Mattias Rantalainen
Lektor | Docent
E-postadress: mattias.rantalainen@ki.se
Telefon: +46852482465
Besöksadress: ,
Postadress: C8 Medicinsk epidemiologi och biostatistik, C8 MEB II Rantalainen, 171 77 Stockholm
Om mig
Please go to my English profile page to read more about my research.
Artiklar
- Journal article: MODERN PATHOLOGY. 2025;38(11):100850Steen S; Boissin C; Rantalainen M; Acs B; Hartman J
- Article: BMJ OPEN. 2025;15(7):e097591Mulliqi N; Blilie A; Ji X; Szolnoky K; Olsson H; Titus M; Martinez Gonzalez G; Boman SE; Valkonen M; Gudlaugsson E; Kjosavik SR; Asenjo J; Gambacorta M; Libretti P; Braun M; Kordek R; Lowicki R; Hotakainen K; Vare P; Pedersen BG; Sorensen KD; Ulhoi BP; Rantalainen M; Ruusuvuori P; Delahunt B; Samaratunga H; Tsuzuki T; Janssen EAM; Egevad L; Kartasalo K; Eklund M
- Journal article: CLINICAL CANCER RESEARCH. 2025;31(12):p4-03-28-p4-03-28-P40328Sharma A; Lovgren SK; Eriksson KL; Wang Y; Robertson S; Hartman J; Rantalainen M
- Journal article: SCIENTIFIC REPORTS. 2025;15(1):19804Sharma A; Liu B; Rantalainen M
- Journal article: ELIFE. 2025;13Trac QT; Huang Y; Erkers T; Östling P; Bohlin A; Osterroos A; Vesterlund M; Jafari R; Siavelis I; Backvall H; Kiviluoto S; Orre L; Rantalainen M; Lehtiö J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
- Journal article: ESMO OPEN. 2025;10:104632Tzoras E; Salgkamis D; Tsiknakis N; Johansson H; Sun W; Hellström M; Andersson A; Loibl S; Untch M; Denkert C; Jank P; Rantalainen M; Hartman J; Zerdes I; Matikas A; Bergh J; Foukakis T
- Article: MODERN PATHOLOGY. 2025;38(5):100715Ji X; Salmon R; Mulliqi N; Khan U; Wang Y; Blilie A; Olsson H; Pedersen BG; Sorensen KD; Ulhoi BP; Kjosavik SR; Janssen EAM; Rantalainen M; Egevad L; Ruusuvuori P; Eklund M; Kartasalo K
- Article: BMC CANCER. 2024;24(1):1510Ekholm A; Wang Y; Vallon-Christersson J; Boissin C; Rantalainen M
- Article: MEDICAL IMAGE ANALYSIS. 2024;97:103257Weitz P; Valkonen M; Solorzano L; Carr C; Kartasalo K; Boissin C; Koivukoski S; Kuusela A; Rasic D; Feng Y; Pouplier SS; Sharma A; Eriksson KL; Robertson S; Marzahl C; Gatenbee CD; Anderson ARA; Wodzinski M; Jurgas A; Marini N; Atzori M; Müller H; Budelmann D; Weiss N; Heldmann S; Lotz J; Wolterink JM; De Santi B; Patil A; Sethi A; Kondo S; Kasai S; Hirasawa K; Farrokh M; Kumar N; Greiner R; Latonen L; Laenkholm A-V; Hartman J; Ruusuvuori P; Rantalainen M
- Article: BREAST CANCER RESEARCH. 2024;26(1):123Sharma A; Lovgren SK; Eriksson KL; Wang Y; Robertson S; Hartman J; Rantalainen M
- Article: BREAST CANCER RESEARCH AND TREATMENT. 2024;206(1):163-175Wang Y; Sun W; Karlsson E; Lovgren SK; Acs B; Rantalainen M; Robertson S; Hartman J
- Article: HELIYON. 2024;10(12):e32892Solorzano L; Robertson S; Acs B; Hartman J; Rantalainen M
- Article: BREAST CANCER RESEARCH. 2024;26(1):90Boissin C; Wang Y; Sharma A; Weitz P; Karlsson E; Robertson S; Hartman J; Rantalainen M
- Journal article: CANCER RESEARCH. 2024;84(9):po4-07-05-po4-07-05Robertson S; Wang Y; Sun W; Karlsson E; Lovgren SK; Rantalainen M; Hartman J
- Article: BREAST CANCER RESEARCH. 2024;26(1):17Sharma A; Weitz P; Wang Y; Liu B; Vallon-Christersson J; Hartman J; Rantalainen M
