Publications- Magda Bienko Group

Selected publications

2022

Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.
Mota A, Schweitzer M, Wernersson E, Crosetto N, Bienko M
Sci Data 2022 02;9(1):47

2021

Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1.
Wiegard A, Kuzin V, Cameron DP, Grosser J, Ceribelli M, Mehmood R, Ballarino R, Valant F, Grochowski R, Karabogdan I, Crosetto N, Lindqvist A, Bizard AH, Kouzine F, Natsume T, Baranello L
Mol Cell 2021 12;81(24):5007-5024.e9

A recurrent chromosomal inversion suffices for driving escape from oncogene-induced senescence via subTAD reorganization.
Zampetidis CP, Galanos P, Angelopoulou A, Zhu Y, Polyzou A, Karamitros T, Kotsinas A, Lagopati N, Mourkioti I, Mirzazadeh R, Polyzos A, Garnerone S, Mizi A, Gusmao EG, Sofiadis K, Gál Z, Larsen DH, Pefani DE, Demaria M, Tsirigos A, Crosetto N, Maya-Mendoza A, Papaspyropoulos A, Evangelou K, Bartek J, Papantonis A, Gorgoulis VG
Mol Cell 2021 12;81(23):4907-4923.e8

Interplay between copy number alterations and immune profiles in the early breast cancer Scandinavian Breast Group 2004-1 randomized phase II trial: results from a feasibility study.
Zerdes I, Simonetti M, Matikas A, Harbers L, Acs B, Boyaci C, Zhang N, Salgkamis D, Agartz S, Moreno-Ruiz P, Bai Y, Rimm DL, Hartman J, Mezheyeuski A, Bergh J, Crosetto N, Foukakis T
NPJ Breast Cancer 2021 Nov;7(1):144

Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas.
Harbers L, Agostini F, Nicos M, Poddighe D, Bienko M, Crosetto N
Front Oncol 2021 ;11():700568

COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance.
Simonetti M, Zhang N, Harbers L, Milia MG, Brossa S, Huong Nguyen TT, Cerutti F, Berrino E, Sapino A, Bienko M, Sottile A, Ghisetti V, Crosetto N
Nat Commun 2021 06;12(1):3903

2020

Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.
Tarbier M, Mackowiak SD, Frade J, Catuara-Solarz S, Biryukova I, Gelali E, Menéndez DB, Zapata L, Ossowski S, Bienko M, Gallant CJ, Friedländer MR
Nat Commun 2020 10;11(1):5445

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.
Bouwman BAM, Agostini F, Garnerone S, Petrosino G, Gothe HJ, Sayols S, Moor AE, Itzkovitz S, Bienko M, Roukos V, Crosetto N
Nat Protoc 2020 12;15(12):3894-3941

Genome-Wide CRISPR Off-Target DNA Break Detection by the BLISS Method.
Ballarino R, Bouwman BAM, Crosetto N
Methods Mol Biol 2021 ;2162():261-281

Colibactin DNA-damage signature indicates mutational impact in colorectal cancer.
Dziubańska-Kusibab PJ, Berger H, Battistini F, Bouwman BAM, Iftekhar A, Katainen R, Cajuso T, Crosetto N, Orozco M, Aaltonen LA, Meyer TF
Nat Med 2020 07;26(7):1063-1069

GPSeq reveals the radial organization of chromatin in the cell nucleus.
Girelli G, Custodio J, Kallas T, Agostini F, Wernersson E, Spanjaard B, Mota A, Kolbeinsdottir S, Gelali E, Crosetto N, Bienko M
Nat Biotechnol 2020 10;38(10):1184-1193

Radial Organization in the Mammalian Nucleus.
Crosetto N, Bienko M
Front Genet 2020 ;11():33