Top Publications 2019

Integrative discovery of treatments for high-risk neuroblastoma.
Almstedt E, Elgendy R, Hekmati N, Rosén E, Wärn C, Olsen TK, et al
Nat Commun 2020 Jan;11(1):71

A mass spectrometry-based approach to distinguish annular and specific lipid binding to membrane proteins.
Bolla JR, Corey RA, Sahin C, Gault J, Hummer A, Hopper JTS, et al
Angew. Chem. Int. Ed. Engl. 2019 Dec;():

Safety of proton pump inhibitors questioned based on a large randomized trial of patients receiving rivaroxaban or aspirin.
Simin J, Liu Q, Fornes R, Brusselaers N
Gastroenterology 2019 Dec;():

An MPER antibody neutralizes HIV-1 using germline features shared among donors.
Zhang L, Irimia A, He L, Landais E, Rantalainen K, Leaman DP, et al
Nat Commun 2019 Nov;10(1):5389

Pair Correlation Analysis Maps the Dynamic Two-Dimensional Organization of Natural Killer Cell Receptors at the Synapse.
Hedde PN, Staaf E, Singh SB, Johansson S, Gratton E
ACS Nano 2019 Dec;():

Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast.
Wei W, Hennig BP, Wang J, Zhang Y, Piazza I, Pareja Sanchez Y, et al
Genome Res. 2019 Dec;29(12):1974-1984

Vaccination with Glycan-Modified HIV NFL Envelope Trimer-Liposomes Elicits Broadly Neutralizing Antibodies to Multiple Sites of Vulnerability.
Dubrovskaya V, Tran K, Ozorowski G, Guenaga J, Wilson R, Bale S, et al
Immunity 2019 Nov;51(5):915-929.e7

Extensive dissemination and intraclonal maturation of HIV Env vaccine-induced B cell responses.
Phad GE, Pushparaj P, Tran K, Dubrovskaya V, Àdori M, Martinez-Murillo P, et al
J. Exp. Med. 2019 Nov;():

Evolutionary analyses of base-pairing interactions in DNA and RNA secondary structures.
Golden M, Murrell B, Martin D, Pybus OG, Hein J
Mol. Biol. Evol. 2019 Oct;():

Microbe-host interplay in atopic dermatitis and psoriasis.
Fyhrquist N, Muirhead G, Prast-Nielsen S, Jeanmougin M, Olah P, Skoog T, et al
Nat Commun 2019 Oct;10(1):4703

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations.
Tett A, Huang KD, Asnicar F, Fehlner-Peach H, Pasolli E, Karcher N, et al
Cell Host Microbe 2019 11;26(5):666-679.e7

No distinct microbiome signature of irritable bowel syndrome found in a Swedish random population.
Hugerth LW, Andreasson A, Talley NJ, Forsberg AM, Kjellström L, Schmidt PT, et al
Gut 2019 Oct;():

HyPhy 2.5 - a customizable platform for evolutionary hypothesis testing using phylogenies.
Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, et al
Mol. Biol. Evol. 2019 Aug;():

Long-read amplicon denoising.
Kumar V, Vollbrecht T, Chernyshev M, Mohan S, Hanst B, Bavafa N, et al
Nucleic Acids Res. 2019 10;47(18):e104

Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.
Tengvall K, Huang J, Hellström C, Kammer P, Biström M, Ayoglu B, et al
Proc. Natl. Acad. Sci. U.S.A. 2019 Aug;116(34):16955-16960

EglN3 hydroxylase stabilizes BIM-EL linking VHL type 2C mutations to pheochromocytoma pathogenesis and chemotherapy resistance.
Li S, Rodriguez J, Li W, Bullova P, Fell SM, Surova O, et al
Proc. Natl. Acad. Sci. U.S.A. 2019 Aug;116(34):16997-17006

Ultrabright and Stable Luminescent Labels for Correlative Cathodoluminescence Electron Microscopy Bioimaging.
Keevend K, Puust L, Kurvits K, Gerken LRH, Starsich FHL, Li JH, et al
Nano Lett. 2019 Aug;():

Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization.
Kong R, Duan H, Sheng Z, Xu K, Acharya P, Chen X, et al
Cell 2019 Jul;178(3):567-584.e19