- Article: EUROPEAN JOURNAL OF CANCER. 2023;191:112953Wang Y; Ali MA; Vallon-Christersson J; Humphreys K; Hartman J; Rantalainen M
- Article: SCIENTIFIC DATA. 2023;10(1):562Weitz P; Valkonen M; Solorzano L; Carr C; Kartasalo K; Boissin C; Koivukoski S; Kuusela A; Rasic D; Feng Y; Pouplier SS; Sharma A; Eriksson KL; Latonen L; Laenkholm A-V; Hartman J; Ruusuvuori P; Rantalainen M
- Journal article: CANCER RESEARCH. 2023;83(7):5432Ton K; Wang Y; Pan L; Kartasalo K; Acs B; Weitz P; Zhang L; Liang Y; Hartman J; Volkonen M; Larsson C; Ruusuvuori P; Beechem J; Rantalainen M
- Article: NPJ PRECISION ONCOLOGY. 2023;7(1):32Trac QT; Pawitan Y; Mou T; Erkers T; Ostling P; Bohlin A; Osterroos A; Vesterlund M; Jafari R; Siavelis I; Backvall H; Kiviluoto S; Orre LM; Rantalainen M; Lehtio J; Lehmann S; Kallioniemi O; Vu TN
- Article: ISCIENCE. 2022;25(7):104663Liu B; Wang Y; Weitz P; Lindberg J; Hartman J; Wang W; Egevad L; Gronberg H; Eklund M; Rantalainen M
- Article: BIOINFORMATICS. 2022;38(13):3462-3469Weitz P; Wang Y; Kartasalo K; Egevad L; Lindberg J; Gronberg H; Eklund M; Rantalainen M
- Article: ANNALS OF ONCOLOGY. 2022;33(1):89-98Wang Y; Acs B; Robertson S; Liu B; Solorzano L; Wahlby C; Hartman J; Rantalainen M
- Article: CANCER RESEARCH. 2021;81(19):5115-5126Wang Y; Kartasalo K; Weitz P; Acs B; Valkonen M; Larsson C; Ruusuvuori P; Hartman J; Rantalainen M
- Article: BLOOD ADVANCES. 2021;5(4):1003-1016Mareschal S; Palau A; Lindberg J; Ruminy P; Nilsson C; Bengtzen S; Engvall M; Eriksson A; Neddermeyer A; Marchand V; Jansson M; Bjorklund M; Jardin F; Rantalainen M; Lennartsson A; Cavelier L; Gronberg H; Lehmann S
- Article: NATURE COMMUNICATIONS. 2021;12(1):1054Mer AS; Heath EM; Tonekaboni SAM; Dogan-Artun N; Nair SK; Murison A; Garcia-Prat L; Shlush L; Hurren R; Voisin V; Bader GD; Nislow C; Rantalainen M; Lehmann S; Gower M; Guidos CJ; Lupien M; Dick JE; Minden MD; Schimmer AD; Haibe-Kains B
- Article: BLOOD CANCER JOURNAL. 2020;10(6):67Osterroos A; Bjorklund M; Eriksson A; Lindberg J; Nilsson C; Mareschal S; Rantalainen M; Gronberg H; Lehmann S
- Article: LANCET ONCOLOGY. 2020;21(2):222-232Strom P; Kartasalo K; Olsson H; Solorzano L; Delahunt B; Berney DM; Bostwick DG; Evans AJ; Grignon DJ; Humphrey PA; Iczkowski KA; Kench JG; Kristiansen G; van der Kwast TH; Leite KRM; McKenney JK; Oxley J; Pan C-C; Samaratunga H; Srigley JR; Takahashi H; Tsuzuki T; Varma M; Zhou M; Lindberg J; Lindskog C; Ruusuvuori P; Wahlby C; Gronberg H; Rantalainen M; Egevad L; Eklund M
- Article: CLINICAL CANCER RESEARCH. 2019;25(6):1766-1773De Laere B; Oeyen S; Mayrhofer M; Whitington T; van Dam P-J; Van Oyen P; Ghysel C; Ampe J; Ost P; Demey W; Hoekx L; Schrijvers D; Brouwers B; Lybaert W; Everaert EG; De Maeseneer D; Strijbos M; Bols A; Fransis K; Beije N; de Kruijff IE; van Dam V; Brouwer A; Goossens D; Heyrman L; Van den Eynden GG; Rutten A; Del Favero J; Rantalainen M; Rajan P; Sleijfer S; Ullen A; Yachnin J; Gronberg H; Van Laere SJ; Lindberg J; Dirix LY
