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Can HIV reverse transcriptase activity assay be a low-cost alternative for viral load monitoring in resource-limited settings?
Gupta S, Palchaudhuri R, Neogi U, Srinivasa H, Ashorn P, De Costa A, et al
BMJ open 2016;6(1):e008795-

Factors influencing the efficacy of rilpivirine in HIV-1 subtype C in low- and middle-income countries
Neogi U, Häggblom A, Singh K, Rogers Lc, Rao Sd, Amogne W, et al
The Journal of antimicrobial chemotherapy 2016;71(2):367-71

Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study
Tenores Study Grp, Gregson J, Tang M, Ndembi N, Hamers Rl, Rhee Sy, et al
LANCET INFECTIOUS DISEASES 2016;16(5):565-75

Mutational Heterogeneity in p6 Gag Late Assembly (L) Domains in HIV-1 Subtype C Viruses from South Africa
Neogi U, Engelbrecht S, Claassen M, Jacobs Gb, Van Zyl G, Preiser W, et al
AIDS research and human retroviruses 2016;32(1):80-4

Phylogenetic Analysis of Ethiopian HIV-1 Subtype C Near Full-Length Genomes Reveals High Intrasubtype Diversity and a Strong Geographical Cluster
Amogne W, Bontell I, Grossmann S, Aderaye G, Lindquist L, Sönnerborg A, et al
AIDS research and human retroviruses 2016;32(5):471-4

Virological failure in patients with HIV-1 subtype C receiving antiretroviral therapy: an analysis of a prospective national cohort in Sweden
Häggblom A, Svedhem V, Singh K, Sönnerborg A, Neogi U
The lancet. HIV 2016;3(4):e166-74

Gut microbiota diversity predicts immune status in HIV-1 infection
Nowak P, Troseid M, Avershina E, Barqasho B, Neogi U, Holm K, et al
AIDS (London, England) 2015;29(18):2409-18

Performance of Genotypic Tools for Prediction of Tropism in HIV-1 Subtype C V3 Loop Sequences
Gupta S, Neogi U, Srinivasa H, Shet A
INTERVIROLOGY 2015;58(1):1-5

Subtype-independent near full-length HIV-1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management
Grossmann S, Nowak P, Neogi U
Journal of the International AIDS Society 2015;18():20035-

Virological efficacy with first-line antiretroviral treatment in India: predictors of viral failure and evidence of viral resuppression
Shet A, Neogi U, Kumarasamy N, Decosta A, Shastri S, Rewari Bb
TROPICAL MEDICINE & INTERNATIONAL HEALTH 2015;20(11):1462-1472

Cost-efficient HIV-1 drug resistance surveillance using multiplexed high-throughput amplicon sequencing: implications for use in low- and middle-income countries
Ekici H, Rao Sd, Sönnerborg A, Ramprasad Vl, Gupta R, Neogi U
The Journal of antimicrobial chemotherapy 2014;69(12):3349-55

Drug resistance in non-B subtype HIV-1: impact of HIV-1 reverse transcriptase inhibitors
Singh K, Flores Ja, Kirby Ka, Neogi U, Sonnerborg A, Hachiya A, et al
Viruses 2014;6(9):3535-62

Effect of mobile telephone reminders on treatment outcome in HIV: evidence from a randomised controlled trial in India
Shet A, De Costa A, Kumarasamy N, Rodrigues R, Rewari Bb, Ashorn P, et al
BMJ (Clinical research ed.) 2014;349():g5978-

Genetic Factors Associated with Slow Progression of HIV among Perinatally-Infected Indian Children
Chaudhuri Rp, Neogi U, Rao Sd, Shet A
INDIAN PEDIATRICS 2014;51(10):801-3

HIV-1 coreceptor tropism in India: increasing proportion of X4-tropism in subtype C strains over two decades
Gupta S, Neogi U, Srinivasa H, Banerjea Ac, Shet A
Journal of acquired immune deficiency syndromes (1999) 2014;65(4):397-404

Limited evolution but increasing trends of primary non-nucleoside reverse transcriptase inhibitor resistance mutations in therapy-naive HIV-1-infected individuals in India
Neogi U, Gupta S, Palchaudhuri R, Rao Sd, Shastri S, Diwan V, et al
Antiviral therapy 2014;19(8):813-8

Minor viral population with drug-resistant mutation and risk of persistent low-level viremia or 'blips' in HIV-1 subtype C
Neogi U, Sonnerborg A
AIDS (London, England) 2014;28(17):2635-6

Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients
Neogi U, Rao Sd, Bontell I, Verheyen J, Rao Vr, Gore Sc, et al
AIDS (London, England) 2014;28(15):2319-22

Phylogenetic Characterization of Six Full-Length HIV-1 Subtype C Molecular Clones from Three Patients: Identification of Rare Subtype C Strains Containing Two NF-kappa B Motifs in the Long Terminal Repeat
Hanna Le, Neogi U, Ranga U, Swaminathan S, Prasad Vr
AIDS RESEARCH AND HUMAN RETROVIRUSES 2014;30(6):586-91

Temporal trends in the Swedish HIV-1 epidemic: increase in non-B subtypes and recombinant forms over three decades
Neogi U, Häggblom A, Santacatterina M, Bratt G, Gisslén M, Albert J, et al
PloS one 2014;9(6):e99390-

The gp120 protein is a second determinant of decreased neurovirulence of Indian HIV-1C isolates compared to southern African HIV-1C isolates
Rao Vr, Neogi U, Eugenin E, Prasad Vr
PloS one 2014;9(9):e107074-

Clade C HIV-1 isolates circulating in Southern Africa exhibit a greater frequency of dicysteine motif-containing Tat variants than those in Southeast Asia and cause increased neurovirulence
Rao Vr, Neogi U, Talboom Js, Padilla L, Rahman M, Fritz-french C, et al
Retrovirology 2013;10():61-

Effectiveness of First-line Antiretroviral Therapy and Acquired Drug Resistance Among HIV-1-infected Children in India
Shet A, Neogi U, Sahoo Pn, De Costa A
PEDIATRIC INFECTIOUS DISEASE JOURNAL 2013;32(5):e227-9

Genetic Architecture of HIV Type 1 Nef and Tat from HLA-B57-Typed Long-Term Survivors in an Indian Cohort of Perinatally HIV-Infected Children
Neogi U, Palchaudhuri R, Bommana S, Shet A
AIDS RESEARCH AND HUMAN RETROVIRUSES 2013;29(12):1613-6

High concordance of genotypic coreceptor prediction in plasma-viral RNA and proviral DNA of HIV-1 subtype C: implications for use of whole blood DNA in resource-limited settings
Gupta S, Neogi U, Srinivasa H, Shet A
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY 2013;68(9):2003-6

High Viremia in HIV-1 Subtype C Infection and Spread of the Epidemic
Neogi U, Palchaudhuri R, Shet A
JOURNAL OF INFECTIOUS DISEASES 2013;208(5):866-7

Human APOBEC3G-mediated hypermutation is associated with antiretroviral therapy failure in HIV-1 subtype C-infected individuals
Neogi U, Shet A, Sahoo Pn, Bontell I, Ekstrand Ml, Banerjea Ac, et al
Journal of the International AIDS Society 2013;16():18472-

Long-term efficacy of first line antiretroviral therapy in Indian HIV-1 infected patients: a longitudinal cohort study
Neogi U, Heylen E, Shet A, Chandy S, Shamsunder R, Sönnerborg A, et al
PloS one 2013;8(1):e55421-

Dried blood spot HIV-1 RNA quantification: A useful tool for viral load monitoring among HIV-infected individuals in India
Neogi U, Gupta S, Rodridges R, Sahoo Pn, Rao Sd, Rewari Bb, et al
INDIAN JOURNAL OF MEDICAL RESEARCH 2012;:956-62

Emergence of unique recombinant forms (URFs) in Indian HIV-1 epidemic: data from nationwide clinical cohort between 2007 and 2011
Neogi U, Gupta S, Shet A, De Costa A, Laishram Rl, Wanchu A, et al
RETROVIROLOGY 2012;:-

Genetic Characterization of HIV Type 1 Tat Exon 1 from a Southern Indian Clinical Cohort: Identification of Unique Epidemiological Signature Residues
Neogi U, Gupta S, Sahoo Pn, Shet A, Rao Sd, Ranga U, et al
AIDS RESEARCH AND HUMAN RETROVIRUSES 2012;28(9):1152-6

Higher Prevalence of Predicted X4-Tropic Strains in Perinatally Infected Older Children With HIV-1 Subtype C in India
Neogi U, Sahoo Pn, Arumugam K, Sonnerborg A, De Costa A, Shet A
JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES 2012;59(4):347-53