How to lose tumor suppression
David Philip Lane
Science 365 (6453), 539-540 2019 Aug;()
 

EglN3 hydroxylase stabilizes BIM-EL linking VHL type 2C mutations to pheochromocytoma pathogenesis and chemotherapy resistance.
Li S, Rodriguez J, Li W, Bullova P, Fell SM, Surova O, et al
Proc. Natl. Acad. Sci. U.S.A. 2019 Aug;():
 

Apelin inhibition prevents resistance and metastasis associated with anti-angiogenic therapy.
Uribesalgo I, Hoffmann D, Zhang Y, Kavirayani A, Lazovic J, Berta J, et al
EMBO Mol Med 2019 Aug;11(8):e9266
 

The gut microbiota influences skeletal muscle mass and function in mice.
Lahiri S, Kim H, Garcia-Perez I, Reza MM, Martin KA, Kundu P, et al
Sci Transl Med 2019 Jul;11(502):

Adipocyte and lipid metabolism in cancer drug resistance.
Cao Y
J. Clin. Invest. 2019 07;129(8):3006-3017
 

Single-Cell RNA Sequencing of the T Helper Cell Response to House Dust Mites Defines a Distinct Gene Expression Signature in Airway Th2 Cells.
Tibbitt CA, Stark JM, Martens L, Ma J, Mold JE, Deswarte K, et al
Immunity 2019 07;51(1):169-184.e5

Separate domains of G3BP promote efficient clustering of alphavirus replication complexes and recruitment of the translation initiation machinery.
Götte B, Panas MD, Hellström K, Liu L, Samreen B, Larsson O, et al
PLoS Pathog. 2019 Jun;15(6):e1007842
 

Spatial and temporal localization of immune transcripts defines hallmarks and diversity in the tuberculosis granuloma. Berit Carow, Thomas Hauling, Xiaoyan Qian, Igor Kramnik, Mats Nilsson & Martin E. Rottenberg. Nature Communications volume 10, Article number: 1823 (2019)
 

Accumulation of Circulating CCR7+ Natural Killer Cells Marks Melanoma Evolution and Reveals a CCL19-Dependent Metastatic Pathway.
Cristiani CM, Turdo A, Ventura V, Apuzzo T, Capone M, Madonna G, et al
Cancer Immunol Res 2019 May;7(5):841-852
 

Luminescent CeO2:Eu3+ nanocrystals for robust in situ H2O2 real-time detection in bacterial cell cultures.
Henning DF, Merkl P, Yun C, Iovino F, Xie L, Mouzourakis E, et al
Biosens Bioelectron 2019 May;132():286-293
 

FGFR4 phosphorylates MST1 to confer breast cancer cells resistance to MST1/2-dependent apoptosis.
Turunen SP, von Nandelstadh P, Öhman T, Gucciardo E, Seashore-Ludlow B, Martins B, et al
Cell Death Differ. 2019 Mar;():
 

System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, et al
Mol. Cell 2019 Apr;74(1):196-211.e11
 

Multi-faceted inhibition of dendritic cell function by CD4+Foxp3+ regulatory T cells.
Seitz C, Liu S, Klocke K, Joly AL, Czarnewski PV, Tibbitt CA, et al
J. Autoimmun. 2019 Mar;98():86-94
 

Integrated Molecular Analysis of Undifferentiated Uterine Sarcomas Reveals Clinically Relevant Molecular Subtypes.
Binzer-Panchal A, Hardell E, Viklund B, Ghaderi M, Bosse T, Nucci MR, et al
Clin. Cancer Res. 2019 Apr;25(7):2155-2165

Pneumolysin binds to the mannose receptor C type 1 (MRC-1) leading to anti-inflammatory responses and enhanced pneumococcal survival.
Subramanian K, Neill DR, Malak HA, Spelmink L, Khandaker S, Dalla Libera Marchiori G, et al
Nat Microbiol 2019 01;4(1):62-70
 

CXADR-Mediated Formation of an AKT Inhibitory Signalosome at Tight Junctions Controls Epithelial-Mesenchymal Plasticity in Breast Cancer.
Nilchian A, Johansson J, Ghalali A, Asanin ST, Santiago A, Rosencrantz O, et al
Cancer Res. 2019 01;79(1):47-60