- Article: GENOME MEDICINE. 2018;10(1):85Mayrhofer M; De Laere B; Whitington T; Van Oyen P; Ghysel C; Ampe J; Ost P; Demey W; Hoekx L; Schrijvers D; Brouwers B; Lybaert W; Everaert E; De Maeseneer D; Strijbos M; Bols A; Fransis K; Oeyen S; van Dam P-J; Van den Eynden G; Rutten A; Aly M; Nordstrom T; Van Laere S; Rantalainen M; Rajan P; Egevad L; Ullen A; Yachnin J; Dirix L; Gronberg H; Lindberg J
- Article: JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2018;110(10):1094-1101Wang M; Lindberg J; Klevebring D; Nilsson C; Lehmann S; Gronberg H; Rantalainen M
- Article: JOURNAL OF CLINICAL PATHOLOGY. 2018;71(9):787-794Robertson S; Stalhammar G; Darai-Ramqvist E; Rantalainen M; Tobin NP; Bergh J; Hartman J
- Article: BIOINFORMATICS. 2018;34(14):2392-2400Trung NV; Wills QF; Kalari KR; Niu N; Wang L; Pawitan Y; Rantalainen M
- Article: BRIEFINGS IN FUNCTIONAL GENOMICS. 2018;17(4):273-282Rantalainen M
- Article: HISTOPATHOLOGY. 2018;72(6):974-989Stalhammar G; Robertson S; Wedlund L; Lippert M; Rantalainen M; Bergh J; Hartman J
- Article: JOURNAL OF HEMATOLOGY & ONCOLOGY. 2018;11(1):52Mer AS; Lindberg J; Nilsson C; Klevebring D; Wang M; Gronberg H; Lehmann S; Rantalainen M
- Article: BMC CANCER. 2017;17(1):802Karthik G-M; Rantalainen M; Stalhammar G; Lovrot J; Ullah I; Alkodsi A; Ma R; Wedlund L; Lindberg J; Frisell J; Bergh J; Hartman J
- Article: LEUKEMIA. 2017;31(10):2029-2036Wang M; Lindberg J; Klevebring D; Nilsson C; Mer AS; Rantalainen M; Lehmann S; Gronberg H
- Article: JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION. 2017;24(5):950-957Spjuth O; Karlsson A; Clements M; Humphreys K; Ivansson E; Dowling J; Eklund M; Jauhiainen A; Czene K; Gronberg H; Sparen P; Wiklund F; Cheddad A; Palsdottir P; Rantalainen M; Abrahamsson L; Laure E; Litton J-E; Palmgren J
- Article: CANCER RESEARCH. 2017;77(13):3708-3717Holm J; Eriksson L; Ploner A; Eriksson M; Rantalainen M; Li J; Hall P; Czene K
- Article: CLINICAL CANCER RESEARCH. 2017;23(10):2584-2592Li J; Ivansson E; Klevebring D; Tobin NP; Lindstrom LS; Holm J; Prochazka G; Cristando C; Palmgren J; Tornberg S; Humphreys K; Hartman J; Frisell J; Rantalainen M; Lindberg J; Hall P; Bergh J; Gronberg H; Czene K
- Article: SCIENTIFIC REPORTS. 2016;6:38037Rantalainen M; Klevebring D; Lindberg J; Ivansson E; Rosin G; Kis L; Celebioglu F; Fredriksson I; Czene K; Frisell J; Hartman J; Bergh J; Grönberg H
- Article: BIOINFORMATICS. 2016;32(14):2128-2135Trung NV; Wills QF; Kalari KR; Niu N; Wang L; Rantalainen M; Pawitan Y
- Article: CELL REPORTS. 2016;15(9):2000-2011Georgoudaki A-M; Prokopec KE; Boura VF; Hellqvist E; Sohn S; Ostling J; Dahan R; Harris RA; Rantalainen M; Klevebring D; Sund M; Brage SE; Fuxe J; Rolny C; Li F; Ravetch JV; Karlsson MCI
- Article: BREAST CANCER RESEARCH. 2016;18(1):48Wang M; Klevebring D; Lindberg J; Czene K; Grönberg H; Rantalainen M
- Article: MODERN PATHOLOGY. 2016;29(4):318-329Stalhammar G; Martinez NF; Lippert M; Tobin NP; Molholm I; Kis L; Rosin G; Rantalainen M; Pedersen L; Bergh J; Grunkin M; Hartman J
- Article: SCIENTIFIC REPORTS. 2016;6:20200Mer AS; Klevebring D; Grönberg H; Rantalainen M
