnerborg A
• Article: PLOS COMPUTATIONAL BIOLOGY. 2017;13(10):e1005775

  Estimating time of HIV-1 infection from next-generation sequence diversity.

  Puller V; Neher R; Albert J
• Journal article: VIRUS EVOLUTION. 2017;3(1):vex003

  In vivo mutation rates and the landscape of fitness costs of HIV-1.

  Zanini F; Puller V; Brodin J; Albert J; Neher RA
• Article: EUROSURVEILLANCE. 2016;21(46):5-10

  Outbreak of enterovirus D68 of the new B3 lineage in Stockholm, Sweden, August to September 2016.

  Dyrdak R; Grabbe M; Hammas B; Ekwall J; Hansson KE; Luthander J; Naucler P; Reinius H; Rotzén-Östlund M; Albert J
• Article: ELIFE. 2016;5:e18889

  Establishment and stability of the latent HIV-1 DNA reservoir.

  Brodin J; Zanini F; Thebo L; Lanz C; Bratt G; Neher RA; Albert J
• Article: VIRUS EVOLUTION. 2016;2(1):vew010

  HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries.

  Esbjörnsson J; Mild M; Audelin A; Fonager J; Skar H; Bruun Jørgensen L; Liitsola K; Björkman P; Bratt G; Gisslén M; Sönnerborg A; Nielsen C; SPREAD/ESAR Programme; Medstrand P; Albert J
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Medlemmar och kontakt

Gruppledare

• 

  Jan Albert

  Professor

  Telefon +46852486770

  E-postadress jan.albert@ki.se

Alla medlemmar i gruppen

• 

  Jan Albert

  Professor

  Telefon +46852486770

  E-postadress jan.albert@ki.se
• 

  Tobias Allander

  Adjungerad Lektor | Docent

  E-postadress tobias.allander@ki.se
• 

  Lili Andersson-Li

  Bioinformatiker

  E-postadress lili.anderssonli@ki.se
• Amanj Bajalan

  Doktorand

  E-postadress amanj.bajalan@ki.se
• Gordana Bogdanovic

  Anknuten till Forskning

  E-postadress gordana.bogdanovic@ki.se
• 

  Sandra Broddesson

  Forskningsingenjör

  E-postadress sandra.broddesson@ki.se
• Mirko Conti

  Anknuten till Forskning

  E-postadress mirko.conti@ki.se
• 

  Robert Dyrdak

  Anknuten till Forskning

  E-postadress robert.dyrdak@ki.se
• 

  Eva Eriksson

  Anknuten till Forskning

  E-postadress eva.eriksson@ki.se
• 

  Malin Grabbe

  Anknuten till Forskning

  E-postadress malin.svensson@ki.se
• 

  Marta Granström

  Anknuten till Forskning

  Telefon +46852482816

  E-postadress marta.granstrom@ki.se
• 

  Lena Grillner

  Anknuten till Forskning

  E-postadress lena.grillner@ki.se
• Mattias Karlsson

  Anknuten till Forskning

  E-postadress mattias.karlsson@ki.se
• Samuel Lampa

  Anknuten till Forskning

  E-postadress samuel.lampa@ki.se
• Amir Nematollahi Mahani

  Anknuten till Forskning

  E-postadress amir.mahani@ki.se
• 

  Sofia Stamouli

  Bioinformatiker

  E-postadress sofia.stamouli@ki.se
• 

  Johan Öckinger

  Anknuten till Forskning

  E-postadress johan.ockinger@ki.se