High viremia and low level of transmitted drug resistance in anti-retroviral therapy-naïve perinatally-infected children and adolescents with HIV-1 subtype C infection
Neogi U, Sahoo Pn, De Costa A, Shet A
BMC infectious diseases 2012;12():317-

Molecular epidemiology of HIV-1 subtypes in India: origin and evolutionary history of the predominant subtype C
Neogi U, Bontell I, Shet A, De Costa A, Gupta S, Diwan V, et al
PloS one 2012;7(6):e39819-

Characterization of HIV Type 1 Subtype C protease Gene: Selection of L63P Mutation in Protease Inhibitor-Naive Indian Patients
Neogi U, Sahoo Pn, Kumar R, De Costa A, Shet A
AIDS RESEARCH AND HUMAN RETROVIRUSES 2011;27(11):1249-53

Genetic architecture of HIV-1 genes circulating in north India & their functional implications
Neogi U, Sood V, Ronsard L, Singh J, Lata S, Ramachandran Vg, et al
INDIAN JOURNAL OF MEDICAL RESEARCH 2011;134(6):769-78

Selection of nonnucleoside reverse transcriptase inhibitor-associated mutations in HIV-1 subtype C: evidence of etravirine cross-resistance
Neogi U, Shet A, Shamsundar R, Ekstrand Ml
AIDS 2011;25(8):1123-6

Co-receptor tropism prediction among 1045 Indian HIV-1 subtype C sequences: Therapeutic implications for India
Neogi U, Prarthana Sb, D'souza G, Decosta A, Kuttiatt Vs, Ranga U, et al
AIDS RESEARCH AND THERAPY 2010;:24-

Diversity of HIV Type 1 Long Terminal Repeat (LTR) Sequences Following Mother-to-Child Transmission in North India
Neogi U, Sharma Y, Sood V, Wanchu A, Banerjea Ac
AIDS RESEARCH AND HUMAN RETROVIRUSES 2010;26(12):1299-305

Genetic and functional analysis of HIV-1 Rev Responsive Element (RRE) sequences from North-India
Sharma Y, Neogi U, Sood V, Banerjee S, Samrat S, Wanchu A, et al
AIDS research and therapy 2010;7():28-

Naturally Occurring Polymorphisms and Primary Drug Resistance Profile Among Antiretroviral-Naive Individuals in Bangalore, India
Neogi U, Prarthana Bs, Gupta S, D'souza G, De Costa A, Kuttiatt Vs, et al
AIDS RESEARCH AND HUMAN RETROVIRUSES 2010;26(10):1097-101

Emergence of HIV-1 circulatory recombinant forms (CRFs) and unique recombinant forms (URFs) in North India: functional and pathogenic implications
Neogi U, Sood V, Bano As, Wanchu A, Banerjea Ac
RETROVIROLOGY 2009;:-

Genetic analysis of HIV-1 Circulating Recombinant Form 02_AG, B and C subtype-specific envelope sequences from Northern India and their predicted co-receptor usage
Neogi U, Sood V, Chowdhury A, Das S, Ramachandran Vg, Sreedhar Vk, et al
AIDS research and therapy 2009;6():28-

Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr
Bano As, Sood V, Neogi U, Goel N, Kuttiat Vs, Wanchu A, et al
JOURNAL OF GENERAL VIROLOGY 2009;:2768-76

Global HIV-1 molecular epidemiology with special reference to genetic analysis of HIV-1 subtypes circulating in North India: functional and pathogenic implications of genetic variation
Neogi U, Sood V, Banerjee S, Ghosh N, Verma S, Samrat S, et al
Indian journal of experimental biology 2009;47(6):424-31

The expanding HIV-1 epidemic aggravates therapeutics and vaccine development programs in India
Neogi U
Bioinformation 2009;4(3):90-1

Host genes that affect progression of AIDS/HIV in India and novel gene therapeutic approaches against HIV
Sood V, Rathore A, Husain S, Khan S, Patra S, Shankar V, et al
INDIAN JOURNAL OF BIOCHEMISTRY & BIOPHYSICS 2008;45(3):141-148

Novel HIV-1 long terminal repeat (LTR) sequences of subtype B and mosaic intersubtype B/C recombinants in North India
Neogi U, Sood V, Goel N, Wanchu A, Banerjea Ac
ARCHIVES OF VIROLOGY 2008;153(10):1961-6

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