- Article: PLOS ONE. 2015;10(5):e0127882Rantalainen M; Lindgren CM; Holmes CC
- Article: JOURNAL OF ALZHEIMERS DISEASE. 2015;45(4):1061-1076Sun Y; Bresell A; Rantalainen M; Hoglund K; Lebouvier T; Salter H
- Article: JOURNAL OF PROTEOME RESEARCH. 2015;14(1):479-490Rantalainen M; Bjerrum JT; Olsen J; Nielsen OH; Wang Y
- Article: METHODS IN MOLECULAR BIOLOGY. 2015;1277:147-159Rantalainen M
- Article: METABOLOMICS. 2014;10(2):280-290Bjerrum JT; Rantalainen M; Wang Y; Olsen J; Nielsen OH
- Journal article: GASTROENTEROLOGY. 2013;144(5):s-193Bjerrum JT; Rantalainen M; Wang Y; Olsen J; Nielsen OH
- Article: PLOS ONE. 2013;8(2):e55923Drong AW; Nicholson G; Hedman AK; Meduri E; Grundberg E; Small KS; Shin S-Y; Bell JT; Karpe F; Soranzo N; Spector TD; McCarthy MI; Deloukas P; Rantalainen M; Lindgren CM
- Article: JOURNAL OF PROTEOME RESEARCH. 2012;11(9):4712-4721Zhao X-J; Hao F; Huang C; Rantalainen M; Lei H; Tang H; Wang Y
- Article: PLOS GENETICS. 2012;8(5):e1002704Parts L; Hedman AK; Keildson S; Knights AJ; Abreu-Goodger C; van de Bunt M; Guerra-Assuncao JA; Bartonicek N; van Dongen S; Maegi R; Nisbet J; Barrett A; Rantalainen M; Nica AC; Quail MA; Small KS; Glass D; Enright AJ; Winn J; Deloukas P; Dermitzakis ET; McCarthy MI; Spector TD; Durbin R; Lindgren CM
- Article: JOURNAL OF PROTEOME RESEARCH. 2011;10(12):5562-5567Rantalainen M; Holmes CC
- Article: PROTEOME SCIENCE. 2011;9:73Kato BS; Nicholson G; Neiman M; Rantalainen M; Holmes CC; Barrett A; Uhlen M; Nilsson P; Spector TD; Schwenk JM
- Article: PLOS ONE. 2011;6(11):e27338Rantalainen M; Herrera BM; Nicholson G; Bowden R; Wills QF; Min JL; Neville MJ; Barrett A; Allen M; Rayner NW; Fleckner J; McCarthy MI; Zondervan KT; Karpe F; Holmes CC; Lindgren CM
- Article: ANALYTICA CHIMICA ACTA. 2011;705(1-2):72-80Fonville JM; Bylesjoe M; Coen M; Nicholson JK; Holmes E; Lindon JC; Rantalainen M
- Article: PLOS GENETICS. 2011;7(9):e1002270Nicholson G; Rantalainen M; Li JV; Maher AD; Malmodin D; Ahmadi KR; Faber JH; Barrett A; Min JL; Rayner NW; Toft H; Krestyaninova M; Viksna J; Neogi SG; Dumas M-E; Sarkans U; Donnelly P; Illig T; Adamski J; Suhre K; Allen M; Zondervan KT; Spector TD; Nicholson JK; Lindon JC; Baunsgaard D; Holmes E; McCarthy MI; Holmes CC
- Article: MOLECULAR SYSTEMS BIOLOGY. 2011;7:525Nicholson G; Rantalainen M; Maher AD; Li JV; Malmodin D; Ahmadi KR; Faber JH; Hallgrimsdottir IB; Barrett A; Toft H; Krestyaninova M; Viksna J; Neogi SG; Dumas M-E; Sarkans U; Silverman BW; Donnelly P; Nicholson JK; Allen M; Zondervan KT; Lindon JC; Spector TD; McCarthy MI; Holmes E; Baunsgaard D; Holmes CC
- Article: FEMS MICROBIOLOGY ECOLOGY. 2010;73(3):577-586Wei H; Dong L; Wang T; Zhang M; Hua W; Zhang C; Pang X; Chen M; Su M; Qiu Y; Zhou M; Yang S; Chen Z; Rantalainen M; Nicholson JK; Jia W; Wu D; Zhao L
- Article: JOURNAL OF PROTEOME RESEARCH. 2009;8(5):2361-2375Waldram A; Holmes E; Wang Y; Rantalainen M; Wilson ID; Tuohy KM; McCartney AL; Gibson GR; Nicholson JK
- Article: ANALYTICAL CHEMISTRY. 2009;81(6):2075-2084Alves AC; Rantalainen M; Holmes E; Nicholson JK; Ebbels TMD
- Article: BMC BIOINFORMATICS. 2008;9:105Rantalainen M; Cloarec O; Ebbels TMD; Lundstedt T; Nicholson JK; Holmes E; Trygg J
- Article: BMC BIOINFORMATICS. 2008;9:106Bylesjo M; Rantalainen M; Nicholson JK; Holmes E; Trygg J
- Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008;105(6):2117-2122Li M; Wang B; Zhang M; Rantalainen M; Wang S; Zhou H; Zhang Y; Shen J; Pang X; Zhang M; Wei H; Chen Y; Lu H; Zuo J; Su M; Qiu Y; Jia W; Xiao C; Smith LM; Yang S; Holmes E; Tang H; Zhao G; Nicholson JK; Li L; Zhao L
- Journal article: JOURNAL OF PROTEOME RESEARCH. 2007;6(10):3944-3951Wang Y; Holmes E; Comelli EM; Fotopoulos G; Dorta G; Tang H; Rantalainen MJ; Lindon JC; Corthesy-Theulaz IE; Fay LB; Kochhar S; Nicholson JK
- Article: ANALYTICAL CHEMISTRY. 2007;79(15):5682-5689Smith LM; Maher AD; Cloarec O; Rantalainen M; Tang H; Elliott P; Stamler J; Lindon JC; Holmes E; Nicholson JK
- Article: JOURNAL OF CHEMOMETRICS. 2007;21(7-9):376-385Rantalainen M; Bylesjoe M; Cloarec O; Nicholson JK; Holmes E; Trygg J
- Article: JOURNAL OF PROTEOME RESEARCH. 2006;5(10):2642-2655Rantalainen M; Cloarec O; Beckonert O; Wilson ID; Jackson D; Tonge R; Rowlinson R; Rayner S; Nickson J; Wilkinson RW; Mills JD; Trygg J; Nicholson JK; Holmes E
- Article: JOURNAL OF CHEMOMETRICS. 2006;20(8-10):341-351Bylesjo M; Rantalainen M; Cloarec O; Nicholson JK; Holmes E; Trygg J
- Article: MOLECULAR BIOSYSTEMS. 2006;2(3-4):193-202Williams RE; Lenz EM; Rantalainen M; Willson ID
- Article: MOLECULAR BIOSYSTEMS. 2005;1(2):166-175Williams RE; Lenz EM; Lowden JS; Rantalainen M; Wilson ID
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Alla övriga publikationer
- Preprint: ARXIV. 2025Xiang Y; Liu B; Rantalainen M
- Preprint: MEDRXIV. 2025Du X; Gkekos L; Rai B; Johansson ALV; Fredriksson I; Rantalainen M; Heintz E; Hao S; Clements M
- Preprint: ELIFE. 2025Trac QT; Huang Y; Erkers T; Ostling P; Bohlin A; Osterroos A; Vesterlund M; Jafari R; Siavelis I; Backvall H; Kiviluoto S; Orre L; Rantalainen M; Lehtio J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
- Preprint: MEDRXIV. 2024Sharma A; Gustafsson F; Hartman J; Rantalainen M
- Preprint: ARXIV. 2024Gustafsson FK; Rantalainen M
- Preprint: ARXIV. 2024Gustafsson FK; Rantalainen M
- Preprint: MEDRXIV. 2024Mulliqi N; Blilie A; Ji X; Szolnoky K; Olsson H; Titus M; Gonzalez GM; Boman SE; Valkonen M; Gudlaugsson E; Kjosavik SR; Asenjo J; Gambacorta M; Libretti P; Braun M; Kordek R; Łowicki R; Hotakainen K; Väre P; Pedersen BG; Sørensen KD; Ulhøi BP; Rantalainen M; Ruusuvuori P; Delahunt B; Samaratunga H; Tsuzuki T; Janssen EAM; Egevad L; Kartasalo K; Eklund M
- Preprint: BIORXIV. 2024Trac QT; Huang Y; Erkers T; Östling P; Bohlin A; Österroos A; Vesterlund M; Jafari R; Siavelis I; Bäckvall H; Kiviluoto S; Orre L; Rantalainen M; Lehtiö J; Lehmann S; Kallioniemi O; Pawitan Y; Vu TN
- Preprint: ARXIV. 2024WEEP: A method for spatial interpretation of weakly supervised CNN models in computational pathologySharma A; Liu B; Rantalainen M
- Preprint: RESEARCH SQUARE. 2023Robertson S; Wang Y; Sun W; Karlsson E; Lövgren SK; Acs B; Rantalainen M; Hartman J
- Preprint: MEDRXIV. 2023Sharma A; Lövgren SK; Eriksson KL; Wang Y; Robertson S; Hartman J; Rantalainen M
- Preprint: MEDRXIV. 2023Wang Y; Sun W; Karlsson E; Lövgren SK; Ács B; Rantalainen M; Rantalainen M; Robertson S; Hartman J
- Preprint: MEDRXIV. 2023Boissin C; Wang Y; Sharma A; Weitz P; Karlsson E; Robertson S; Hartman J; Rantalainen M
- Preprint: ARXIV. 2023Ji X; Salmon R; Mulliqi N; Khan U; Wang Y; Blilie A; Olsson H; Pedersen BG; Sørensen KD; Ulhøi BP; Kjosavik SR; Janssen EA; Rantalainen M; Egevad L; Ruusuvuori P; Eklund M; Kartasalo K
- Preprint: ARXIV. 2023Weitz P; Valkonen M; Solorzano L; Carr C; Kartasalo K; Boissin C; Koivukoski S; Kuusela A; Rasic D; Feng Y; Pouplier SS; Sharma A; Eriksson KL; Robertson S; Marzahl C; Gatenbee CD; Anderson ARA; Wodzinski M; Jurgas A; Marini N; Atzori M; Müller H; Budelmann D; Weiss N; Heldmann S; Lotz J; Wolterink JM; De Santi B; Patil A; Sethi A; Kondo S; Kasai S; Hirasawa K; Farrokh M; Kumar N; Greiner R; Latonen L; Laenkholm A-V; Hartman J; Ruusuvuori P; Rantalainen M
- Preprint: BIORXIV. 2023Solorzano L; Robertson S; Hartman J; Rantalainen M
- Preprint: ARXIV. 2023Weitz P; Sartor V; Acs B; Robertson S; Budelmann D; Hartman J; Rantalainen M
- Preprint: MEDRXIV. 2023Sharma A; Weitz P; Wang Y; Liu B; Hartman J; Rantalainen M
- Preprint: ARXIV. 2022Weitz P; Valkonen M; Solorzano L; Carr C; Kartasalo K; Boissin C; Koivukoski S; Kuusela A; Rasic D; Feng Y; Pouplier SKS; Sharma A; Eriksson KL; Latonen L; Laenkholm A-V; Hartman J; Ruusuvuori P; Rantalainen M
- Conference publication: 2021 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW 2021). 2021;:611-619Weitz P; Wang Y; Hartman J; Rantalainen M
- Preprint: RESEARCH SQUARE. 2021Ginestet PG; Weitz P; Rantalainen M; Gabriel EE
- Review: EUROPEAN UROLOGY FOCUS. 2021;7(4):687-691Kartasalo K; Bulten W; Delahunt B; Chen P-HC; Pinckaers H; Olsson H; Ji X; Mulliqi N; Samaratunga H; Tsuzuki T; Lindberg J; Rantalainen M; Wahlby C; Litjens G; Ruusuvuori P; Egevad L; Eklund M
- Preprint: ARXIV. 2021Liu B; Wang Y; Weitz P; Lindberg J; Hartman J; Egevad L; Grönberg H; Eklund M; Rantalainen M
- Preprint: ARXIV. 2021Weitz P; Wang Y; Kartasalo K; Egevad L; Lindberg J; Grönberg H; Eklund M; Rantalainen M
- Preprint: ARXIV. 2020Wang Y; Kartasalo K; Valkonen M; Larsson C; Ruusuvuori P; Hartman J; Rantalainen M
- Review: JOURNAL OF INTERNAL MEDICINE. 2020;288(1):62-81Acs B; Rantalainen M; Hartman J
- Conference publication: CANCER RESEARCH. 2020;80(4):p5-02-06-p5-02-06Rantalainen M; Wang Y; Acz B; Robertson S; Hartman J
- Preprint: ARXIV. 2019Ström P; Kartasalo K; Olsson H; Solorzano L; Delahunt B; Berney DM; Bostwick DG; Evans AJ; Grignon DJ; Humphrey PA; Iczkowski KA; Kench JG; Kristiansen G; van der Kwast TH; Leite KRM; McKenney JK; Oxley J; Pan C-C; Samaratunga H; Srigley JR; Takahashi H; Tsuzuki T; Varma M; Zhou M; Lindberg J; Bergström C; Ruusuvuori P; Wählby C; Grönberg H; Rantalainen M; Egevad L; Eklund M
- Letter: JAMA ONCOLOGY. 2019;5(7):1060-1062De Laere B; Rajan P; Gronberg H; Dirix L; Lindberg J; Mayrhofer M; Whitington T; van Dam P-J; Van Oyen P; Ghysel C; Ampe J; Ost P; Demey W; Hoela L; Schrijvers D; Brouwers B; Lybaert W; Everaert E; De Maeseneer D; Strijbos M; Bols A; Fransis K; Beije N; de Kruijff I; van Dam V; Brouwer A; Goossens D; Heyrman L; Van den Eynden G; Rutten A; Del Favero J; Rantalainen M; Sleijfer S; Ullen A; Yachnin J; Van Laere S; De laere L; Develter T; Vantieghem S; Herman S; Coifs G; Lamotte V; Boumans A; Baitar A; Haeck R; Wallays G
- Preprint: BIORXIV. 2018Mayrhofer M; De Laere B; Whitington T; Van Oyen P; Ghysel C; Ampe J; Ost P; Demey W; Hoekx L; Schrijvers D; Brouwers B; Lybaert W; Everaert E; De Maeseneer D; Strijbos M; Bols A; Fransis K; Oeyen S; van Dam P-J; Van den Eynden G; Rutten A; Aly M; Nordström T; Van Laere S; Rantalainen M; Rajan P; Egevad L; Ullén A; Yachnin J; Dirix L; Grönberg H; Lindberg J
- Conference publication: CANCER RESEARCH. 2017;77:p2-03-03-p2-03-03Czene K; Ivansson E; Klevebring D; Tobin NP; Lindstrom LS; Holm J; Prochazka G; Hilliges C; Palmgren J; Tornberg S; Humphreys K; Hartman J; Frisell J; Rantalainen M; Lindberg J; Hall P; Bergh J; Gronberg H; Li J
- Preprint: BIORXIV. 2016Vu TN; Wills QF; Kalari KR; Niu N; Wang L; Pawitan Y; Rantalainen M
- Book chapter: COMPREHENSIVE CHEMOMETRICS. 2009;p. 101-114Bylesjö M; Cloarec O; Rantalainen M
- Book chapter: COMPREHENSIVE CHEMOMETRICS. 2009;p. 205-211Bylesjö M; Rantalainen M
- Book chapter: COMPREHENSIVE CHEMOMETRICS. 2009;p. 109-127Bylesjö M; Cloarec O; Rantalainen M
- Book chapter: COMPREHENSIVE CHEMOMETRICS. 2009;p. 129-138Bylesjö M; Rantalainen M
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Forskningsbidrag
- Swedish Research Council1 December 2024 - 30 November 2028Breast cancer (BC) remains a global health challenge, with 7.8 million new cases annually. Despite treatment and screening advances that have gradually improved outcomes since the 1970s, many patients still do not survive their dissease, creating an urgent need for precision diagnostics to identify high-risk individuals and predict therapeutic responses. The Consortium for AI in Registry-Based Image Epidemiology Research in Breast Cancer (CARE-B) addresses this by combining registry data, histopathology images, and AI to improve BC characterization.CARE-B will establish an internationally unique large (up to 30,000 patients), multimodal multi-site database integrating clinical data, whole slide images (WSIs), and molecular profiles from breast cancer cohorts in Sweden, Denmark, and Scotland. The consortium will develop scalable AI models for cost-effective precision diagnostics, focusing on deep phenotyping of BC subtypes based on routine H&E stained histopathology slides, characterise intra-tumor heterogeneity (ITH), predicting treatment responses and for prognostic stratification.CARE-B will foster collaboration, support junior researchers, and advance epidemiological research and clinical translation. By leveraging AI and registry data, CARE-B aims to significantly impact BC research and clinical diagnostics, creating a foundation for future advances in precision medicine, while also building a research environment that take health-registry research to the next level.
- Swedish Cancer Society1 January 2024Cancer is a leading cause of death globally. Precision medicine, which offers new (targeted) therapies, has the potential to improve cancer care. However, precision diagnostic solutions are required to be able to provide the right treatment to the right patient, and to be able to do it quickly, reliably and cost-effectively. Molecular diagnostics offer improved diagnostics, but at a high cost, which limits patient access and also places a high financial burden on healthcare systems. AI technology has the potential to offer new precision diagnostics that can reach broad patient groups. In this project, we develop and validate AI-based image analysis solutions for cancer diagnostics in breast and prostate cancer. Clinical pathology is undergoing a digital transition that enables the introduction of AI-based decision support tools for precision diagnostics at a fraction of the cost of molecular diagnostics. The project uses large and unique study materials consisting of histopathology images and clinical pathology data for the development and clinical validation of new AI-based precision diagnostic solutions. The project has the potential to contribute to improving diagnostics and cancer care and increased access to precision diagnostics. The goals of the projects are partly to build large studies that are the basis for studies in AI-based precision diagnostics, partly to develop solutions that improve prognostic and treatment predictive models for breast and prostate cancer.
- Swedish Research Council1 January 2023 - 31 December 2025Cancer is a leading cause of death globally. Precision medicine, offering novel (targeted) therapies, has the potential to substantially improve cancer patient outcomes. However, to be effective, precision diagnostic solutions for patient stratification (prognostic and predictive) are required. To improve outcomes for broad groups of patients, fast, reliable and cost-effective precision diagnostic solutions are needed. Current routine diagnosis of cancer is based on manual histopathological assessment, which is imprecise. Molecular diagnostics offers improved patient stratification, but at a high price, limiting patient access and imposing a high economic burden on healthcare systems. CHIME develops, validates and contributes to translation of AI-based image analysis solutions (computational pathology) for cancer diagnosis and patient stratification that meet current and future needs in clinical cancer precision medicine, trials and cancer research. Clinical pathology is undergoing a digital transition that enables translation of AI-based decision support tools for precision diagnostics at a fraction of the cost of molecular diagnostics. CHIME will leverage large and unique study materials (>400,000 histopathology images and clinical data with outcomes) for the development and validation of clinically relevant models for patient stratification in multiple cancer diseases. CHIME will contribute toward increased access to precision diagnostic and equality in cancer care.
- VINNOVA1 October 2021 - 31 December 2024
- Swedish Cancer Society1 January 2021Microscopic examination of stained tissue samples is the primary approach to cancer detection and diagnosis. However, there is a lack of pathology expertise at the same time as the manual review carried out in today's cancer care has a built-in degree of uncertainty and error because the assessments are difficult for the human eye. The uncertainty in the assessments leads to both over- and under-treatment, with potentially large consequences for individual patients. Access to expertise in pathology also varies across locations and over time, which can contribute to a degree of inequality in care. Rapid progress has been made in recent years in an area of artificial intelligence (AI) and machine learning referred to as “deep learning”. Deep learning models can now be trained to perform difficult prediction problems with reliability comparable to, or better than, humans in a variety of applications, including medical image analysis. These models may transform cancer care for the better in several areas. This project uses large-scale epidemiological studies for the development and validation of AI-based cancer diagnostics for breast cancer, prostate cancer and colorectal cancer. The goal is that the research should be able to lead to AI-based decision support that can be used to improve the precision of today's routine diagnostics based on tissue samples, but also to the development of new diagnostic and prognostic models. The results will lead to safer diagnoses and increased access to high-quality cancer diagnostics. This will lead to reduced over- and under-treatment, and better patient outcomes.
Anställningar
- Lektor, Medicinsk epidemiologi och biostatistik, Karolinska Institutet, 2020-
Examina och utbildning
- Docent, Epidemiologi, Karolinska Institutet, 2020